PPIA      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-43BG293LV06-44
idx00
TRCN#_or_BGC#TRCN0000049230TRCN0000049230
shRNA_or_gRNA_sequenceCCGGTGGTGACTTCACACGCCATAACTCGAGTTATGGCGTGTGAAGTCACCATTTTTGCCGGTGGTGACTTCACACGCCATAACTCGAGTTATGGCGTGTGAAGTCACCATTTTTG
PAM
NamePPIAPPIA
Sample_IDBG293LV06-43BG293LV06-44
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePPIAPPIA
qPCR_result96.697.6
Ave_qPCR97.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1013010131




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-43BG293LV06-44
Sample_IDBG293LV06-43BG293LV06-44
Sample Name
Sample NamePPIA-BG293LV06-43PPIA-BG293LV06-44
RBPPPIAPPIA
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1348013481




Library-Prep Information
BG293LV06-43BG293LV06-44
Sample #4546
Sample NamePPIA-BG293LV06-43PPIA-BG293LV06-44
Sample_Name_Alias
Index Well PositionE06F06
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp280281
Peak_Molarity94.4095.20
libSampleQC_DNA_WellDNA_Library_set71/set1/E6.pngDNA_Library_set71/set1/F6.png
RIN9.99.8
libSample_RNA_WellRNA_Library_set71/set1/E6.pngRNA_Library_set71/set1/F6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-43BG293LV06-44
RBPPPIAPPIA
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44704471




Sequencing Information
BG293LV06-43BG293LV06-44
Sample_IDBG293LV06-43BG293LV06-44
Sample NamePPIA-BG293LV06-43PPIA-BG293LV06-44
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads43,277,09935,497,833
total_aligned_reads39,812,17232,585,119
unique_aligned_reads37,392,41030,638,640
percent_uniqueAligned0.864020.86311
correlation_replicates0.9995290.999529
spikein_reads65,09060,438
percent_spikeins0.001500.00170
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30393040




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database