Home
NEWS
Summary
Data Files
Search
FAQ
Admin Login
Top
PARN
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-27
BG293LV06-28
idx
0
0
TRCN#_or_BGC#
TRCN0000049744
TRCN0000049744
shRNA_or_gRNA_sequence
CCCAGACTCTTGGATACTAAACTCGAGTTTAGTATCCAAGAGTCTGGG
CCCAGACTCTTGGATACTAAACTCGAGTTTAGTATCCAAGAGTCTGGG
PAM
Name
PARN
PARN
Sample_ID
BG293LV06-27
BG293LV06-28
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
PARN
PARN
qPCR_result
66.5
61.5
Ave_qPCR
64.0
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10114
10115
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-27
BG293LV06-28
Sample_ID
BG293LV06-27
BG293LV06-28
Sample Name
Sample Name
PARN-BG293LV06-27
PARN-BG293LV06-28
RBP
PARN
PARN
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13464
13465
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-27
BG293LV06-28
Sample #
31
32
Sample Name
PARN-BG293LV06-27
PARN-BG293LV06-28
Sample_Name_Alias
Index Well Position
G04
H04
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
274
274
Peak_Molarity
82.80
65.50
libSampleQC_DNA_Well
DNA_Library_set71/set1/G4.png
DNA_Library_set71/set1/H4.png
RIN
9.9
10.0
libSample_RNA_Well
RNA_Library_set71/set1/G4.png
RNA_Library_set71/set1/H4.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-27
BG293LV06-28
RBP
PARN
PARN
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4456
4457
Sequencing Information
BG293LV06-27
BG293LV06-28
Sample_ID
BG293LV06-27
BG293LV06-28
Sample Name
PARN-BG293LV06-27
PARN-BG293LV06-28
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
35,313,034
43,476,492
total_aligned_reads
32,476,567
39,295,379
unique_aligned_reads
30,282,677
36,613,507
percent_uniqueAligned
0.85755
0.84214
correlation_replicates
0.994564
0.994564
spikein_reads
73,718
131,904
percent_spikeins
0.00209
0.00303
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3025
3026
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
Back