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HNRNPF
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-55
BG293LV06-56
idx
0
0
TRCN#_or_BGC#
TRCN0000001235
TRCN0000001235
shRNA_or_gRNA_sequence
CCGGGAGGTACATTGGCATCGTGAACTCGAGTTCACGATGCCAATGTACCTCTTTTT
CCGGGAGGTACATTGGCATCGTGAACTCGAGTTCACGATGCCAATGTACCTCTTTTT
PAM
Name
HNRNPF
HNRNPF
Sample_ID
BG293LV06-55
BG293LV06-56
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
HNRNPF
HNRNPF
qPCR_result
68.9
69.7
Ave_qPCR
69.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10142
10143
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-55
BG293LV06-56
Sample_ID
BG293LV06-55
BG293LV06-56
Sample Name
Sample Name
HNRNPF-BG293LV06-55
HNRNPF-BG293LV06-56
RBP
HNRNPF
HNRNPF
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13492
13493
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-55
BG293LV06-56
Sample #
57
58
Sample Name
HNRNPF-BG293LV06-55
HNRNPF-BG293LV06-56
Sample_Name_Alias
Index Well Position
A08
B08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
276
280
Peak_Molarity
92.90
100.00
libSampleQC_DNA_Well
DNA_Library_set71/set1/A8.png
DNA_Library_set71/set1/B8.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set71/set1/A8.png
RNA_Library_set71/set1/B8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-55
BG293LV06-56
RBP
HNRNPF
HNRNPF
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4482
4483
Sequencing Information
BG293LV06-55
BG293LV06-56
Sample_ID
BG293LV06-55
BG293LV06-56
Sample Name
HNRNPF-BG293LV06-55
HNRNPF-BG293LV06-56
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
34,738,368
34,713,251
total_aligned_reads
31,638,474
31,812,601
unique_aligned_reads
29,880,122
30,018,025
percent_uniqueAligned
0.86015
0.86474
correlation_replicates
0.994143
0.994143
spikein_reads
142,592
117,916
percent_spikeins
0.00410
0.00340
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3051
3052
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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