RBM14      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-29BG293LV06-30
idx00
TRCN#_or_BGC#TRCN0000072693TRCN0000072693
shRNA_or_gRNA_sequenceCCGGCCCAGGAGATGATCCTGTTAACTCGAGTTAACAGGATCATCTCCTGGGTTTTTGCCGGCCCAGGAGATGATCCTGTTAACTCGAGTTAACAGGATCATCTCCTGGGTTTTTG
PAM
NameRBM14RBM14
Sample_IDBG293LV06-29BG293LV06-30
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRBM14RBM14
qPCR_result65.866.6
Ave_qPCR66.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1011610117




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-29BG293LV06-30
Sample_IDBG293LV06-29BG293LV06-30
Sample Name
Sample NameRBM14-BG293LV06-29RBM14-BG293LV06-30
RBPRBM14RBM14
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1346613467




Library-Prep Information
BG293LV06-29BG293LV06-30
Sample #3334
Sample NameRBM14-BG293LV06-29RBM14-BG293LV06-30
Sample_Name_Alias
Index Well PositionA05B05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp271279
Peak_Molarity74.80106.00
libSampleQC_DNA_WellDNA_Library_set71/set1/A5.pngDNA_Library_set71/set1/B5.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/A5.pngRNA_Library_set71/set1/B5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-29BG293LV06-30
RBPRBM14RBM14
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44584459




Sequencing Information
BG293LV06-29BG293LV06-30
Sample_IDBG293LV06-29BG293LV06-30
Sample NameRBM14-BG293LV06-29RBM14-BG293LV06-30
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads31,744,25026,283,782
total_aligned_reads28,496,69723,597,903
unique_aligned_reads26,583,90622,131,162
percent_uniqueAligned0.837440.84201
correlation_replicates0.9675880.967588
spikein_reads142,03080,956
percent_spikeins0.004470.00308
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30273028




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database