TIAL1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-111BG293LV06-112
idx00
TRCN#_or_BGC#TRCN0000017211TRCN0000017211
shRNA_or_gRNA_sequenceCGGATATGGTATGGCAAGTTACGGATATGGTATGGCAAGTTA
PAM
NameTIAL1TIAL1
Sample_IDBG293LV06-111BG293LV06-112
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameTIAL1TIAL1
qPCR_result48.253.9
Ave_qPCR51.0
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1019810199




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-111BG293LV06-112
Sample_IDBG293LV06-111BG293LV06-112
Sample Name
Sample NameTIAL1-BG293LV06-111BTIAL1-BG293LV06-112B
RBPTIAL1TIAL1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1354813549




Library-Prep Information
BG293LV06-111BG293LV06-112
Sample #111112
Sample NameTIAL1-BG293LV06-111BTIAL1-BG293LV06-112B
Sample_Name_Alias
Index Well PositionG07H07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp264270
Peak_Molarity77.6055.60
libSampleQC_DNA_WellDNA_Library_set72/set1/G7.pngDNA_Library_set72/set1/H7.png
RIN9.89.9
libSample_RNA_WellRNA_Library_set72/set1/G7.pngRNA_Library_set72/set1/H7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-111BG293LV06-112
RBPTIAL1TIAL1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45364537




Sequencing Information
BG293LV06-111BG293LV06-112
Sample_IDBG293LV06-111BG293LV06-112
Sample NameTIAL1-BG293LV06-111BTIAL1-BG293LV06-112B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads51,768,96832,134,758
total_aligned_reads47,821,18229,431,879
unique_aligned_reads44,810,24427,533,893
percent_uniqueAligned0.865580.85683
correlation_replicates0.9945900.994590
spikein_reads126,78497,380
percent_spikeins0.002450.00303
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31053106




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database