NGRN      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-105BG293LV06-106
idx00
TRCN#_or_BGC#TRCN0000219779TRCN0000219779
shRNA_or_gRNA_sequenceCCGGGCTGCGTGGATAGATTCAAACCTCGAGGTTTGAATCTATCCACGCAGCTTTTTGCCGGGCTGCGTGGATAGATTCAAACCTCGAGGTTTGAATCTATCCACGCAGCTTTTTG
PAM
NameNGRNNGRN
Sample_IDBG293LV06-105BG293LV06-106
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameNGRNNGRN
qPCR_result60.165.6
Ave_qPCR62.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1019210193




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-105BG293LV06-106
Sample_IDBG293LV06-105BG293LV06-106
Sample Name
Sample NameNGRN-BG293LV06-105BNGRN-BG293LV06-106B
RBPNGRNNGRN
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1354213543




Library-Prep Information
BG293LV06-105BG293LV06-106
Sample #105106
Sample NameNGRN-BG293LV06-105BNGRN-BG293LV06-106B
Sample_Name_Alias
Index Well PositionA07B07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp274270
Peak_Molarity69.3083.80
libSampleQC_DNA_WellDNA_Library_set72/set1/A7.pngDNA_Library_set72/set1/B7.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set72/set1/A7.pngRNA_Library_set72/set1/B7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-105BG293LV06-106
RBPNGRNNGRN
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45304531




Sequencing Information
BG293LV06-105BG293LV06-106
Sample_IDBG293LV06-105BG293LV06-106
Sample NameNGRN-BG293LV06-105BNGRN-BG293LV06-106B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads55,337,61940,670,635
total_aligned_reads51,477,87437,648,332
unique_aligned_reads48,140,98035,271,587
percent_uniqueAligned0.869950.86725
correlation_replicates0.9962810.996281
spikein_reads310,958220,480
percent_spikeins0.005620.00542
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30993100




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database