EIF4H      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-93BG293LV06-94
idx00
TRCN#_or_BGC#TRCN0000275601TRCN0000275601
shRNA_or_gRNA_sequenceCCGGGAGTGCATGTCAGCTGTTAACCTCGAGGTTAACAGCTGACATGCACTCTTTTTGCCGGGAGTGCATGTCAGCTGTTAACCTCGAGGTTAACAGCTGACATGCACTCTTTTTG
PAM
NameEIF4HEIF4H
Sample_IDBG293LV06-93BG293LV06-94
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameEIF4HEIF4H
qPCR_result90.983.7
Ave_qPCR87.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1018010181




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-93BG293LV06-94
Sample_IDBG293LV06-93BG293LV06-94
Sample Name
Sample NameEIF4H-BG293LV06-93BEIF4H-BG293LV06-94B
RBPEIF4HEIF4H
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1353013531




Library-Prep Information
BG293LV06-93BG293LV06-94
Sample #9394
Sample NameEIF4H-BG293LV06-93BEIF4H-BG293LV06-94B
Sample_Name_Alias
Index Well PositionE05F05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp273277
Peak_Molarity76.3087.70
libSampleQC_DNA_WellDNA_Library_set72/set1/E5.pngDNA_Library_set72/set1/F5.png
RIN9.79.8
libSample_RNA_WellRNA_Library_set72/set1/E5.pngRNA_Library_set72/set1/F5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-93BG293LV06-94
RBPEIF4HEIF4H
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45184519




Sequencing Information
BG293LV06-93BG293LV06-94
Sample_IDBG293LV06-93BG293LV06-94
Sample NameEIF4H-BG293LV06-93BEIF4H-BG293LV06-94B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads18,508,77326,701,083
total_aligned_reads16,253,20623,015,108
unique_aligned_reads15,190,85021,587,135
percent_uniqueAligned0.820740.80847
correlation_replicates0.9916860.991686
spikein_reads54,80283,752
percent_spikeins0.002960.00314
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30873088




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database