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RNPS1
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-9
BG293LV06-10
idx
0
0
TRCN#_or_BGC#
TRCN0000000050
TRCN0000000050
shRNA_or_gRNA_sequence
CCGGTGATTGACATGCCCGTGGAAACTCGAGTTTCCACGGGCATGTCAATCATTTTT
CCGGTGATTGACATGCCCGTGGAAACTCGAGTTTCCACGGGCATGTCAATCATTTTT
PAM
Name
RNPS1
RNPS1
Sample_ID
BG293LV06-9
BG293LV06-10
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
RNPS1
RNPS1
qPCR_result
55.9
53.1
Ave_qPCR
54.5
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10096
10097
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-9
BG293LV06-10
Sample_ID
BG293LV06-9
BG293LV06-10
Sample Name
Sample Name
RNPS1-BG293LV06-9
RNPS1-BG293LV06-10
RBP
RNPS1
RNPS1
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13446
13447
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-9
BG293LV06-10
Sample #
13
14
Sample Name
RNPS1-BG293LV06-9
RNPS1-BG293LV06-10
Sample_Name_Alias
Index Well Position
E02
F02
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
295
294
Peak_Molarity
87.80
84.20
libSampleQC_DNA_Well
DNA_Library_set71/set1/E2.png
DNA_Library_set71/set1/F2.png
RIN
10.0
9.9
libSample_RNA_Well
RNA_Library_set71/set1/E2.png
RNA_Library_set71/set1/F2.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-9
BG293LV06-10
RBP
RNPS1
RNPS1
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4438
4439
Sequencing Information
BG293LV06-9
BG293LV06-10
Sample_ID
BG293LV06-9
BG293LV06-10
Sample Name
RNPS1-BG293LV06-9
RNPS1-BG293LV06-10
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
40,907,514
35,986,302
total_aligned_reads
36,213,878
33,104,738
unique_aligned_reads
33,898,398
30,987,462
percent_uniqueAligned
0.82866
0.86109
correlation_replicates
0.992618
0.992618
spikein_reads
114,626
99,056
percent_spikeins
0.00280
0.00275
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3007
3008
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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