RBM11-BG293LV06-45_S47_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3041 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29359 |
RBM11-BG293LV06-45_S47_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3041 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29423 |
RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3041 | | | | | GRCh38 | V40 | RBM11-BG293LV06-45_S47_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-45_S47_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29488 |
RBM11-BG293LV06-45_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3041 | | | | | GRCh38 | V40 | RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29552 |
RBM11-BG293LV06-45_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3041 | | | | | GRCh38 | V40 | RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29616 |
RBM11-BG293LV06-45_Signal.Unique.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3041 | | | | | GRCh38 | V40 | RBM11-BG293LV06-45_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29680 |
RBM11-BG293LV06-45_quant.sf | ENCODE_DATA/set71/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3041 | | | | | GRCh38 | V40 | RBM11-BG293LV06-45_S47_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-45_S47_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29744 |
RBM11-BG293LV06-46_S48_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3042 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29360 |
RBM11-BG293LV06-46_S48_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3042 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29424 |
RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3042 | | | | | GRCh38 | V40 | RBM11-BG293LV06-46_S48_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-46_S48_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29489 |
RBM11-BG293LV06-46_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3042 | | | | | GRCh38 | V40 | RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29553 |
RBM11-BG293LV06-46_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3042 | | | | | GRCh38 | V40 | RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29617 |
RBM11-BG293LV06-46_Signal.Unique.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3042 | | | | | GRCh38 | V40 | RBM11-BG293LV06-46_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29681 |
RBM11-BG293LV06-46_quant.sf | ENCODE_DATA/set71/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3042 | | | | | GRCh38 | V40 | RBM11-BG293LV06-46_S48_L002_R1_001.filtered.trimmed.paired.fastq.gz,RBM11-BG293LV06-46_S48_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29745 |