RBM42      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-85BG293LV06-86
idx00
TRCN#_or_BGC#TRCN0000180790TRCN0000180790
shRNA_or_gRNA_sequenceCCGGGCGTGAGATGAATGGGAAGTACTCGAGTACTTCCCATTCATCTCACGCTTTTTTGCCGGGCGTGAGATGAATGGGAAGTACTCGAGTACTTCCCATTCATCTCACGCTTTTTTG
PAM
NameRBM42RBM42
Sample_IDBG293LV06-85BG293LV06-86
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRBM42RBM42
qPCR_result97.886.6
Ave_qPCR92.2
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1017210173




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-85BG293LV06-86
Sample_IDBG293LV06-85BG293LV06-86
Sample Name
Sample NameRBM42-BG293LV06-85BRBM42-BG293LV06-86B
RBPRBM42RBM42
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1352213523




Library-Prep Information
BG293LV06-85BG293LV06-86
Sample #8586
Sample NameRBM42-BG293LV06-85BRBM42-BG293LV06-86B
Sample_Name_Alias
Index Well PositionE04F04
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp285288
Peak_Molarity81.80100.00
libSampleQC_DNA_WellDNA_Library_set72/set1/E4.pngDNA_Library_set72/set1/F4.png
RIN9.99.8
libSample_RNA_WellRNA_Library_set72/set1/E4.pngRNA_Library_set72/set1/F4.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-85BG293LV06-86
RBPRBM42RBM42
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45104511




Sequencing Information
BG293LV06-85BG293LV06-86
Sample_IDBG293LV06-85BG293LV06-86
Sample NameRBM42-BG293LV06-85BRBM42-BG293LV06-86B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads55,793,87831,587,021
total_aligned_reads51,940,60329,540,866
unique_aligned_reads48,460,92727,741,977
percent_uniqueAligned0.868570.87827
correlation_replicates0.9945340.994534
spikein_reads211,606107,332
percent_spikeins0.003790.00340
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30793080




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database