LUC7L      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-103BG293LV06-104
idx00
TRCN#_or_BGC#TRCN0000001197TRCN0000001197
shRNA_or_gRNA_sequenceCCGGGAGGAAATCAGTGCGGAAGTTCTCGAGAACTTCCGCACTGATTTCCTCTTTTTCCGGGAGGAAATCAGTGCGGAAGTTCTCGAGAACTTCCGCACTGATTTCCTCTTTTT
PAM
NameLUC7LLUC7L
Sample_IDBG293LV06-103BG293LV06-104
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameLUC7LLUC7L
qPCR_result89.988.9
Ave_qPCR89.4
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1019010191




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-103BG293LV06-104
Sample_IDBG293LV06-103BG293LV06-104
Sample Name
Sample NameLUC7L-BG293LV06-103BLUC7L-BG293LV06-104B
RBPLUC7LLUC7L
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1354013541




Library-Prep Information
BG293LV06-103BG293LV06-104
Sample #103104
Sample NameLUC7L-BG293LV06-103BLUC7L-BG293LV06-104B
Sample_Name_Alias
Index Well PositionG06H06
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp278270
Peak_Molarity79.6076.40
libSampleQC_DNA_WellDNA_Library_set72/set1/G6.pngDNA_Library_set72/set1/H6.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set72/set1/G6.pngRNA_Library_set72/set1/H6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-103BG293LV06-104
RBPLUC7LLUC7L
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45284529




Sequencing Information
BG293LV06-103BG293LV06-104
Sample_IDBG293LV06-103BG293LV06-104
Sample NameLUC7L-BG293LV06-103BLUC7L-BG293LV06-104B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads31,906,02929,301,075
total_aligned_reads29,972,11827,182,824
unique_aligned_reads28,060,83325,435,695
percent_uniqueAligned0.879480.86808
correlation_replicates0.9958980.995898
spikein_reads113,400169,338
percent_spikeins0.003550.00578
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30973098




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database