NUDT21      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-3BG293LV06-4
idx00
TRCN#_or_BGC#TRCN0000272630TRCN0000272630
shRNA_or_gRNA_sequenceCCGGTGTACCCTCTTACCAATTATACTCGAGTATAATTGGTAAGAGGGTACATTTTTGCCGGTGTACCCTCTTACCAATTATACTCGAGTATAATTGGTAAGAGGGTACATTTTTG
PAM
NameNUDT21/CPSF5NUDT21/CPSF5
Sample_IDBG293LV06-3BG293LV06-4
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameNUDT21NUDT21
qPCR_result93.792.7
Ave_qPCR93.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1009010091




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-3BG293LV06-4
Sample_IDBG293LV06-3BG293LV06-4
Sample Name
Sample NameNUDT21-BG293LV06-3NUDT21-BG293LV06-4
RBPNUDT21NUDT21
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1344013441




Library-Prep Information
BG293LV06-3BG293LV06-4
Sample #78
Sample NameNUDT21-BG293LV06-3NUDT21-BG293LV06-4
Sample_Name_Alias
Index Well PositionG01H01
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp268283
Peak_Molarity65.5048.80
libSampleQC_DNA_WellDNA_Library_set71/set1/G1.pngDNA_Library_set71/set1/H1.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/G1.pngRNA_Library_set71/set1/H1.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-3BG293LV06-4
RBPNUDT21NUDT21
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44324433




Sequencing Information
BG293LV06-3BG293LV06-4
Sample_IDBG293LV06-3BG293LV06-4
Sample NameNUDT21-BG293LV06-3NUDT21-BG293LV06-4
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads31,723,21326,145,049
total_aligned_reads26,683,48322,264,575
unique_aligned_reads24,817,65120,814,591
percent_uniqueAligned0.782320.79612
correlation_replicates0.9495940.949594
spikein_reads94,69296,732
percent_spikeins0.002980.00370
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30013002




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database