RNPS1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-9BG293LV06-10
idx00
TRCN#_or_BGC#TRCN0000000050TRCN0000000050
shRNA_or_gRNA_sequenceCCGGTGATTGACATGCCCGTGGAAACTCGAGTTTCCACGGGCATGTCAATCATTTTTCCGGTGATTGACATGCCCGTGGAAACTCGAGTTTCCACGGGCATGTCAATCATTTTT
PAM
NameRNPS1RNPS1
Sample_IDBG293LV06-9BG293LV06-10
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRNPS1RNPS1
qPCR_result55.953.1
Ave_qPCR54.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1009610097




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-9BG293LV06-10
Sample_IDBG293LV06-9BG293LV06-10
Sample Name
Sample NameRNPS1-BG293LV06-9RNPS1-BG293LV06-10
RBPRNPS1RNPS1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1344613447




Library-Prep Information
BG293LV06-9BG293LV06-10
Sample #1314
Sample NameRNPS1-BG293LV06-9RNPS1-BG293LV06-10
Sample_Name_Alias
Index Well PositionE02F02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp295294
Peak_Molarity87.8084.20
libSampleQC_DNA_WellDNA_Library_set71/set1/E2.pngDNA_Library_set71/set1/F2.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set71/set1/E2.pngRNA_Library_set71/set1/F2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-9BG293LV06-10
RBPRNPS1RNPS1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44384439




Sequencing Information
BG293LV06-9BG293LV06-10
Sample_IDBG293LV06-9BG293LV06-10
Sample NameRNPS1-BG293LV06-9RNPS1-BG293LV06-10
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads40,907,51435,986,302
total_aligned_reads36,213,87833,104,738
unique_aligned_reads33,898,39830,987,462
percent_uniqueAligned0.828660.86109
correlation_replicates0.9926180.992618
spikein_reads114,62699,056
percent_spikeins0.002800.00275
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30073008




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database