PCBP3      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-41BG293LV06-42
idx00
TRCN#_or_BGC#TRCN0000074700TRCN0000074700
shRNA_or_gRNA_sequenceCCGGCCTTGCCCAGTATCTCATCAACTCGAGTTGATGAGATACTGGGCAAGGTTTTTGCCGGCCTTGCCCAGTATCTCATCAACTCGAGTTGATGAGATACTGGGCAAGGTTTTTG
PAM
NamePCBP3PCBP3
Sample_IDBG293LV06-41BG293LV06-42
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePCBP3PCBP3
qPCR_result88.987.6
Ave_qPCR88.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1012810129




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-41BG293LV06-42
Sample_IDBG293LV06-41BG293LV06-42
Sample Name
Sample NamePCBP3-BG293LV06-41PCBP3-BG293LV06-42
RBPPCBP3PCBP3
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1347813479




Library-Prep Information
BG293LV06-41BG293LV06-42
Sample #4344
Sample NamePCBP3-BG293LV06-41PCBP3-BG293LV06-42
Sample_Name_Alias
Index Well PositionC06D06
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp274278
Peak_Molarity70.8078.60
libSampleQC_DNA_WellDNA_Library_set71/set1/C6.pngDNA_Library_set71/set1/D6.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set71/set1/C6.pngRNA_Library_set71/set1/D6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-41BG293LV06-42
RBPPCBP3PCBP3
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44684469




Sequencing Information
BG293LV06-41BG293LV06-42
Sample_IDBG293LV06-41BG293LV06-42
Sample NamePCBP3-BG293LV06-41PCBP3-BG293LV06-42
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads39,071,99135,401,746
total_aligned_reads36,159,46532,633,364
unique_aligned_reads33,804,83730,491,931
percent_uniqueAligned0.865190.86131
correlation_replicates0.9827300.982730
spikein_reads83,31477,192
percent_spikeins0.002130.00218
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30373038




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database