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HNRNPCL1
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-123
BG293LV06-124
idx
0
0
TRCN#_or_BGC#
TRCN0000075086
TRCN0000075086
shRNA_or_gRNA_sequence
CCGGGCTTCAATTCTAAGAGTGGAACTCGAGTTCCACTCTTAGAATTGAAGCTTTTTG
CCGGGCTTCAATTCTAAGAGTGGAACTCGAGTTCCACTCTTAGAATTGAAGCTTTTTG
PAM
Name
HNRNPCL1
HNRNPCL1
Sample_ID
BG293LV06-123
BG293LV06-124
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
HNRNPCL1
HNRNPCL1
qPCR_result
63.4
62.4
Ave_qPCR
62.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10210
10211
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-123
BG293LV06-124
Sample_ID
BG293LV06-123
BG293LV06-124
Sample Name
Sample Name
HNRNPCL1-BG293LV06-123B
HNRNPCL1-BG293LV06-124B
RBP
HNRNPCL1
HNRNPCL1
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13560
13561
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-123
BG293LV06-124
Sample #
123
124
Sample Name
HNRNPCL1-BG293LV06-123B
HNRNPCL1-BG293LV06-124B
Sample_Name_Alias
Index Well Position
C09
D09
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
273
280
Peak_Molarity
90.90
91.40
libSampleQC_DNA_Well
DNA_Library_set72/set1/C9.png
DNA_Library_set72/set1/D9.png
RIN
10.0
9.9
libSample_RNA_Well
RNA_Library_set72/set1/C9.png
RNA_Library_set72/set1/D9.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-123
BG293LV06-124
RBP
HNRNPCL1
HNRNPCL1
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4548
4549
Sequencing Information
BG293LV06-123
BG293LV06-124
Sample_ID
BG293LV06-123
BG293LV06-124
Sample Name
HNRNPCL1-BG293LV06-123B
HNRNPCL1-BG293LV06-124B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
43,356,394
36,328,670
total_aligned_reads
40,934,706
34,449,192
unique_aligned_reads
38,497,413
32,562,042
percent_uniqueAligned
0.88793
0.89632
correlation_replicates
0.975429
0.975429
spikein_reads
116,358
90,676
percent_spikeins
0.00268
0.00250
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3117
3118
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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