PPP1CA      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-57BG293LV06-58
idx00
TRCN#_or_BGC#TRCN0000002453TRCN0000002453
shRNA_or_gRNA_sequenceCCGGACTACGACCTTCTGCGACTATCTCGAGATAGTCGCAGAAGGTCGTAGTTTTTTCCGGACTACGACCTTCTGCGACTATCTCGAGATAGTCGCAGAAGGTCGTAGTTTTTT
PAM
NamePPP1CAPPP1CA
Sample_IDBG293LV06-57BG293LV06-58
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePPP1CAPPP1CA
qPCR_result87.487.4
Ave_qPCR87.4
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1014410145




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-57BG293LV06-58
Sample_IDBG293LV06-57BG293LV06-58
Sample Name
Sample NamePPP1CA-BG293LV06-57PPP1CA-BG293LV06-58
RBPPPP1CAPPP1CA
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1349413495




Library-Prep Information
BG293LV06-57BG293LV06-58
Sample #5960
Sample NamePPP1CA-BG293LV06-57PPP1CA-BG293LV06-58
Sample_Name_Alias
Index Well PositionC08D08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp281287
Peak_Molarity110.0091.40
libSampleQC_DNA_WellDNA_Library_set71/set1/C8.pngDNA_Library_set71/set1/D8.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set71/set1/C8.pngRNA_Library_set71/set1/D8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-57BG293LV06-58
RBPPPP1CAPPP1CA
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44844485




Sequencing Information
BG293LV06-57BG293LV06-58
Sample_IDBG293LV06-57BG293LV06-58
Sample NamePPP1CA-BG293LV06-57PPP1CA-BG293LV06-58
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads33,094,92436,813,052
total_aligned_reads30,199,34133,464,484
unique_aligned_reads28,299,33531,344,077
percent_uniqueAligned0.855100.85144
correlation_replicates0.9970470.997047
spikein_reads81,72079,758
percent_spikeins0.002470.00217
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30533054




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database