DDX5      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-121BG293LV06-122
idx00
TRCN#_or_BGC#TRCN0000272488TRCN0000272488
shRNA_or_gRNA_sequenceCCGGGCTCCTATTCTGATTGCTACACTCGAGTGTAGCAATCAGAATAGGAGCTTTTTGCCGGGCTCCTATTCTGATTGCTACACTCGAGTGTAGCAATCAGAATAGGAGCTTTTTG
PAM
NameDDX5DDX5
Sample_IDBG293LV06-121BG293LV06-122
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameDDX5DDX5
qPCR_result80.387.6
Ave_qPCR84.0
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1020810209




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-121BG293LV06-122
Sample_IDBG293LV06-121BG293LV06-122
Sample Name
Sample NameDDX5-BG293LV06-121BDDX5-BG293LV06-122B
RBPDDX5DDX5
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1355813559




Library-Prep Information
BG293LV06-121BG293LV06-122
Sample #121122
Sample NameDDX5-BG293LV06-121BDDX5-BG293LV06-122B
Sample_Name_Alias
Index Well PositionA09B09
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp278284
Peak_Molarity106.0093.20
libSampleQC_DNA_WellDNA_Library_set72/set1/A9.pngDNA_Library_set72/set1/B9.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set72/set1/A9.pngRNA_Library_set72/set1/B9.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-121BG293LV06-122
RBPDDX5DDX5
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45464547




Sequencing Information
BG293LV06-121BG293LV06-122
Sample_IDBG293LV06-121BG293LV06-122
Sample NameDDX5-BG293LV06-121BDDX5-BG293LV06-122B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads28,498,45837,631,675
total_aligned_reads26,786,89135,804,502
unique_aligned_reads24,901,25333,592,600
percent_uniqueAligned0.873780.89267
correlation_replicates0.9789450.978945
spikein_reads135,548216,178
percent_spikeins0.004760.00574
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31153116




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database