EIF4B      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-15BG293LV06-16
idx00
TRCN#_or_BGC#TRCN0000062598TRCN0000062598
shRNA_or_gRNA_sequenceGCGGAGAAACACCTTGATCTTCTCGAGAAGATCAAGGTGTTTCTCCGCGCGGAGAAACACCTTGATCTTCTCGAGAAGATCAAGGTGTTTCTCCGC
PAM
NameEIF4BEIF4B
Sample_IDBG293LV06-15BG293LV06-16
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameEIF4BEIF4B
qPCR_result69.570.1
Ave_qPCR69.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1010210103




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-15BG293LV06-16
Sample_IDBG293LV06-15BG293LV06-16
Sample Name
Sample NameEIF4B-BG293LV06-15EIF4B-BG293LV06-16
RBPEIF4BEIF4B
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1345213453




Library-Prep Information
BG293LV06-15BG293LV06-16
Sample #1920
Sample NameEIF4B-BG293LV06-15EIF4B-BG293LV06-16
Sample_Name_Alias
Index Well PositionC03D03
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp272279
Peak_Molarity115.0087.90
libSampleQC_DNA_WellDNA_Library_set71/set1/C3.pngDNA_Library_set71/set1/D3.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set71/set1/C3.pngRNA_Library_set71/set1/D3.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-15BG293LV06-16
RBPEIF4BEIF4B
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44444445




Sequencing Information
BG293LV06-15BG293LV06-16
Sample_IDBG293LV06-15BG293LV06-16
Sample NameEIF4B-BG293LV06-15EIF4B-BG293LV06-16
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads37,512,03528,800,798
total_aligned_reads33,215,52726,220,017
unique_aligned_reads31,101,81924,478,746
percent_uniqueAligned0.829120.84993
correlation_replicates0.9782570.978257
spikein_reads96,08878,920
percent_spikeins0.002560.00274
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30133014




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database