HNRNPCL1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-123BG293LV06-124
idx00
TRCN#_or_BGC#TRCN0000075086TRCN0000075086
shRNA_or_gRNA_sequenceCCGGGCTTCAATTCTAAGAGTGGAACTCGAGTTCCACTCTTAGAATTGAAGCTTTTTGCCGGGCTTCAATTCTAAGAGTGGAACTCGAGTTCCACTCTTAGAATTGAAGCTTTTTG
PAM
NameHNRNPCL1HNRNPCL1
Sample_IDBG293LV06-123BG293LV06-124
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameHNRNPCL1HNRNPCL1
qPCR_result63.462.4
Ave_qPCR62.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1021010211




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-123BG293LV06-124
Sample_IDBG293LV06-123BG293LV06-124
Sample Name
Sample NameHNRNPCL1-BG293LV06-123BHNRNPCL1-BG293LV06-124B
RBPHNRNPCL1HNRNPCL1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1356013561




Library-Prep Information
BG293LV06-123BG293LV06-124
Sample #123124
Sample NameHNRNPCL1-BG293LV06-123BHNRNPCL1-BG293LV06-124B
Sample_Name_Alias
Index Well PositionC09D09
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp273280
Peak_Molarity90.9091.40
libSampleQC_DNA_WellDNA_Library_set72/set1/C9.pngDNA_Library_set72/set1/D9.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set72/set1/C9.pngRNA_Library_set72/set1/D9.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-123BG293LV06-124
RBPHNRNPCL1HNRNPCL1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45484549




Sequencing Information
BG293LV06-123BG293LV06-124
Sample_IDBG293LV06-123BG293LV06-124
Sample NameHNRNPCL1-BG293LV06-123BHNRNPCL1-BG293LV06-124B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads43,356,39436,328,670
total_aligned_reads40,934,70634,449,192
unique_aligned_reads38,497,41332,562,042
percent_uniqueAligned0.887930.89632
correlation_replicates0.9754290.975429
spikein_reads116,35890,676
percent_spikeins0.002680.00250
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31173118




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database