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NUDT21
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-3
BG293LV06-4
idx
0
0
TRCN#_or_BGC#
TRCN0000272630
TRCN0000272630
shRNA_or_gRNA_sequence
CCGGTGTACCCTCTTACCAATTATACTCGAGTATAATTGGTAAGAGGGTACATTTTTG
CCGGTGTACCCTCTTACCAATTATACTCGAGTATAATTGGTAAGAGGGTACATTTTTG
PAM
Name
NUDT21/CPSF5
NUDT21/CPSF5
Sample_ID
BG293LV06-3
BG293LV06-4
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
NUDT21
NUDT21
qPCR_result
93.7
92.7
Ave_qPCR
93.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10090
10091
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-3
BG293LV06-4
Sample_ID
BG293LV06-3
BG293LV06-4
Sample Name
Sample Name
NUDT21-BG293LV06-3
NUDT21-BG293LV06-4
RBP
NUDT21
NUDT21
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13440
13441
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-3
BG293LV06-4
Sample #
7
8
Sample Name
NUDT21-BG293LV06-3
NUDT21-BG293LV06-4
Sample_Name_Alias
Index Well Position
G01
H01
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
268
283
Peak_Molarity
65.50
48.80
libSampleQC_DNA_Well
DNA_Library_set71/set1/G1.png
DNA_Library_set71/set1/H1.png
RIN
10.0
10.0
libSample_RNA_Well
RNA_Library_set71/set1/G1.png
RNA_Library_set71/set1/H1.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-3
BG293LV06-4
RBP
NUDT21
NUDT21
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4432
4433
Sequencing Information
BG293LV06-3
BG293LV06-4
Sample_ID
BG293LV06-3
BG293LV06-4
Sample Name
NUDT21-BG293LV06-3
NUDT21-BG293LV06-4
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
31,723,213
26,145,049
total_aligned_reads
26,683,483
22,264,575
unique_aligned_reads
24,817,651
20,814,591
percent_uniqueAligned
0.78232
0.79612
correlation_replicates
0.949594
0.949594
spikein_reads
94,692
96,732
percent_spikeins
0.00298
0.00370
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3001
3002
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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