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PPP1CA
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-57
BG293LV06-58
idx
0
0
TRCN#_or_BGC#
TRCN0000002453
TRCN0000002453
shRNA_or_gRNA_sequence
CCGGACTACGACCTTCTGCGACTATCTCGAGATAGTCGCAGAAGGTCGTAGTTTTTT
CCGGACTACGACCTTCTGCGACTATCTCGAGATAGTCGCAGAAGGTCGTAGTTTTTT
PAM
Name
PPP1CA
PPP1CA
Sample_ID
BG293LV06-57
BG293LV06-58
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
PPP1CA
PPP1CA
qPCR_result
87.4
87.4
Ave_qPCR
87.4
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10144
10145
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-57
BG293LV06-58
Sample_ID
BG293LV06-57
BG293LV06-58
Sample Name
Sample Name
PPP1CA-BG293LV06-57
PPP1CA-BG293LV06-58
RBP
PPP1CA
PPP1CA
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13494
13495
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-57
BG293LV06-58
Sample #
59
60
Sample Name
PPP1CA-BG293LV06-57
PPP1CA-BG293LV06-58
Sample_Name_Alias
Index Well Position
C08
D08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
281
287
Peak_Molarity
110.00
91.40
libSampleQC_DNA_Well
DNA_Library_set71/set1/C8.png
DNA_Library_set71/set1/D8.png
RIN
10.0
10.0
libSample_RNA_Well
RNA_Library_set71/set1/C8.png
RNA_Library_set71/set1/D8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-57
BG293LV06-58
RBP
PPP1CA
PPP1CA
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4484
4485
Sequencing Information
BG293LV06-57
BG293LV06-58
Sample_ID
BG293LV06-57
BG293LV06-58
Sample Name
PPP1CA-BG293LV06-57
PPP1CA-BG293LV06-58
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
33,094,924
36,813,052
total_aligned_reads
30,199,341
33,464,484
unique_aligned_reads
28,299,335
31,344,077
percent_uniqueAligned
0.85510
0.85144
correlation_replicates
0.997047
0.997047
spikein_reads
81,720
79,758
percent_spikeins
0.00247
0.00217
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3053
3054
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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