HNRNPF      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-55BG293LV06-56
idx00
TRCN#_or_BGC#TRCN0000001235TRCN0000001235
shRNA_or_gRNA_sequenceCCGGGAGGTACATTGGCATCGTGAACTCGAGTTCACGATGCCAATGTACCTCTTTTTCCGGGAGGTACATTGGCATCGTGAACTCGAGTTCACGATGCCAATGTACCTCTTTTT
PAM
NameHNRNPFHNRNPF
Sample_IDBG293LV06-55BG293LV06-56
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameHNRNPFHNRNPF
qPCR_result68.969.7
Ave_qPCR69.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1014210143




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-55BG293LV06-56
Sample_IDBG293LV06-55BG293LV06-56
Sample Name
Sample NameHNRNPF-BG293LV06-55HNRNPF-BG293LV06-56
RBPHNRNPFHNRNPF
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1349213493




Library-Prep Information
BG293LV06-55BG293LV06-56
Sample #5758
Sample NameHNRNPF-BG293LV06-55HNRNPF-BG293LV06-56
Sample_Name_Alias
Index Well PositionA08B08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp276280
Peak_Molarity92.90100.00
libSampleQC_DNA_WellDNA_Library_set71/set1/A8.pngDNA_Library_set71/set1/B8.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set71/set1/A8.pngRNA_Library_set71/set1/B8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-55BG293LV06-56
RBPHNRNPFHNRNPF
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44824483




Sequencing Information
BG293LV06-55BG293LV06-56
Sample_IDBG293LV06-55BG293LV06-56
Sample NameHNRNPF-BG293LV06-55HNRNPF-BG293LV06-56
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads34,738,36834,713,251
total_aligned_reads31,638,47431,812,601
unique_aligned_reads29,880,12230,018,025
percent_uniqueAligned0.860150.86474
correlation_replicates0.9941430.994143
spikein_reads142,592117,916
percent_spikeins0.004100.00340
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30513052




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database