YTHDF1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-63BG293LV06-64
idx00
TRCN#_or_BGC#TRCN0000062770TRCN0000062770
shRNA_or_gRNA_sequenceCCGGCCCGAAAGAGTTTGAGTGGAACTCGAGTTCCACTCAAACTCTTTCGGGTTTTTGCCGGCCCGAAAGAGTTTGAGTGGAACTCGAGTTCCACTCAAACTCTTTCGGGTTTTTG
PAM
NameYTHDF1YTHDF1
Sample_IDBG293LV06-63BG293LV06-64
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameYTHDF1YTHDF1
qPCR_result65.669.0
Ave_qPCR67.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1015010151




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-63BG293LV06-64
Sample_IDBG293LV06-63BG293LV06-64
Sample Name
Sample NameYTHDF1-BG293LV06-63BYTHDF1-BG293LV06-64B
RBPYTHDF1YTHDF1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1350013501




Library-Prep Information
BG293LV06-63BG293LV06-64
Sample #6566
Sample NameYTHDF1-BG293LV06-63BYTHDF1-BG293LV06-64B
Sample_Name_Alias
Index Well PositionA02B02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp283280
Peak_Molarity75.9082.00
libSampleQC_DNA_WellDNA_Library_set72/set1/A2.pngDNA_Library_set72/set1/B2.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set72/set1/A2.pngRNA_Library_set72/set1/B2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-63BG293LV06-64
RBPYTHDF1YTHDF1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44904491




Sequencing Information
BG293LV06-63BG293LV06-64
Sample_IDBG293LV06-63BG293LV06-64
Sample NameYTHDF1-BG293LV06-63BYTHDF1-BG293LV06-64B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads21,649,67426,446,422
total_aligned_reads17,833,21423,528,449
unique_aligned_reads16,617,25921,929,566
percent_uniqueAligned0.767550.82921
correlation_replicates0.9896600.989660
spikein_reads87,512117,422
percent_spikeins0.004040.00444
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30593060




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database