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CDC40
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-119
BG293LV06-120
idx
0
0
TRCN#_or_BGC#
TRCN0000001189
TRCN0000001189
shRNA_or_gRNA_sequence
CCGGGACCATGTTTGCTCCTGAGTTCTCGAGAACTCAGGAGCAAACATGGTCTTTTT
CCGGGACCATGTTTGCTCCTGAGTTCTCGAGAACTCAGGAGCAAACATGGTCTTTTT
PAM
Name
CDC40
CDC40
Sample_ID
BG293LV06-119
BG293LV06-120
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
CDC40
CDC40
qPCR_result
77.3
80.5
Ave_qPCR
78.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10206
10207
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-119
BG293LV06-120
Sample_ID
BG293LV06-119
BG293LV06-120
Sample Name
Sample Name
CDC40-BG293LV06-119B
CDC40-BG293LV06-120B
RBP
CDC40
CDC40
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13556
13557
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-119
BG293LV06-120
Sample #
119
120
Sample Name
CDC40-BG293LV06-119B
CDC40-BG293LV06-120B
Sample_Name_Alias
Index Well Position
G08
H08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
276
282
Peak_Molarity
81.50
60.60
libSampleQC_DNA_Well
DNA_Library_set72/set1/G8.png
DNA_Library_set72/set1/H8.png
RIN
9.8
9.8
libSample_RNA_Well
RNA_Library_set72/set1/G8.png
RNA_Library_set72/set1/H8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-119
BG293LV06-120
RBP
CDC40
CDC40
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4544
4545
Sequencing Information
BG293LV06-119
BG293LV06-120
Sample_ID
BG293LV06-119
BG293LV06-120
Sample Name
CDC40-BG293LV06-119B
CDC40-BG293LV06-120B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
50,521,221
59,389,150
total_aligned_reads
47,951,393
56,225,543
unique_aligned_reads
45,197,819
53,026,939
percent_uniqueAligned
0.89463
0.89287
correlation_replicates
0.993567
0.993567
spikein_reads
133,656
224,140
percent_spikeins
0.00265
0.00377
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3113
3114
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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