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PPIA
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-43
BG293LV06-44
idx
0
0
TRCN#_or_BGC#
TRCN0000049230
TRCN0000049230
shRNA_or_gRNA_sequence
CCGGTGGTGACTTCACACGCCATAACTCGAGTTATGGCGTGTGAAGTCACCATTTTTG
CCGGTGGTGACTTCACACGCCATAACTCGAGTTATGGCGTGTGAAGTCACCATTTTTG
PAM
Name
PPIA
PPIA
Sample_ID
BG293LV06-43
BG293LV06-44
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
PPIA
PPIA
qPCR_result
96.6
97.6
Ave_qPCR
97.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10130
10131
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-43
BG293LV06-44
Sample_ID
BG293LV06-43
BG293LV06-44
Sample Name
Sample Name
PPIA-BG293LV06-43
PPIA-BG293LV06-44
RBP
PPIA
PPIA
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13480
13481
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-43
BG293LV06-44
Sample #
45
46
Sample Name
PPIA-BG293LV06-43
PPIA-BG293LV06-44
Sample_Name_Alias
Index Well Position
E06
F06
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
280
281
Peak_Molarity
94.40
95.20
libSampleQC_DNA_Well
DNA_Library_set71/set1/E6.png
DNA_Library_set71/set1/F6.png
RIN
9.9
9.8
libSample_RNA_Well
RNA_Library_set71/set1/E6.png
RNA_Library_set71/set1/F6.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-43
BG293LV06-44
RBP
PPIA
PPIA
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4470
4471
Sequencing Information
BG293LV06-43
BG293LV06-44
Sample_ID
BG293LV06-43
BG293LV06-44
Sample Name
PPIA-BG293LV06-43
PPIA-BG293LV06-44
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
43,277,099
35,497,833
total_aligned_reads
39,812,172
32,585,119
unique_aligned_reads
37,392,410
30,638,640
percent_uniqueAligned
0.86402
0.86311
correlation_replicates
0.999529
0.999529
spikein_reads
65,090
60,438
percent_spikeins
0.00150
0.00170
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3039
3040
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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