CDC40      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-119BG293LV06-120
idx00
TRCN#_or_BGC#TRCN0000001189TRCN0000001189
shRNA_or_gRNA_sequenceCCGGGACCATGTTTGCTCCTGAGTTCTCGAGAACTCAGGAGCAAACATGGTCTTTTTCCGGGACCATGTTTGCTCCTGAGTTCTCGAGAACTCAGGAGCAAACATGGTCTTTTT
PAM
NameCDC40CDC40
Sample_IDBG293LV06-119BG293LV06-120
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameCDC40CDC40
qPCR_result77.380.5
Ave_qPCR78.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1020610207




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-119BG293LV06-120
Sample_IDBG293LV06-119BG293LV06-120
Sample Name
Sample NameCDC40-BG293LV06-119BCDC40-BG293LV06-120B
RBPCDC40CDC40
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1355613557




Library-Prep Information
BG293LV06-119BG293LV06-120
Sample #119120
Sample NameCDC40-BG293LV06-119BCDC40-BG293LV06-120B
Sample_Name_Alias
Index Well PositionG08H08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp276282
Peak_Molarity81.5060.60
libSampleQC_DNA_WellDNA_Library_set72/set1/G8.pngDNA_Library_set72/set1/H8.png
RIN9.89.8
libSample_RNA_WellRNA_Library_set72/set1/G8.pngRNA_Library_set72/set1/H8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-119BG293LV06-120
RBPCDC40CDC40
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45444545




Sequencing Information
BG293LV06-119BG293LV06-120
Sample_IDBG293LV06-119BG293LV06-120
Sample NameCDC40-BG293LV06-119BCDC40-BG293LV06-120B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads50,521,22159,389,150
total_aligned_reads47,951,39356,225,543
unique_aligned_reads45,197,81953,026,939
percent_uniqueAligned0.894630.89287
correlation_replicates0.9935670.993567
spikein_reads133,656224,140
percent_spikeins0.002650.00377
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31133114




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database