PRPF40A      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-107BG293LV06-108
idx00
TRCN#_or_BGC#TRCN0000247663TRCN0000247663
shRNA_or_gRNA_sequenceCCGGGCGATAATCAGTTCAACTAAACTCGAGTTTAGTTGAACTGATTATCGCTTTTTGCCGGGCGATAATCAGTTCAACTAAACTCGAGTTTAGTTGAACTGATTATCGCTTTTTG
PAM
NamePRPF40APRPF40A
Sample_IDBG293LV06-107BG293LV06-108
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePRPF40APRPF40A
qPCR_result85.984.3
Ave_qPCR85.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1019410195




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-107BG293LV06-107BG293LV06-108BG293LV06-108
Sample_IDBG293LV06-107BG293LV06-107BG293LV06-108BG293LV06-108
Sample Name
Sample NamePRPF40A-BG293LV06-107BPRPF40A-BG293LV06-107CPRPF40A-BG293LV06-108BPRPF40A-BG293LV06-108C
RBPPRPF40APRPF40APRPF40APRPF40A
Cell_Line293T293T293T293T
Exp UID
StatusSequencedSequencedSequencedSequenced
Status_date2024-10-162024-10-162024-10-162024-10-16
ProjectENCORE2ENCORE2ENCORE2ENCORE2
Note
ID13544135781354513579




Library-Prep Information
BG293LV06-107BG293LV06-107BG293LV06-108BG293LV06-108
Sample #10771088
Sample NamePRPF40A-BG293LV06-107BPRPF40A-BG293LV06-107CPRPF40A-BG293LV06-108BPRPF40A-BG293LV06-108C
Sample_Name_Alias
Index Well PositionC07G10D07H10
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-022024-10-022024-10-02
Lib_IDLib-241002Lib-241002Lib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp274288277282
Peak_Molarity19.7074.6086.5097.90
libSampleQC_DNA_WellDNA_Library_set72/set1/C7.pngDNA_Library_set72/set1/C7.pngDNA_Library_set72/set1/D7.pngDNA_Library_set72/set1/D7.png
RIN10.010.010.010.0
libSample_RNA_WellRNA_Library_set72/set1/C7.pngRNA_Library_set72/set1/C7.pngRNA_Library_set72/set1/D7.pngRNA_Library_set72/set1/D7.png
SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-042024-10-042024-10-04
Sample_IDBG293LV06-107BG293LV06-107BG293LV06-108BG293LV06-108
RBPPRPF40APRPF40APRPF40APRPF40A
Batch_IDBG293LV06BG293LV06BG293LV06BG293LV06
WB_result0.0000.0000.0000.000
Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBCBC
Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequence
ProjectENCORE2ENCORE2ENCORE2ENCORE2
ID4532456645334567




Sequencing Information
BG293LV06-107BG293LV06-107BG293LV06-108BG293LV06-108
Sample_IDBG293LV06-107BG293LV06-107BG293LV06-108BG293LV06-108
Sample NamePRPF40A-BG293LV06-107BPRPF40A-BG293LV06-107CPRPF40A-BG293LV06-108BPRPF40A-BG293LV06-108C
Pool IDPool-241004Pool-241004Pool-241004Pool-241004
LocalServer_folderset72set72set72set72
total_reads27,328,75823,340,71534,686,41126,293,211
total_aligned_reads24,853,56921,712,81330,806,33724,354,163
unique_aligned_reads23,147,57820,172,39828,683,05322,688,270
percent_uniqueAligned0.847000.864260.826920.86289
correlation_replicates0.9976770.9978040.9976770.997804
spikein_reads129,93051,424144,32457,066
percent_spikeins0.004750.002200.004160.00217
original_ReadLength101101101101
QC_StatusReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmit
ID3101313531023136




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database