RBM11      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Released)
BG293LV06-45BG293LV06-46
idx00
TRCN#_or_BGC#TRCN0000162312TRCN0000162312
shRNA_or_gRNA_sequenceCCGGCCCAGCTCATATAAATGGACTCTCGAGAGTCCATTTATATGAGCTGGGTTTTTTGCCGGCCCAGCTCATATAAATGGACTCTCGAGAGTCCATTTATATGAGCTGGGTTTTTTG
PAM
NameRBM11RBM11
Sample_IDBG293LV06-45BG293LV06-46
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRBM11RBM11
qPCR_result58.348.7
Ave_qPCR53.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1218012181




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-45BG293LV06-46
Sample_IDBG293LV06-45BG293LV06-46
Sample Name
Sample NameRBM11-BG293LV06-45RBM11-BG293LV06-46
RBPRBM11RBM11
Cell_Line293T293T
Exp UID
StatusReleasedReleased
Status_date2025-04-212025-04-21
ProjectENCORE2ENCORE2
Note
ID1348213483




Library-Prep Information
BG293LV06-45BG293LV06-46
Sample #4748
Sample NameRBM11-BG293LV06-45RBM11-BG293LV06-46
Sample_Name_Alias
Index Well PositionG06H06
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp276278
Peak_Molarity88.3066.10
libSampleQC_DNA_WellDNA_Library_set71/set1/G6.pngDNA_Library_set71/set1/H6.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/G6.pngRNA_Library_set71/set1/H6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-45BG293LV06-46
RBPRBM11RBM11
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44724473




Sequencing Information
BG293LV06-45BG293LV06-46
Sample_IDBG293LV06-45BG293LV06-46
Sample NameRBM11-BG293LV06-45RBM11-BG293LV06-46
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads41,444,20136,434,660
total_aligned_reads38,279,22233,456,321
unique_aligned_reads35,793,61631,293,967
percent_uniqueAligned0.863660.85891
correlation_replicates0.9959600.995960
spikein_reads84,210109,972
percent_spikeins0.002030.00302
original_ReadLength101101
QC_StatusSubmittedSubmitted
ID30413042




Data Submission Information
DCC submission information was not avaliable




File Information
file_namefile_pathfile_formatoutput_typeassay_typelabSample IDplatformread_lengthrun_typepaired_endassemblygenome_annotationderived_fromcontrolled_byProjectNoteFILE_ID
RBM11-BG293LV06-45_S47_L002_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3041NovaSeq6000100paired-ended1NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gzENCORE229359
RBM11-BG293LV06-45_S47_L002_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3041NovaSeq6000100paired-ended2NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229423
RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bamENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3041GRCh38V40RBM11-BG293LV06-45_S47_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-45_S47_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229488
RBM11-BG293LV06-45_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3041GRCh38V40RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bamENCORE229552
RBM11-BG293LV06-45_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3041GRCh38V40RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bamENCORE229616
RBM11-BG293LV06-45_Signal.Unique.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3041GRCh38V40RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bamENCORE229680
RBM11-BG293LV06-45_quant.sfENCODE_DATA/set71/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3041GRCh38V40RBM11-BG293LV06-45_S47_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-45_S47_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229744
RBM11-BG293LV06-46_S48_L002_R1_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3042NovaSeq6000100paired-ended1NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gzENCORE229360
RBM11-BG293LV06-46_S48_L002_R2_001.filtered.trimmed.paired.fastq.gzENCODE_DATA/set71/fastq_trimmedfastqreadsknockdown followed by RNA-seqGraveley Lab3042NovaSeq6000100paired-ended2NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229424
RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bamENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbamalignmentsknockdown followed by RNA-seqGraveley Lab3042GRCh38V40RBM11-BG293LV06-46_S48_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-46_S48_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229489
RBM11-BG293LV06-46_Signal.UniqueMultiple.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-allminus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3042GRCh38V40RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bamENCORE229553
RBM11-BG293LV06-46_Signal.UniqueMultiple.strand+.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig+allplus strand signal of all readsknockdown followed by RNA-seqGraveley Lab3042GRCh38V40RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bamENCORE229617
RBM11-BG293LV06-46_Signal.Unique.strand-.bwENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_linksbigWig-uniqueminus strand signal of unique readsknockdown followed by RNA-seqGraveley Lab3042GRCh38V40RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bamENCORE229681
RBM11-BG293LV06-46_quant.sfENCODE_DATA/set71/salmon_ENCORE2_file_linkstranscript_quantificationtranscript quantificationsknockdown followed by RNA-seqGraveley Lab3042GRCh38V40RBM11-BG293LV06-46_S48_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-46_S48_L002_R2_001.filtered.trimmed.paired.fastq.gzENCORE229745