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NGRN
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-105
BG293LV06-106
idx
0
0
TRCN#_or_BGC#
TRCN0000219779
TRCN0000219779
shRNA_or_gRNA_sequence
CCGGGCTGCGTGGATAGATTCAAACCTCGAGGTTTGAATCTATCCACGCAGCTTTTTG
CCGGGCTGCGTGGATAGATTCAAACCTCGAGGTTTGAATCTATCCACGCAGCTTTTTG
PAM
Name
NGRN
NGRN
Sample_ID
BG293LV06-105
BG293LV06-106
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
NGRN
NGRN
qPCR_result
60.1
65.6
Ave_qPCR
62.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10192
10193
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-105
BG293LV06-106
Sample_ID
BG293LV06-105
BG293LV06-106
Sample Name
Sample Name
NGRN-BG293LV06-105B
NGRN-BG293LV06-106B
RBP
NGRN
NGRN
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13542
13543
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-105
BG293LV06-106
Sample #
105
106
Sample Name
NGRN-BG293LV06-105B
NGRN-BG293LV06-106B
Sample_Name_Alias
Index Well Position
A07
B07
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
274
270
Peak_Molarity
69.30
83.80
libSampleQC_DNA_Well
DNA_Library_set72/set1/A7.png
DNA_Library_set72/set1/B7.png
RIN
9.9
10.0
libSample_RNA_Well
RNA_Library_set72/set1/A7.png
RNA_Library_set72/set1/B7.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-105
BG293LV06-106
RBP
NGRN
NGRN
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4530
4531
Sequencing Information
BG293LV06-105
BG293LV06-106
Sample_ID
BG293LV06-105
BG293LV06-106
Sample Name
NGRN-BG293LV06-105B
NGRN-BG293LV06-106B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
55,337,619
40,670,635
total_aligned_reads
51,477,874
37,648,332
unique_aligned_reads
48,140,980
35,271,587
percent_uniqueAligned
0.86995
0.86725
correlation_replicates
0.996281
0.996281
spikein_reads
310,958
220,480
percent_spikeins
0.00562
0.00542
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3099
3100
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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