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RBM42
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-85
BG293LV06-86
idx
0
0
TRCN#_or_BGC#
TRCN0000180790
TRCN0000180790
shRNA_or_gRNA_sequence
CCGGGCGTGAGATGAATGGGAAGTACTCGAGTACTTCCCATTCATCTCACGCTTTTTTG
CCGGGCGTGAGATGAATGGGAAGTACTCGAGTACTTCCCATTCATCTCACGCTTTTTTG
PAM
Name
RBM42
RBM42
Sample_ID
BG293LV06-85
BG293LV06-86
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
RBM42
RBM42
qPCR_result
97.8
86.6
Ave_qPCR
92.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10172
10173
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-85
BG293LV06-86
Sample_ID
BG293LV06-85
BG293LV06-86
Sample Name
Sample Name
RBM42-BG293LV06-85B
RBM42-BG293LV06-86B
RBP
RBM42
RBM42
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13522
13523
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-85
BG293LV06-86
Sample #
85
86
Sample Name
RBM42-BG293LV06-85B
RBM42-BG293LV06-86B
Sample_Name_Alias
Index Well Position
E04
F04
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
285
288
Peak_Molarity
81.80
100.00
libSampleQC_DNA_Well
DNA_Library_set72/set1/E4.png
DNA_Library_set72/set1/F4.png
RIN
9.9
9.8
libSample_RNA_Well
RNA_Library_set72/set1/E4.png
RNA_Library_set72/set1/F4.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-85
BG293LV06-86
RBP
RBM42
RBM42
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4510
4511
Sequencing Information
BG293LV06-85
BG293LV06-86
Sample_ID
BG293LV06-85
BG293LV06-86
Sample Name
RBM42-BG293LV06-85B
RBM42-BG293LV06-86B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
55,793,878
31,587,021
total_aligned_reads
51,940,603
29,540,866
unique_aligned_reads
48,460,927
27,741,977
percent_uniqueAligned
0.86857
0.87827
correlation_replicates
0.994534
0.994534
spikein_reads
211,606
107,332
percent_spikeins
0.00379
0.00340
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3079
3080
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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