WDR6      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-89BG293LV06-90
idx00
TRCN#_or_BGC#TRCN0000353745TRCN0000353745
shRNA_or_gRNA_sequenceCCGGCAATCGGCATCGGATGGTTAACTCGAGTTAACCATCCGATGCCGATTGTTTTTGCCGGCAATCGGCATCGGATGGTTAACTCGAGTTAACCATCCGATGCCGATTGTTTTTG
PAM
NameWDR6WDR6
Sample_IDBG293LV06-89BG293LV06-90
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameWDR6WDR6
qPCR_result69.272.6
Ave_qPCR70.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1017610177




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-89BG293LV06-90
Sample_IDBG293LV06-89BG293LV06-90
Sample Name
Sample NameWDR6-BG293LV06-89BWDR6-BG293LV06-90B
RBPWDR6WDR6
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1352613527




Library-Prep Information
BG293LV06-89BG293LV06-90
Sample #8990
Sample NameWDR6-BG293LV06-89BWDR6-BG293LV06-90B
Sample_Name_Alias
Index Well PositionA05B05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp273277
Peak_Molarity105.0091.60
libSampleQC_DNA_WellDNA_Library_set72/set1/A5.pngDNA_Library_set72/set1/B5.png
RIN10.09.8
libSample_RNA_WellRNA_Library_set72/set1/A5.pngRNA_Library_set72/set1/B5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-89BG293LV06-90
RBPWDR6WDR6
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45144515




Sequencing Information
BG293LV06-89BG293LV06-90
Sample_IDBG293LV06-89BG293LV06-90
Sample NameWDR6-BG293LV06-89BWDR6-BG293LV06-90B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads25,969,17336,489,963
total_aligned_reads23,421,27832,709,436
unique_aligned_reads21,892,31630,638,153
percent_uniqueAligned0.843010.83963
correlation_replicates0.9812940.981294
spikein_reads111,982186,382
percent_spikeins0.004310.00511
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30833084




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database