RBM22      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-11BG293LV06-12
idx00
TRCN#_or_BGC#TRCN0000008650TRCN0000008650
shRNA_or_gRNA_sequenceACTGAATGTGAAATCTCGAGATTTCACATTCAGTCTGCGGNACTGAATGTGAAATCTCGAGATTTCACATTCAGTCTGCGGN
PAM
NameRBM22RBM22
Sample_IDBG293LV06-11BG293LV06-12
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRBM22RBM22
qPCR_result91.088.8
Ave_qPCR89.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1009810099




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-11BG293LV06-12
Sample_IDBG293LV06-11BG293LV06-12
Sample Name
Sample NameRBM22-BG293LV06-11RBM22-BG293LV06-12
RBPRBM22RBM22
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1344813449




Library-Prep Information
BG293LV06-11BG293LV06-12
Sample #1516
Sample NameRBM22-BG293LV06-11RBM22-BG293LV06-12
Sample_Name_Alias
Index Well PositionG02H02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp284286
Peak_Molarity82.7059.90
libSampleQC_DNA_WellDNA_Library_set71/set1/G2.pngDNA_Library_set71/set1/H2.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set71/set1/G2.pngRNA_Library_set71/set1/H2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-11BG293LV06-12
RBPRBM22RBM22
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44404441




Sequencing Information
BG293LV06-11BG293LV06-12
Sample_IDBG293LV06-11BG293LV06-12
Sample NameRBM22-BG293LV06-11RBM22-BG293LV06-12
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads30,350,15649,793,185
total_aligned_reads27,632,91744,515,048
unique_aligned_reads25,651,92941,612,504
percent_uniqueAligned0.845200.83571
correlation_replicates0.9684960.968496
spikein_reads76,540162,344
percent_spikeins0.002520.00326
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30093010




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database