GTSF1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-23BG293LV06-24
idx00
TRCN#_or_BGC#TRCN0000130086TRCN0000130086
shRNA_or_gRNA_sequenceCCGGCATAAGAATAACCTGGCTTCACTCGAGTGAAGCCAGGTTATTCTTATGTTTTTTGCCGGCATAAGAATAACCTGGCTTCACTCGAGTGAAGCCAGGTTATTCTTATGTTTTTTG
PAM
NameGTSF1GTSF1
Sample_IDBG293LV06-23BG293LV06-24
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameGTSF1GTSF1
qPCR_result27.132.0
Ave_qPCR29.6
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1011010111




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-23BG293LV06-24
Sample_IDBG293LV06-23BG293LV06-24
Sample Name
Sample NameGTSF1-BG293LV06-23GTSF1-BG293LV06-24
RBPGTSF1GTSF1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1346013461




Library-Prep Information
BG293LV06-23BG293LV06-24
Sample #2728
Sample NameGTSF1-BG293LV06-23GTSF1-BG293LV06-24
Sample_Name_Alias
Index Well PositionC04D04
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp289285
Peak_Molarity99.90101.00
libSampleQC_DNA_WellDNA_Library_set71/set1/C4.pngDNA_Library_set71/set1/D4.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set71/set1/C4.pngRNA_Library_set71/set1/D4.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-23BG293LV06-24
RBPGTSF1GTSF1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44524453




Sequencing Information
BG293LV06-23BG293LV06-24
Sample_IDBG293LV06-23BG293LV06-24
Sample NameGTSF1-BG293LV06-23GTSF1-BG293LV06-24
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads40,498,91433,725,433
total_aligned_reads37,059,54730,586,973
unique_aligned_reads34,714,17528,636,478
percent_uniqueAligned0.857160.84911
correlation_replicates0.9968320.996832
spikein_reads96,51676,204
percent_spikeins0.002380.00226
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30213022




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database