PARN-BG293LV06-27_S31_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3025 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29347 |
PARN-BG293LV06-27_S31_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3025 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29411 |
PARN-BG293LV06-27_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3025 | | | | | GRCh38 | V40 | PARN-BG293LV06-27_S31_L002_R1_001.filtered.trimmed.paired.fastq.gz,PARN-BG293LV06-27_S31_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29476 |
PARN-BG293LV06-27_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3025 | | | | | GRCh38 | V40 | PARN-BG293LV06-27_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29540 |
PARN-BG293LV06-27_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3025 | | | | | GRCh38 | V40 | PARN-BG293LV06-27_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29604 |
PARN-BG293LV06-27_Signal.Unique.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3025 | | | | | GRCh38 | V40 | PARN-BG293LV06-27_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29668 |
PARN-BG293LV06-27_quant.sf | ENCODE_DATA/set71/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3025 | | | | | GRCh38 | V40 | PARN-BG293LV06-27_S31_L002_R1_001.filtered.trimmed.paired.fastq.gz,PARN-BG293LV06-27_S31_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29732 |
PARN-BG293LV06-28_S32_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3026 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV06-1merged_S1_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29348 |
PARN-BG293LV06-28_S32_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set71/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 3026 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV06-1merged_S1_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV06-2merged_S2_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 29412 |
PARN-BG293LV06-28_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 3026 | | | | | GRCh38 | V40 | PARN-BG293LV06-28_S32_L002_R1_001.filtered.trimmed.paired.fastq.gz,PARN-BG293LV06-28_S32_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29477 |
PARN-BG293LV06-28_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3026 | | | | | GRCh38 | V40 | PARN-BG293LV06-28_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29541 |
PARN-BG293LV06-28_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 3026 | | | | | GRCh38 | V40 | PARN-BG293LV06-28_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29605 |
PARN-BG293LV06-28_Signal.Unique.strand-.bw | ENCODE_DATA/set71/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 3026 | | | | | GRCh38 | V40 | PARN-BG293LV06-28_Aligned.sortedByCoord.out.bam | | ENCORE2 | | 29669 |
PARN-BG293LV06-28_quant.sf | ENCODE_DATA/set71/salmon_ENCORE2_file_links | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 3026 | | | | | GRCh38 | V40 | PARN-BG293LV06-28_S32_L002_R1_001.filtered.trimmed.paired.fastq.gz,PARN-BG293LV06-28_S32_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 29733 |