SMNDC1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-91BG293LV06-92
idx00
TRCN#_or_BGC#TRCN0000369078TRCN0000369078
shRNA_or_gRNA_sequenceCCGGGAAAGTGAAATGGCAACAATTCTCGAGAATTGTTGCCATTTCACTTTCTTTTTGCCGGGAAAGTGAAATGGCAACAATTCTCGAGAATTGTTGCCATTTCACTTTCTTTTTG
PAM
NameSMNDC1SMNDC1
Sample_IDBG293LV06-91BG293LV06-92
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameSMNDC1SMNDC1
qPCR_result74.367.9
Ave_qPCR71.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1017810179




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-91BG293LV06-92
Sample_IDBG293LV06-91BG293LV06-92
Sample Name
Sample NameSMNDC1-BG293LV06-91BSMNDC1-BG293LV06-92B
RBPSMNDC1SMNDC1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1352813529




Library-Prep Information
BG293LV06-91BG293LV06-92
Sample #9192
Sample NameSMNDC1-BG293LV06-91BSMNDC1-BG293LV06-92B
Sample_Name_Alias
Index Well PositionC05D05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp275276
Peak_Molarity102.0090.20
libSampleQC_DNA_WellDNA_Library_set72/set1/C5.pngDNA_Library_set72/set1/D5.png
RIN9.89.9
libSample_RNA_WellRNA_Library_set72/set1/C5.pngRNA_Library_set72/set1/D5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-91BG293LV06-92
RBPSMNDC1SMNDC1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45164517




Sequencing Information
BG293LV06-91BG293LV06-92
Sample_IDBG293LV06-91BG293LV06-92
Sample NameSMNDC1-BG293LV06-91BSMNDC1-BG293LV06-92B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads94,288,19737,445,492
total_aligned_reads84,861,00533,967,262
unique_aligned_reads79,378,36231,813,901
percent_uniqueAligned0.841870.84961
correlation_replicates0.9713850.971385
spikein_reads344,980121,638
percent_spikeins0.003660.00325
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30853086




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database