PARN      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-27BG293LV06-28
idx00
TRCN#_or_BGC#TRCN0000049744TRCN0000049744
shRNA_or_gRNA_sequenceCCCAGACTCTTGGATACTAAACTCGAGTTTAGTATCCAAGAGTCTGGGCCCAGACTCTTGGATACTAAACTCGAGTTTAGTATCCAAGAGTCTGGG
PAM
NamePARNPARN
Sample_IDBG293LV06-27BG293LV06-28
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePARNPARN
qPCR_result66.561.5
Ave_qPCR64.0
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1011410115




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-27BG293LV06-28
Sample_IDBG293LV06-27BG293LV06-28
Sample Name
Sample NamePARN-BG293LV06-27PARN-BG293LV06-28
RBPPARNPARN
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1346413465




Library-Prep Information
BG293LV06-27BG293LV06-28
Sample #3132
Sample NamePARN-BG293LV06-27PARN-BG293LV06-28
Sample_Name_Alias
Index Well PositionG04H04
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp274274
Peak_Molarity82.8065.50
libSampleQC_DNA_WellDNA_Library_set71/set1/G4.pngDNA_Library_set71/set1/H4.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set71/set1/G4.pngRNA_Library_set71/set1/H4.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-27BG293LV06-28
RBPPARNPARN
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44564457




Sequencing Information
BG293LV06-27BG293LV06-28
Sample_IDBG293LV06-27BG293LV06-28
Sample NamePARN-BG293LV06-27PARN-BG293LV06-28
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads35,313,03443,476,492
total_aligned_reads32,476,56739,295,379
unique_aligned_reads30,282,67736,613,507
percent_uniqueAligned0.857550.84214
correlation_replicates0.9945640.994564
spikein_reads73,718131,904
percent_spikeins0.002090.00303
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30253026




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database