TRNAU1AP      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-31BG293LV06-32
idx00
TRCN#_or_BGC#TRCN0000160495TRCN0000160495
shRNA_or_gRNA_sequenceCCGGCAACCAGTATTATCAGCAGTACTCGAGTACTGCTGATAATACTGGTTGTTTTTTGCCGGCAACCAGTATTATCAGCAGTACTCGAGTACTGCTGATAATACTGGTTGTTTTTTG
PAM
NameTRNAU1APTRNAU1AP
Sample_IDBG293LV06-31BG293LV06-32
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameTRNAU1APTRNAU1AP
qPCR_result57.658.5
Ave_qPCR58.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1011810119




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-31BG293LV06-31BG293LV06-32BG293LV06-32
Sample_IDBG293LV06-31BG293LV06-31BG293LV06-32BG293LV06-32
Sample Name
Sample NameTRNAU1AP-BG293LV06-31TRNAU1AP-BG293LV06-31BTRNAU1AP-BG293LV06-32TRNAU1AP-BG293LV06-32B
RBPTRNAU1APTRNAU1APTRNAU1APTRNAU1AP
Cell_Line293T293T293T293T
Exp UID
StatusSequencedSequencedSequencedSequenced
Status_date2024-10-162024-10-162024-10-162024-10-16
ProjectENCORE2ENCORE2ENCORE2ENCORE2
Note
ID13468135701346913571




Library-Prep Information
BG293LV06-31BG293LV06-31BG293LV06-32BG293LV06-32
Sample #3513336134
Sample NameTRNAU1AP-BG293LV06-31TRNAU1AP-BG293LV06-31BTRNAU1AP-BG293LV06-32TRNAU1AP-BG293LV06-32B
Sample_Name_Alias
Index Well PositionC05G01D05H01
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-10-022024-09-252024-10-02
Lib_IDLib-240925BLib-241002Lib-240925BLib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp268282284283
Peak_Molarity4.5270.00107.0081.90
libSampleQC_DNA_WellDNA_Library_set71/set1/C5.pngDNA_Library_set72/set1/G1.pngDNA_Library_set71/set1/D5.pngDNA_Library_set72/set1/H1.png
RIN10.09.910.09.9
libSample_RNA_WellRNA_Library_set71/set1/C5.pngRNA_Library_set72/set1/G1.pngRNA_Library_set71/set1/D5.pngRNA_Library_set72/set1/H1.png
SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-10-042024-09-302024-10-04
Sample_IDBG293LV06-31BG293LV06-31BG293LV06-32BG293LV06-32
RBPTRNAU1APTRNAU1APTRNAU1APTRNAU1AP
Batch_IDBG293LV06BG293LV06BG293LV06BG293LV06
WB_result0.0000.0000.0000.000
Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequence
ProjectENCORE2ENCORE2ENCORE2ENCORE2
ID4460455844614559




Sequencing Information
BG293LV06-31BG293LV06-31BG293LV06-32BG293LV06-32
Sample_IDBG293LV06-31BG293LV06-31BG293LV06-32BG293LV06-32
Sample NameTRNAU1AP-BG293LV06-31TRNAU1AP-BG293LV06-31BTRNAU1AP-BG293LV06-32TRNAU1AP-BG293LV06-32B
Pool IDPool-240930Pool-241004Pool-240930Pool-241004
LocalServer_folderset71set72set71set72
total_reads11,960,26335,008,61229,297,60924,549,625
total_aligned_reads8,810,29132,072,79526,500,29121,720,575
unique_aligned_reads8,207,23129,971,63424,854,40220,311,281
percent_uniqueAligned0.686210.856120.848340.82736
correlation_replicates0.9771860.9982030.9771860.998203
spikein_reads26,274132,65070,044103,720
percent_spikeins0.002200.003790.002390.00422
original_ReadLength101101101101
QC_StatusLowNumReadsReadyToSubmitOtherReasonsNotToSubmitReadyToSubmit
ID3029312730303128




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database