SMNDC1

General Information

Gene Name       : SMNDC1
Gene ID             : ENSG00000119953.12
Essential Gene : Yes

Functions

Localization(RBPImage: SMNDC1)

Domains (AlphaFold: SMNDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMNDC1ENSG00000119953.1227.7524.0425.89ENCSR000AEF
HepG2SMNDC1ENSG00000119953.1216.1126.2321.17ENCSR985KAT
K562SMNDC1ENSG00000119953.1217.4420.2318.84ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 344ENCSR373ODCSMNDC1HepG2ReleasedENCAB616ASEENCSR388VKV  
eCLIPeCLIP: 445ENCSR658IQBSMNDC1K562ReleasedENCAB616ASEENCSR631CJA  
knockdown followed by RNA-seq SMNDC1-BGKLV13-K562ENCSR408SDLSMNDC1K562ReleasedENCSR815CVQ   shRNAKD% = 52.8,50.9
knockdown followed by RNA-seq SMNDC1-BGHLV14-HepG2ENCSR995ZGJSMNDC1HepG2ReleasedENCSR491FOC   shRNAKD% = 51.6,42.9






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
SMNDC1344HepG2ENCSR373ODCENCSR388VKVENCAB616ASERN078PW1ReleasedENCODE3
SMNDC1445K562ENCSR658IQBENCSR631CJAENCAB616ASERN078PW1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SMNDC1ENCAB616ASERN078PW1Released, ENCODE3Released, ENCODE3BGHLV14-49, Released, ENCODE3BGKLV13-15, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SMNDC1K562shRNAENCSR408SDLENCSR815CVQSMNDC1_BGKLV13_15,SMNDC1_BGKLV13_16NT_BGKLV13_1,NT_BGKLV13_252.8,50.9ReleasedENCODE3
SMNDC1HepG2shRNAENCSR995ZGJENCSR491FOCSMNDC1_BGHLV14-49,SMNDC1_BGHLV14-50NT_BGHLV14-1,NT_BGHLV14-251.6,42.9ReleasedENCODE3
SMNDC1293TshRNABG293LV05-97,BG293LV05-98BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
SMNDC1293TshRNASMNDC1-BG293LV05-99,SMNDC1-BG293LV05-100NT-BG293LV05-1,NT-BG293LV05-2,SubmittingENCORE2
SMNDC1293TshRNASMNDC1-BG293LV06-91B,SMNDC1-BG293LV06-92BNT-BG293LV06-1B,NT-BG293LV06-2B,SequencedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    SMNDC1: Click to RBP Image Database
  • Nuclei
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    SMNDC1Product_ID: RN078PW
    Lot_ID: 1
    Source: MBLI
    Target Name: SMNDC1-human    		 HepG2_MBLI_RN078PW_001_SMNDC1.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using SMNDC1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-SMNDC1 antibody (lanes under 'SMNDC1').
    		 SMNDC1_Secondary_Western.png<br>Caption: Western blot following shRNA against SMNDC1 in K562 and HepG2 whole cell lysate using SMNDC1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SMNDC1. Lanes 5-7 follow the same pattern, but in HepG2. SMNDC1 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_MBLI_RN078PW_001_SMNDC1.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using SMNDC1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 10% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-SMNDC1 antibody (lanes under 'SMNDC1').
    		 SMNDC1_Secondary_Western.png<br>Caption: Western blot following shRNA against SMNDC1 in K562 and HepG2 whole cell lysate using SMNDC1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SMNDC1. Lanes 5-7 follow the same pattern, but in HepG2. SMNDC1 protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets
    • SMNDC1 protein binds to 2,735 RNA regions.  





    Proteins bound to RNA
    • SMNDC1 RNA is bound by 8 proteins.  






    SMNDC1 protein has 2,735 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 2,735 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    SMNDC1chr1620544352054479-4.360243.41594K562ZNF598intron-Distal
    SMNDC1chr144558012945580157+3.3827811.70750K562PRPF39intron-Distal
    SMNDC1chr1187071138707117+3.0225617.89143K562RPL27Aintron-Distal
    SMNDC1chr12132402970132403043+5.004997.73335K562ULK15'-UTR,CDS,intron-Proximal
    SMNDC1chr202584366525843714-4.339928.98288K562FAM182B5'-UTR,intron-Distal
    SMNDC1chr1124149952415067+4.339923.79177K562CD81intron-Distal
    SMNDC1chr29755134397551348-4.111493.67527K562FAM178Bintron-Distal
    SMNDC1chr1918824271882487-3.088613.64523K562ABHD17A5'-UTR,intron-Distal
    SMNDC1chr134694862246948721-4.6588211.92079HepG2PPP1R2P4, KIAA0226Lintron-Distal
    SMNDC1chr63150888831508896-3.48609400.00000K562DDX39B, ATP6V1G2-DDX39Bintron-Distal,intron-Proximal
    SMNDC1chr168882925888829322-3.510443.23253K562PIEZO1intron-Distal
    SMNDC1chr34266286542662933+3.548738.29213K562NKTR5'-UTR,CDS,intron-Proximal
    SMNDC1chr33945000539450011+3.72532400.00000K562RPSAintron-Proximal
    SMNDC1chr119345498593454990+5.27088400.00000K562KIAA1731intron-Distal
    SMNDC1chr1266195166619529+4.90726400.00000K562NCAPD2intron-Distal
    SMNDC1chr1266196436619653+6.76425400.00000K562NCAPD2intron-Distal
    SMNDC1chr3160232903160232912-3.6153449.11492K562KPNA4intron-Distal
    SMNDC1chr195000104050001059+4.77940400.00000K562RPS11intron-Distal
    SMNDC1chr221950395019503995+4.389693.93512K562CDC45intron-Proximal
    SMNDC1chr173555033935550398-3.413343.05149K562ACACACDS,intron-Distal,intron-Proximal
    SMNDC1chr1173835466173835477-6.84013400.00000K562GAS5intron-Distal
    SMNDC1chr1270765477076556-5.82687400.00000K562PHB2intron-Distal,intron-Proximal
    SMNDC1chr12133135158133135216+4.405544.45611K562FBRSL1intron-Distal
    SMNDC1chr121650932165144+3.339923.48391K562SKIintron-Distal
    SMNDC1chr168565199685652060+3.578948.13909K562GSE1intron-Distal
    SMNDC1chr2234197439234197448+4.1662678.06288HepG2ATG16L1intron-Distal
    SMNDC1chr28636308186363119+3.5925765.93644K562PTCD3intron-Distal
    SMNDC1chr206149162161491743-3.263925.47455K562TCFL5CDS,intron-Distal,intron-Proximal
    SMNDC1chr163119955531199605+4.0836711.69776HepG2FUSintron-Proximal
    SMNDC1chr172705047227050496+5.64057400.00000K562RPL23Aintron-Distal,intron-Proximal
    SMNDC1chr168902351789023593-5.6123710.46652K562CBFA2T3intron-Distal
    SMNDC1chr1892346892452-3.775285.52332K562NOC2LCDS,intron-Distal,intron-Proximal
    SMNDC1chr72289629522896308+5.61722400.00000K562AC005682.5intron-Distal
    SMNDC1chr168885104888851099-4.535754.19541K562PIEZO1intron-Distal
    SMNDC1chr225002488250024931-3.804735.80286K562C22orf34intron-Distal
    SMNDC1chr168903386289033887-4.302924.71718K562CBFA2T3intron-Distal
    SMNDC1chr173390067333900711+3.363789.65474K562RP11-1094M14.11intron-Distal
    SMNDC1chr177612406176124115-4.285548.14072K562TMC6intron-Distal
    SMNDC1chr395167309516755+4.055416.13924K562SETD53'-UTR,CDS,intron-Proximal
    SMNDC1chr1613639461364040+3.065817.89073K562UBE2I3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal
    SMNDC1chrX3995164739951719-4.187494.38082K562BCORintron-Distal
    SMNDC1chr35272295852722970+4.4579513.35427K562GNL3intron-Distal,intron-Proximal
    SMNDC1chr194555598545556076+4.368544.19541K562CLASRPCDS,intron-Distal,intron-Proximal
    SMNDC1chr122050582205132+4.442234.70425K562SKIintron-Distal
    SMNDC1chr168903338089033434-4.777155.86588K562CBFA2T3intron-Distal
    SMNDC1chr11122929622122929632-4.0647371.80338K562HSPA85'-UTR,intron-Distal,intron-Proximal
    SMNDC1chr3128216206128216260+3.258176.00860K562RP11-475N22.4intron-Distal
    SMNDC1chr2101889403101889425-6.19970400.00000K562RNF149intron-Distal,intron-Proximal
    SMNDC1chr1614227081422810-4.589965.86588K562UNKLintron-Distal
    SMNDC1chr74514426045144364-4.7175034.57612K562TBRG4CDS,intron-Distal,intron-Proximal
    SMNDC1chr174146470641464715-5.2357028.37017HepG2LINC00910intron-Distal
    SMNDC1chr2234184632234184635+5.75655400.00000HepG2ATG16L1intron-Distal
    SMNDC1chr45357948753579496+3.1954459.42253K562DANCRintron-Distal
    SMNDC1chr126990925169909375+3.336483.23253K562FRS2intron-Distal
    SMNDC1chr17625517876255202+4.00807400.00000K562RABGGTBintron-Distal
    SMNDC1chr222447210324472151+4.021203.79177K562CABIN1CDS,intron-Proximal
    SMNDC1chr195906031059060348+3.785543.23253K562TRIM28intron-Proximal
    SMNDC1chr114678394546783947-5.48737400.00000K562CKAP5intron-Distal
    SMNDC1chr10135215580135215655+3.632404.68890K562MTG1, RP11-108K14.8CDS,intron-Proximal
    SMNDC1chr161523762715237696-4.228723.15719K562PKD1P6intron-Distal
    SMNDC1chr16841733841783+3.190324.77135K562CHTF18intron-Distal,intron-Proximal
    SMNDC1chr112401591240269-5.354798.28233K562ACAP3intron-Distal
    SMNDC1chr19802606802669+3.664507.58117K562PTBP1intron-Distal
    SMNDC1chr1614243281424431-3.462484.85515K562UNKLintron-Distal
    SMNDC1chr412415941241643-3.439575.59224K562CTBP1intron-Distal
    SMNDC1chr168856025588560298+3.641503.99122K562ZFPM1intron-Distal
    SMNDC1chr3160232849160232852-4.01638400.00000K562KPNA4intron-Distal
    SMNDC1chr177455492074554948+3.5980659.15590K562SNHG16intron-Distal,intron-Proximal
    SMNDC1chr114678395746783962-4.78732400.00000K562CKAP5intron-Distal
    SMNDC1chr9139426786139426848-3.786463.15719K562NOTCH1intron-Distal
    SMNDC1chr168564851285648537+3.397136.08678K562GSE1intron-Distal
    SMNDC1chrX4843463548434725+3.7982726.19764K562RBM3CDS,intron-Proximal
    SMNDC1chr14382671143826762+5.286469.64959K562CDC20intron-Proximal
    SMNDC1chr177947955279479606-4.6255010.48558K562ACTG15'-UTR,intron-Distal
    SMNDC1chr755695425569600-4.5589129.37809K562ACTB5'-UTR,intron-Distal
    SMNDC1chr156663960566639617-3.066337.24160HepG2TIPINintron-Distal
    SMNDC1chr191022045310220507+5.4595086.49878K562PPAN-P2RY11, PPANintron-Distal,intron-Proximal
    SMNDC1chr1922701182270139+4.656888.38709K562OAZ1intron-Distal
    SMNDC1chr1914194271419460+3.656054.68890K562DAZAP1intron-Distal
    SMNDC1chr2234197447234197458+4.1800126.41246K562ATG16L1intron-Distal
    SMNDC1chr19573084573158+5.112088.28233K562BSGintron-Distal
    SMNDC1chr11811757811759+3.3717748.51503K562RPLP2intron-Distal
    SMNDC1chr122024952202562+4.090566.92539K562SKIintron-Distal
    SMNDC1chr5138614532138614547+4.58679400.00000K562MATR3intron-Distal
    SMNDC1chr412386811238737-3.547446.83221K562CTBP1intron-Distal
    SMNDC1chr114678396346783969-4.59407400.00000K562CKAP5intron-Distal
    SMNDC1chr12710551027105547+3.428694.13733K562ARID1A3'-UTR,CDS,intron-Proximal
    SMNDC1chr168568766385687737+3.7843811.83477K562GSE1intron-Distal
    SMNDC1chr168903626689036323-3.658638.12066K562CBFA2T3intron-Distal
    SMNDC1chr2234197561234197572+5.0692552.09385K562ATG16L1intron-Distal
    SMNDC1chr16587438587497+4.157715.79583K562CAPN15intron-Distal
    SMNDC1chr111709735617097360-5.1883876.04996K562RPS13intron-Distal
    SMNDC1chr2234184568234184577+6.52060400.00000K562ATG16L1intron-Distal
    SMNDC1chr1150523118150523150+4.554817.79386K562AL356356.1, ADAMTSL4CDS,intron-Distal
    SMNDC1chr125699806456998107-3.979973.67527K562BAZ2ACDS,intron-Distal,intron-Proximal
    SMNDC1chr2216296688216296730-3.586228.06034HepG2FN1intron-Distal,intron-Proximal
    SMNDC1chr156679518666795198-3.72497400.00000K562RPL4intron-Distal,intron-Proximal
    SMNDC1chr225002193750021975-4.996757.95702K562C22orf34intron-Distal
    SMNDC1chr8144675399144675438-4.748494.45611K562EEF1Dintron-Distal
    SMNDC1chr29753464797534716-4.3029213.24797K562SEMA4Cintron-Distal




    8 proteins are bound to SMNDC1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr10112053777112053823-3'-UTR,intron-Distal,intron-Proximal4.044575.70180K562PUM2
    chr10112053003112053045-3'-UTR,intron-Distal4.8769918.00784K562PUM2
    chr10112052939112053003-3'-UTR,intron-Distal5.1350354.76095K562PUM2
    chr10112053078112053125-3'-UTR,intron-Distal5.2273719.79724K562PUM2
    chr10112052942112052993-3'-UTR,intron-Distal4.075679.04183HepG2FUBP3
    chr10112064491112064509-5'-UTR,intron-Distal,intron-Proximal3.981345.35619K562AQR
    chr10112064548112064626-5'-UTR,intron-Distal,intron-Proximal3.352593.77784K562RBM15
    chr10112064449112064491-5'-UTR,intron-Distal,intron-Proximal5.653077.28294K562AQR
    chr10112055035112055134-CDS,intron-Distal3.906385.65086HepG2BCLAF1
    chr10112057437112057488-CDS,intron-Distal,intron-Proximal3.272666.73886K562ZNF622
    chr10112058415112058546-CDS,intron-Distal,intron-Proximal3.033786.64701HepG2BCLAF1
    chr10112053942112054029-CDS,intron-Distal3.564425.56491HepG2BCLAF1
    chr10112057340112057437-CDS,intron-Distal3.458537.83156K562ZNF622
    chr10112053956112054031-CDS,intron-Distal3.087264.80218K562UCHL5
    chr10112058404112058433-CDS,intron-Distal,intron-Proximal3.190923.55138K562ZNF622
    chr10112057337112057488-CDS,intron-Distal,intron-Proximal3.141449.96629K562UCHL5
    chr10112058406112058454-CDS,intron-Distal,intron-Proximal3.183584.59873K562UCHL5
    chr10112057325112057427-CDS,intron-Distal,intron-Proximal3.813177.28307HepG2BCLAF1
    chr10112057235112057314-intron-Distal,intron-Proximal3.942173.12843K562PRPF8
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein SMNDC1 and its RNA.



    Diffrential Expression
    • 3,554 differentially expressed genes after Knockdown/Knockout SMNDC1 protein.  





    • 96 RBPs can affect the levels of SMNDC1.  







    3,554 differentially expressed genes after Knockdown/Knockout SMNDC1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 3,554 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TSPAN6ENSG00000000003.101594.400302089.20360-0.389902.269001.41070HepG2SMNDC1
    C1orf112ENSG00000000460.12246.71160393.22870-0.672503.733202.60760HepG2SMNDC1
    GCLCENSG00000001084.61608.261201154.899700.477603.024002.01900HepG2SMNDC1
    CYP51A1ENSG00000001630.111859.360203692.94160-0.9900011.996509.93210HepG2SMNDC1
    BADENSG00000002330.9114.6273047.953501.257102.173601.33590HepG2SMNDC1
    LASP1ENSG00000002834.139091.798006099.543700.575804.773503.48360HepG2SMNDC1
    DBNDD1ENSG00000003249.91068.27430581.070500.878404.373903.15170HepG2SMNDC1
    TFPIENSG00000003436.1012936.573309361.386900.466603.223502.18010HepG2SMNDC1
    PLXND1ENSG00000004399.82717.582901552.878900.807307.518605.88890HepG2SMNDC1
    KDM1AENSG00000004487.112601.334103363.64970-0.370802.170001.33280HepG2SMNDC1
    RECQLENSG00000004700.11584.34370795.01460-0.444202.389001.50450HepG2SMNDC1
    DHX33ENSG00000005100.8931.965201338.32090-0.522103.422602.34480HepG2SMNDC1
    ACSM3ENSG00000005187.7712.62220980.80550-0.460802.496101.59050HepG2SMNDC1
    SPPL2BENSG00000005206.12460.55340289.019500.672103.483102.39320HepG2SMNDC1
    PON1ENSG00000005421.429.3163010.670901.457902.211401.36500HepG2SMNDC1
    ABCB4ENSG00000005471.11590.08130814.86200-0.465602.591101.66580HepG2SMNDC1
    RHBDD2ENSG00000005486.12609.08240305.920500.993405.872704.43900HepG2SMNDC1
    ZNF195ENSG00000005801.12588.04850415.789500.500002.661201.72440HepG2SMNDC1
    ASB4ENSG00000005981.8315.2755076.430202.044306.773205.22180HepG2SMNDC1
    C19orf60ENSG00000006015.1389.9934044.987701.000203.015002.01060HepG2SMNDC1
    OSBPL7ENSG00000006025.7315.06980166.785500.917602.695501.75270HepG2SMNDC1
    MAP3K14ENSG00000006062.9160.9235073.231501.135705.489504.10990HepG2SMNDC1
    TMEM132AENSG00000006118.10838.90720509.975700.718002.612101.68400HepG2SMNDC1
    CX3CL1ENSG00000006210.63281.020501775.575300.885806.917505.34990HepG2SMNDC1
    TNFRSF12AENSG00000006327.91136.71010384.756501.5627022.5671019.85270HepG2SMNDC1
    DLX6ENSG00000006377.966.83750157.16360-1.233506.019304.56550HepG2SMNDC1
    RALAENSG00000006451.3451.37100645.15600-0.515302.874201.89760HepG2SMNDC1
    BAIAP2L1ENSG00000006453.91039.98210742.977000.485102.899101.91840HepG2SMNDC1
    GGCTENSG00000006625.13199.44940475.95460-1.2548011.399509.39550HepG2SMNDC1
    DBF4ENSG00000006634.3283.68180413.92170-0.545102.718901.77220HepG2SMNDC1
    IFRD1ENSG00000006652.9773.78840501.455400.625704.133102.94500HepG2SMNDC1
    ARHGAP44ENSG00000006740.1238.0332087.24530-1.197803.800502.66410HepG2SMNDC1
    ARSDENSG00000006756.11472.44370290.878100.699604.263403.05680HepG2SMNDC1
    CCDC124ENSG00000007080.6331.14590149.399301.148202.312801.44570HepG2SMNDC1
    TRAPPC6AENSG00000007255.6131.5567052.178101.334106.176604.70320HepG2SMNDC1
    PAX6ENSG00000007372.1676.6212022.374201.775805.443704.06910HepG2SMNDC1
    RPUSD1ENSG00000007376.3192.2726065.562501.552103.752102.62350HepG2SMNDC1
    RHBDF1ENSG00000007384.11290.89360165.074800.817302.563801.64300HepG2SMNDC1
    BAIAP3ENSG00000007516.9147.9858082.942200.835203.252602.20430HepG2SMNDC1
    TSR3ENSG00000007520.3239.01110149.134000.680403.100402.08030HepG2SMNDC1
    PIGQENSG00000007541.10229.20790132.636000.789102.295801.43250HepG2SMNDC1
    TEAD3ENSG00000007866.14959.24880693.443200.468002.232901.38180HepG2SMNDC1
    JARID2ENSG00000008083.9421.52710857.14920-1.023909.953008.07250HepG2SMNDC1
    AASSENSG00000008311.10330.48240565.97620-0.776204.416003.18830HepG2SMNDC1
    SS18L2ENSG00000008324.6122.34330192.71600-0.655502.572601.65070HepG2SMNDC1
    ST3GAL1ENSG00000008513.10906.101401500.16100-0.727406.138304.66940HepG2SMNDC1
    IL32ENSG00000008517.123527.282501871.421300.9143010.387008.46030HepG2SMNDC1
    PKD1ENSG00000008710.13741.05800377.214900.974102.864201.89060HepG2SMNDC1
    UBE3CENSG00000009335.131791.817001306.147400.456002.864601.89070HepG2SMNDC1
    MASP2ENSG00000009724.12197.36230117.589900.747002.283101.42290HepG2SMNDC1
    NCAPD2ENSG00000010292.82167.835103597.79900-0.730906.859605.29670HepG2SMNDC1
    HIVEP2ENSG00000010818.41769.886701239.549800.513703.439402.35530HepG2SMNDC1
    LYPLA2ENSG00000011009.61488.11380771.989900.946703.476202.38690HepG2SMNDC1
    APBA3ENSG00000011132.7202.98730114.673100.823802.547801.63010HepG2SMNDC1
    RNF216ENSG00000011275.141618.002301044.732200.631004.925103.61360HepG2SMNDC1
    ANLNENSG00000011426.61179.534002350.06070-0.9945011.473409.46370HepG2SMNDC1
    WIZENSG00000011451.13654.71130356.387900.877304.196202.99880HepG2SMNDC1
    TMEM159ENSG00000011638.698.16320162.21070-0.724602.691401.74910HepG2SMNDC1
    BRCA1ENSG00000012048.15576.584901010.55030-0.809506.874705.31120HepG2SMNDC1
    ERCC1ENSG00000012061.11691.25490431.222000.680702.764101.80700HepG2SMNDC1
    CD22ENSG00000012124.1043.7165015.754101.472403.030202.02410HepG2SMNDC1
    SEMA3BENSG00000012171.133681.595701718.969401.0987010.594908.65050HepG2SMNDC1
    MBTPS2ENSG00000012174.7547.35400801.14670-0.549602.315401.44770HepG2SMNDC1
    EXTL3ENSG00000012232.4964.42390642.986000.584803.929102.77010HepG2SMNDC1
    NR1H4ENSG00000012504.9459.38180897.85690-0.966808.169806.48070HepG2SMNDC1
    ELOVL5ENSG00000012660.91904.081802578.72650-0.437602.801501.83880HepG2SMNDC1
    KDM5DENSG00000012817.111979.368301385.000000.515103.529702.43350HepG2SMNDC1
    CALCOCO1ENSG00000012822.111296.77990959.122700.435002.509801.60140HepG2SMNDC1
    UBR7ENSG00000012963.9469.74360678.98110-0.531503.055602.04530HepG2SMNDC1
    MAN2B2ENSG00000013288.4659.05630479.815000.457802.399901.51210HepG2SMNDC1
    MVPENSG00000013364.141056.53150555.894100.926403.790802.65790HepG2SMNDC1
    PGM3ENSG00000013375.111877.570102451.51100-0.384802.261001.40450HepG2SMNDC1
    DNASE1L1ENSG00000013563.9260.13420121.064001.103406.931105.36210HepG2SMNDC1
    CAPN1ENSG00000014216.111642.779801115.465600.558402.177801.33930HepG2SMNDC1
    MDH1ENSG00000014641.132586.037803345.44740-0.371502.174401.33650HepG2SMNDC1
    COX15ENSG00000014919.8516.63730814.08200-0.656004.568403.31240HepG2SMNDC1
    CCDC88CENSG00000015133.14516.59850309.892800.737204.898003.58840HepG2SMNDC1
    BIDENSG00000015475.14449.23730220.930301.023807.967106.30190HepG2SMNDC1
    MATR3ENSG00000015479.136422.920008242.96770-0.359902.172201.33460HepG2SMNDC1
    ATP2C1ENSG00000017260.151089.793001538.88350-0.497803.272502.22150HepG2SMNDC1
    SRCIN1ENSG00000017373.11266.23250173.638500.616502.795201.83320HepG2SMNDC1
    WWTR1ENSG00000018408.103416.840802593.107200.397902.398101.51100HepG2SMNDC1
    PHLDB1ENSG00000019144.12666.28750420.046500.665503.150902.12140HepG2SMNDC1
    CYP24A1ENSG00000019186.5502.35360339.874100.563602.718201.77190HepG2SMNDC1
    CD74ENSG00000019582.102164.650501424.775200.603303.286602.23310HepG2SMNDC1
    ZRANB1ENSG00000019995.6644.87710915.75420-0.505903.043502.03530HepG2SMNDC1
    NCDNENSG00000020129.11352.56760156.216301.174307.212405.61560HepG2SMNDC1
    MNAT1ENSG00000020426.6377.77960544.01150-0.526102.825001.85830HepG2SMNDC1
    SAMD4AENSG00000020577.91643.706901066.140500.624504.752303.46490HepG2SMNDC1
    MRE11AENSG00000020922.8433.78580696.66220-0.683504.668103.39250HepG2SMNDC1
    SLC7A9ENSG00000021488.826.7327054.41650-1.025402.145801.31350HepG2SMNDC1
    RNH1ENSG00000023191.12997.62320480.515601.053803.228402.18440HepG2SMNDC1
    BIRC3ENSG00000023445.9289.3574084.964401.7678015.5735013.24650HepG2SMNDC1
    DERAENSG00000023697.8439.55450609.62660-0.471902.455801.55790HepG2SMNDC1
    GCLMENSG00000023909.5621.57010368.520900.754105.336103.97660HepG2SMNDC1
    DEPDC1ENSG00000024526.12264.12210489.08670-0.888906.421904.91520HepG2SMNDC1
    TOMM34ENSG00000025772.71542.97590922.593300.741806.452004.94170HepG2SMNDC1
    FASENSG00000026103.15289.92380190.939700.602502.719901.77300HepG2SMNDC1
    RNASET2ENSG00000026297.112631.072803560.08570-0.436302.846001.87490HepG2SMNDC1
    IFNGR1ENSG00000027697.82543.015901877.973900.437302.743001.79090HepG2SMNDC1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    96 RBPs can affect the gene expression of SMNDC1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SMNDC1ENSG00000119953.8665.95560915.75020-0.459503.727903.04400HepG2BOP1
    SMNDC1ENSG00000119953.8600.33830840.70420-0.485803.593102.82010HepG2CPSF6
    SMNDC1ENSG00000119953.8366.84420480.93080-0.390702.229401.61320HepG2DDX21
    SMNDC1ENSG00000119953.8698.891001060.41600-0.601505.232604.39600HepG2DDX3X
    SMNDC1ENSG00000119953.8374.38390508.23510-0.441003.397202.62340HepG2DNAJC21
    SMNDC1ENSG00000119953.8406.05380503.71940-0.310902.291001.68540HepG2DNAJC2
    SMNDC1ENSG00000119953.8453.11370875.68580-0.9505010.715309.59590HepG2EIF2S1
    SMNDC1ENSG00000119953.8545.59340967.68870-0.826708.035006.94800HepG2EIF4A3
    SMNDC1ENSG00000119953.8698.91940942.27050-0.431002.203001.58620HepG2EIF4B
    SMNDC1ENSG00000119953.8502.87850839.66730-0.739605.933404.84820HepG2FIP1L1
    SMNDC1ENSG00000119953.8765.81620976.49960-0.350602.133101.52200HepG2FXR1
    SMNDC1ENSG00000119953.8561.10410905.77170-0.690906.110005.13780HepG2G3BP1
    SMNDC1ENSG00000119953.8690.80090961.69060-0.477303.590002.56940HepG2G3BP2
    SMNDC1ENSG00000119953.8432.48570952.99170-1.1398014.3581013.00890HepG2GPKOW
    SMNDC1ENSG00000119953.8388.02760513.10390-0.403102.405201.79920HepG2HNRNPA1
    SMNDC1ENSG00000119953.8443.74640656.94070-0.566003.353301.67110HepG2HNRNPD
    SMNDC1ENSG00000119953.8519.57270680.02210-0.388302.295101.63780HepG2HNRNPF
    SMNDC1ENSG00000119953.8712.97650882.97800-0.308503.285002.55540HepG2HNRNPL
    SMNDC1ENSG00000119953.8557.68400909.45870-0.705606.854705.91480HepG2HNRNPLL
    SMNDC1ENSG00000119953.8338.87940566.95130-0.742509.437008.36790HepG2HNRNPU
    SMNDC1ENSG00000119953.8490.71370669.63580-0.448503.322102.53450HepG2IGF2BP1
    SMNDC1ENSG00000119953.8598.16580920.67050-0.622105.531404.60710HepG2IGF2BP2
    SMNDC1ENSG00000119953.8442.44180579.12360-0.388403.589502.76450HepG2ILF2
    SMNDC1ENSG00000119953.8508.11880739.37260-0.541102.940401.56750HepG2ILF3
    SMNDC1ENSG00000119953.8613.04680926.08700-0.595203.917402.70610HepG2KHSRP
    SMNDC1ENSG00000119953.8901.168201198.59790-0.411502.457301.67680HepG2LARP4
    SMNDC1ENSG00000119953.8760.85200976.84120-0.360502.200301.61280HepG2MAGOH
    SMNDC1ENSG00000119953.8457.78980679.59800-0.570004.933803.87450HepG2MSI2
    SMNDC1ENSG00000119953.8554.69790927.55590-0.741705.082503.74380HepG2MTPAP
    SMNDC1ENSG00000119953.8586.974401005.40480-0.776407.635606.60810HepG2NCBP2
    SMNDC1ENSG00000119953.8564.78410961.15800-0.767107.294406.06890HepG2NOL12
    SMNDC1ENSG00000119953.8599.63610895.29210-0.578304.712903.78240HepG2PABPC4
    SMNDC1ENSG00000119953.8590.45370841.79250-0.511604.126303.41250HepG2PCBP1
    SMNDC1ENSG00000119953.8393.46320505.67690-0.362002.474501.77340HepG2PPIL4
    SMNDC1ENSG00000119953.8703.04130531.372100.403803.684302.80360HepG2PRPF4
    SMNDC1ENSG00000119953.8661.16510491.285200.428302.209101.48490HepG2PRPF8
    SMNDC1ENSG00000119953.8713.52490856.51350-0.263501.996001.51780HepG2PTBP1
    SMNDC1ENSG00000119953.8726.39690917.49530-0.336902.469601.90250HepG2PUF60
    SMNDC1ENSG00000119953.8775.02850973.94520-0.329603.992303.30780HepG2PUM1
    SMNDC1ENSG00000119953.8733.58220973.24410-0.407803.840703.05380HepG2PUM2
    SMNDC1ENSG00000119953.8519.36340639.29440-0.299702.371801.79040HepG2PUS1
    SMNDC1ENSG00000119953.8722.01670927.71450-0.361603.238902.57070HepG2QKI
    SMNDC1ENSG00000119953.81266.73070958.170700.402704.713704.08320HepG2RBM22
    SMNDC1ENSG00000119953.8677.08210841.92680-0.314402.244001.63120HepG2RBM25
    SMNDC1ENSG00000119953.8792.46530953.25210-0.266502.269501.76950HepG2NELFE
    SMNDC1ENSG00000119953.8508.46170761.54370-0.582803.612002.69830HepG2RPS3A
    SMNDC1ENSG00000119953.8737.73890486.006300.602004.813303.80880HepG2RRP9
    SMNDC1ENSG00000119953.8400.28680504.90070-0.335002.384401.77950HepG2SAFB2
    SMNDC1ENSG00000119953.81262.28780697.622200.855408.167706.96380HepG2SF3A3
    SMNDC1ENSG00000119953.8644.41270900.17750-0.482203.868103.04550HepG2SF3B1
    SMNDC1ENSG00000119953.8718.35300891.81620-0.312102.907402.30430HepG2SF3B4
    SMNDC1ENSG00000119953.8611.82100879.70090-0.523907.503306.43490HepG2SLBP
    SMNDC1ENSG00000119953.8342.24850597.44460-0.803805.838204.41210HepG2SMNDC1
    SMNDC1ENSG00000119953.8606.773701001.60780-0.723104.801503.75890HepG2SNRNP70
    SMNDC1ENSG00000119953.81448.105201082.208300.420106.459105.78120HepG2SRFBP1
    SMNDC1ENSG00000119953.8704.20760905.87310-0.363303.756003.04790HepG2SRSF5
    SMNDC1ENSG00000119953.8542.90040668.07090-0.299301.956401.36030HepG2SRSF7
    SMNDC1ENSG00000119953.8781.16220939.59530-0.266402.436801.94940HepG2SSB
    SMNDC1ENSG00000119953.8443.69070567.00600-0.353802.261901.40780HepG2SUPT6H
    SMNDC1ENSG00000119953.8415.40600633.74430-0.609402.898102.20860HepG2SUPV3L1
    SMNDC1ENSG00000119953.8565.71520886.47240-0.648006.376305.33620HepG2TARDBP
    SMNDC1ENSG00000119953.8295.07440424.81880-0.525802.445601.50110HepG2TFIP11
    SMNDC1ENSG00000119953.8236.38050550.93380-1.2208017.9665016.89660HepG2TIAL1
    SMNDC1ENSG00000119953.8343.23370555.82150-0.695408.609107.70170HepG2TRIM56
    SMNDC1ENSG00000119953.8685.73390896.32700-0.386403.098102.16900HepG2TUFM
    SMNDC1ENSG00000119953.81126.33800718.295700.648903.920203.17740HepG2U2AF1
    SMNDC1ENSG00000119953.8683.00730948.73020-0.474103.152802.25950HepG2UBE2L3
    SMNDC1ENSG00000119953.8495.43640618.68550-0.320502.565801.88940HepG2UPF1
    SMNDC1ENSG00000119953.8800.55260597.314600.422404.394603.66830HepG2UTP3
    SMNDC1ENSG00000119953.8426.68710623.84960-0.548002.359301.68520HepG2XRN2
    SMNDC1ENSG00000119953.8854.22520680.433900.328103.544202.94650HepG2ZNF622
    SMNDC1ENSG00000119953.81817.13460937.684500.9544029.4812027.72730K562AGGF1
    SMNDC1ENSG00000119953.81445.118301030.397600.487902.743701.76680K562AKAP8
    SMNDC1ENSG00000119953.81486.99210975.709200.607807.666306.53040K562AKAP8L
    SMNDC1ENSG00000119953.82375.735701343.016900.8228013.4818012.32510K562AQR
    SMNDC1ENSG00000119953.81357.279301023.765000.406705.035503.76250K562ATP5C1
    SMNDC1ENSG00000119953.81435.423701049.895800.451106.462305.03790K562DKC1
    SMNDC1ENSG00000119953.8942.36560619.719100.604605.832304.47590K562EFTUD2
    SMNDC1ENSG00000119953.8638.26260863.41060-0.435904.963803.31860K562EIF2S1
    SMNDC1ENSG00000119953.8694.07410917.78310-0.403103.637702.83260K562EIF2S2
    SMNDC1ENSG00000119953.8972.32620663.630300.551004.187502.88260K562EIF3D
    SMNDC1ENSG00000119953.8566.86060739.56000-0.383703.274201.99500K562EIF4B
    SMNDC1ENSG00000119953.8676.08070936.57080-0.470203.983402.95430K562FIP1L1
    SMNDC1ENSG00000119953.81215.30530827.974700.553602.925802.19590K562G3BP2
    SMNDC1ENSG00000119953.8692.36500892.66100-0.366602.669301.88810K562GPKOW
    SMNDC1ENSG00000119953.8514.90250756.26720-0.554604.945404.16960K562HNRNPC
    SMNDC1ENSG00000119953.8477.91750675.34930-0.498903.946602.55650K562HNRNPF
    SMNDC1ENSG00000119953.81435.45070975.476900.557205.395403.61950K562HNRNPK
    SMNDC1ENSG00000119953.81744.869201035.450500.752806.125104.78910K562KIF1C
    SMNDC1ENSG00000119953.81772.017401159.969000.611207.719606.04960K562MBNL1
    SMNDC1ENSG00000119953.8636.89580871.32970-0.452203.658302.64260K562METAP2
    SMNDC1ENSG00000119953.8820.61990969.29700-0.240202.129001.41410K562MTPAP
    SMNDC1ENSG00000119953.81645.61230813.056101.017104.447203.24750K562NAA15
    SMNDC1ENSG00000119953.81341.47690913.249100.554603.129402.08850K562PCBP2
    SMNDC1ENSG00000119953.8682.25700882.50030-0.371302.209501.46700K562PCBP3
    SMNDC1ENSG00000119953.8512.29860676.90440-0.402002.946902.11880K562POLR2G
    SMNDC1ENSG00000119953.81161.58410603.055500.9456013.1644011.52030K562PRPF8
    SMNDC1ENSG00000119953.81414.907001721.40810-0.282903.154302.13170K562PUM2
    SMNDC1ENSG00000119953.82788.83750967.593501.5271042.4414040.25580K562PUS1
    SMNDC1ENSG00000119953.81888.24650942.809101.0019027.0080025.06520K562RBM15
    SMNDC1ENSG00000119953.81997.731201180.898200.758403.349101.62130K562RBM39
    SMNDC1ENSG00000119953.8625.01270916.17610-0.551704.257202.98600K562RPS3
    SMNDC1ENSG00000119953.81854.635401008.071100.879403.452402.02440K562SNRNP200
    SMNDC1ENSG00000119953.8446.17490586.46940-0.394402.340501.41560K562SRFBP1
    SMNDC1ENSG00000119953.8757.61990977.36480-0.367401.903301.30420K562SRSF1
    SMNDC1ENSG00000119953.8700.67560954.26190-0.445602.451201.68580K562TIA1
    SMNDC1ENSG00000119953.8339.03200652.19280-0.943909.409407.60310K562TIAL1
    SMNDC1ENSG00000119953.8535.75400692.87310-0.371002.240501.40200K562TRIM56
    SMNDC1ENSG00000119953.81331.10410802.167900.730506.956205.06340K562U2AF1
    SMNDC1ENSG00000119953.81228.02880828.598500.567507.441206.12740K562U2AF2
    SMNDC1ENSG00000119953.8896.777301141.98620-0.348704.148603.28660K562UPF1
    SMNDC1ENSG00000119953.8759.795301074.70100-0.500303.555802.18810K562UTP3
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    305 alternative splicing events after Knockdown/Knockout SMNDC1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 305 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEC1orf86ENSG00000162585.12chr1-2125436212557221250772125349212944521313460.090000.000150.07028includedK562SMNDC1
    SEWACENSG00000095787.17chr10+2890018328900410288996272889975028900702289008510.061000.000000.00001includedK562SMNDC1
    SEKIF23ENSG00000137807.9chr15+6973310669733418697326466973282669737128697373800.307000.000000.00012includedK562SMNDC1
    SEALDOAENSG00000149925.12chr16+3007719630077248300757443007582630078554300786870.100000.000100.05397includedK562SMNDC1
    SEPSMD6ENSG00000163636.6chr3-6400831864008477640079936400819964008950640091480.135000.000010.00694includedK562SMNDC1
    SESCMH1ENSG00000010803.12chr1-4162845041628651416270354162710441651792416519220.186000.000070.04223includedK562SMNDC1
    SEMRPL55ENSG00000162910.14chr1-2282956772282957852282953682282955702282959352282960190.064000.000240.09443includedK562SMNDC1
    SEANKHD1ENSG00000131503.16chr5+1398761041398768631398665421398666451398844051398845510.151000.000040.02811includedK562SMNDC1
    SENSFL1CENSG00000088833.13chr20-1426639142679414263101426475143313714332750.069000.000090.05283includedK562SMNDC1
    SESLC7A6ENSG00000103064.9chr16+6830772068307807683004956830062468308593683091520.221000.000140.07024includedK562SMNDC1
    SEFAM204AENSG00000165669.9chr10-1201012381201014391200957441200959351201017811201018320.263000.000160.07085includedK562SMNDC1
    SEITGB3BPENSG00000142856.12chr1-6397573563975852639741986397424163988799639888650.234000.000140.07024includedK562SMNDC1
    SEHNRNPDLENSG00000152795.13chr4-8334671583346947833457818334603683347189833472820.052000.000000.00086includedK562SMNDC1
    SEMAP3K4ENSG00000085511.15chr6+1615299821615300731615297741615298911615307861615309460.113000.000010.00900includedK562SMNDC1
    SEZNF385AENSG00000161642.13chr12-5477864254778741547782115477834854785018547850650.060000.000160.07053includedK562SMNDC1
    SEINTS12ENSG00000138785.10chr4-1066248041066249661066210061066211711066297941066298380.360000.000040.02773includedK562SMNDC1
    SENCAPG2ENSG00000146918.15chr7-1584449841584451721584391511584392551584472861584473860.081000.000210.08614includedK562SMNDC1
    SEEFHD2ENSG00000142634.8chr1+1575364515753780157523661575251415755088157568390.155000.000090.05283includedK562SMNDC1
    SERFC5ENSG00000111445.9chr12+1184554941184556201184545051184546971184568761184569410.072000.000000.00480includedK562SMNDC1
    SEMETTL1ENSG00000037897.12chr12-5816526258165388581648765816504058165756581658990.164000.000000.00431includedK562SMNDC1
    SEXPO1ENSG00000082898.12chr2-6176169261761813617609066176103861764696617647750.082000.000000.00543includedK562SMNDC1
    SEEIF3MENSG00000149100.8chr11+3261055732610681326053843260547532611092326111970.078000.000060.04032includedK562SMNDC1
    SEMSMO1ENSG00000052802.8chr4+1662544911662547771662488721662489161662589401662590890.124000.000000.00139includedK562SMNDC1
    SERPL17ENSG00000265681.2chr18-4701810547018203470178864701795447018644470187690.202000.000000.00047includedK562SMNDC1
    SENADKENSG00000008130.11chr1-1688177168832116879411688047168861916886670.079000.000210.08528includedK562SMNDC1
    SECOG7ENSG00000168434.8chr16-2340328223403555234000962340040723403700234038440.175000.000080.04699includedK562SMNDC1
    SEATOX1ENSG00000177556.7chr5-1511312641511313401511258391511260101511381061511383400.085000.000230.09190includedK562SMNDC1
    SERABGGTAENSG00000100949.10chr14-2473847524738607247382852473836924738696247389000.118000.000040.02811includedK562SMNDC1
    SETCEB1ENSG00000154582.12chr8-7487672174876860748719997487205374884311748844870.197000.000000.00543includedK562SMNDC1
    SESETD5ENSG00000168137.11chr3+9475728947586594755289475634947596094761690.149000.000160.07291includedK562SMNDC1
    SEWDR45ENSG00000196998.11chrX-4893530148935406489343034893440948935495489355700.273000.000040.02811includedK562SMNDC1
    SEAC079466.1ENSG00000266976.1chr19+291011662910123829097594290980112910334529106136-0.136000.000000.00227excludedK562SMNDC1
    SEPRKAB1ENSG00000111725.6chr12+120109299120109473120105954120106208120110105120110232-0.068000.000180.07753excludedK562SMNDC1
    SEECDENSG00000122882.6chr10-749234907492370874920191749203097492762374927829-0.252000.000000.00056excludedK562SMNDC1
    SENUPL1ENSG00000139496.11chr13+258833842588342025881943258820862588702025887170-0.161000.000010.00900excludedK562SMNDC1
    SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.114000.000130.06768excludedK562SMNDC1
    SEFKBP14ENSG00000106080.6chr7-300598283005992030058611300587393006228030062432-0.186000.000010.01107excludedK562SMNDC1
    SEUFC1ENSG00000143222.7chr1+161127910161128001161127406161127483161128201161128646-0.065000.000250.09592excludedK562SMNDC1
    SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.052000.000220.08687excludedK562SMNDC1
    SEUBE2J2ENSG00000160087.16chr1-119142411915051190284119086711923711192510-0.075000.000000.00212excludedK562SMNDC1
    SEPDCD10ENSG00000114209.10chr3-167443188167443261167437849167438061167452593167452651-0.170000.000010.01489excludedK562SMNDC1
    SERAB1AENSG00000138069.12chr2-653181166531821265313988653158246532510465325200-0.152000.000000.00001excludedK562SMNDC1
    SEWNK1ENSG00000060237.12chr12+989886990165987377987527990857990955-0.127000.000130.06688excludedK562SMNDC1
    SEPPARDENSG00000112033.9chr6+353148433531492735310390353104583537876335378994-0.213000.000080.04699excludedK562SMNDC1
    SEDCAF6ENSG00000143164.11chr1+168007608168007726167973770167974031168012262168012378-0.176000.000010.01489excludedK562SMNDC1
    SEMORF4L2ENSG00000123562.12chrX-102939608102939657102933426102933528102940098102940188-0.150000.000050.03499excludedK562SMNDC1
    SEGPR107ENSG00000148358.15chr9+132872648132872705132869797132869818132887193132887243-0.272000.000200.08381excludedK562SMNDC1
    SETUFT1ENSG00000143367.11chr1+151534566151534641151512809151512902151535060151535162-0.542000.000200.08473excludedK562SMNDC1
    SEHNRNPDENSG00000138668.14chr4-832926808329273783280623832807928329459883295109-0.115000.000150.07053excludedK562SMNDC1
    SEMECP2ENSG00000169057.15chrX-153357641153357765153297657153298008153363060153363120-0.182000.000260.09985excludedK562SMNDC1
    SECD151ENSG00000177697.13chr11+834529834591832985833026836062836153-0.103000.000110.05800excludedK562SMNDC1
    SESLMO2ENSG00000101166.11chr20-576122455761233557611744576118155761352057613689-0.118000.000000.00114excludedK562SMNDC1
    SERBMXENSG00000147274.10chrX-135955404135955563135954426135954504135957244135957327-0.148000.000050.03562excludedK562SMNDC1
    SEHNRNPCENSG00000092199.13chr14-217314692173149521702111217023882173745621737562-0.074000.000060.04132excludedK562SMNDC1
    SENOP56ENSG00000101361.10chr20+263678326368602636579263668026370462637165-0.203000.000000.00002excludedK562SMNDC1
    SEARHGAP17ENSG00000140750.12chr16-249506842495091824946790249469602495330724953464-0.229000.000170.07291excludedK562SMNDC1
    SEINSIG1ENSG00000186480.8chr7+155095534155095605155094456155094556155099950155100670-0.077000.000050.03562excludedK562SMNDC1
    SEERVK3-1ENSG00000142396.6chr19+588235315882382858817453588175825882611358827023-0.111000.000130.06732excludedK562SMNDC1
    SEDDX42ENSG00000198231.8chr17+618524676185253861851222618517366186439361864630-0.116000.000030.02498excludedK562SMNDC1
    SEKMT2EENSG00000005483.15chr7+104678572104678646104654653104654982104681285104681470-0.287000.000000.00359excludedK562SMNDC1
    SETHAP9-AS1ENSG00000251022.2chr4-838191418381921583814161838160008382122983821376-0.255000.000040.02811excludedK562SMNDC1
    SERP11-302M6.4ENSG00000271949.1chr1+903953669039543790309196903093419039862590398809-0.199000.000100.05397excludedK562SMNDC1
    SEXPO1ENSG00000082898.12chr2-617293836172944561726899617270296174974561749818-0.062000.000020.02207excludedK562SMNDC1
    SEPPP2R5CENSG00000078304.15chr14+102276249102276373102252354102252520102298037102298141-0.291000.000060.04032excludedK562SMNDC1
    SEKSR1ENSG00000141068.9chr17+259283852592842725924293259244622593085925930914-0.277000.000030.02603excludedK562SMNDC1
    SEFLNAENSG00000196924.10chrX-153585618153585642153583192153583440153585801153585991-0.130000.000080.04699excludedK562SMNDC1
    SEEIF4A2ENSG00000156976.10chr3+186506098186506209186505591186505671186506913186507080-0.061000.000030.02603excludedK562SMNDC1
    SEZMYND8ENSG00000101040.15chr20-458412864584137045839405458395424584890845848975-0.258000.000000.00139excludedK562SMNDC1
    SESLC7A11ENSG00000151012.9chr4-139106274139106398139104355139104459139135738139135783-0.369000.000000.00133excludedK562SMNDC1
    SEPCGF3ENSG00000185619.13chr4+726188726287724758724899727460727578-0.299000.000020.02207excludedK562SMNDC1
    SEOSBPL3ENSG00000070882.8chr7-248886872488879524881897248820322489212224892253-0.301000.000010.00780excludedK562SMNDC1
    SEPNISRENSG00000132424.10chr6-998517049985175899850415998505869985247899852578-0.160000.000100.05452excludedK562SMNDC1
    SEKDM4CENSG00000107077.13chr9+710540171055007103684710387071280657128236-0.138000.000250.09589excludedK562SMNDC1
    SEHMGCS1ENSG00000112972.10chr5-433078674330792643298619432990774331345743313595-0.155000.000030.02757excludedK562SMNDC1
    SEMAP4K4ENSG00000071054.11chr2+102480282102480513102476104102476326102481391102481498-0.152000.000130.06688excludedK562SMNDC1
    SEMETTL5ENSG00000138382.9chr2-170671986170672038170668966170669016170676070170676153-0.103000.000000.00005excludedK562SMNDC1
    SEIDI1ENSG00000067064.6chr10-108993810901111089240108933310948031095110-0.151000.000000.00099excludedK562SMNDC1
    SECALUENSG00000128595.12chr7+128388626128388858128379345128379486128398924128399091-0.205000.000000.00001excludedK562SMNDC1
    SEPFKFB4ENSG00000114268.7chr3-485766864857674348575930485760524857712948577204-0.148000.000010.01195excludedK562SMNDC1
    SESETD5ENSG00000168137.11chr3+949457194946359490071949031494954229495552-0.058000.000030.02689excludedK562SMNDC1
    SEEXOSC10ENSG00000171824.9chr1-111427441114293511141138111412951114750411147648-0.112000.000040.02773excludedK562SMNDC1
    SEPREPLENSG00000138078.11chr2-445489654454903944544749445485844454986944549993-0.060000.000240.09568excludedK562SMNDC1
    SEPOM121ENSG00000196313.7chr7+723843017238436572361471723616497239679972397015-0.137000.000130.06688excludedK562SMNDC1
    SEEEF1DENSG00000104529.13chr8-144668388144668460144663398144663498144668898144669022-0.101000.000090.05175excludedK562SMNDC1
    SECDC16ENSG00000130177.10chr13+115027361115027423115024809115024873115028353115028489-0.195000.000000.00139excludedK562SMNDC1
    SERBM5ENSG00000003756.12chr3+501416805014174150140515501405995014250950142575-0.345000.000110.05800excludedK562SMNDC1
    SEVPS26AENSG00000122958.10chr10+709155677091564370892653708928037091676270916919-0.102000.000260.09985excludedK562SMNDC1
    SEUBBENSG00000170315.9chr17+162852151628529616284603162847761628540716285444-0.309000.000000.00000excludedK562SMNDC1
    SEZFAS1ENSG00000177410.8chr20+4789702147897107478956404789574547905581479057970.120000.000000.00138includedHepG2SMNDC1
    SEMYL6ENSG00000092841.14chr12+5655440956554454565540265655410456555170565553710.225000.000000.00000includedHepG2SMNDC1
    SEALDOAENSG00000149925.12chr16+3007714530077248300757543007582630078554300786870.151000.000000.00017includedHepG2SMNDC1
    SEAPOC1ENSG00000130208.5chr19+4541792845417990454175034541774645418128454182060.113000.000000.00000includedHepG2SMNDC1
    SEEIF5AENSG00000132507.13chr17+7210910721107172103177210434721293372131190.105000.000000.00401includedHepG2SMNDC1
    SEBAG6ENSG00000204463.8chr6-3160727631607423316068043160700331607975316080830.171000.000000.00077includedHepG2SMNDC1
    SEAP1G2ENSG00000213983.7chr14-2403240824032511240317122403180224032588240328470.187000.000000.00108includedHepG2SMNDC1
    SETMEM39AENSG00000176142.8chr3-1191564341191564961191556371191558251191566011191569500.099000.000090.05063includedHepG2SMNDC1
    SEPAHENSG00000171759.4chr12-1032374061032375571032341771032342931032381131032382090.110000.000130.06192includedHepG2SMNDC1
    SEFDPSENSG00000160752.10chr1+1552795791552797561552786421552787561552798331552799960.099000.000000.00084includedHepG2SMNDC1
    SEODAMENSG00000109205.12chr4+7106717071067218710662137106631871067974710680460.116000.000020.01664includedHepG2SMNDC1
    SEASLENSG00000126522.12chr7+6555173065551812655515716555164965552320655525470.360000.000160.07781includedHepG2SMNDC1





    1 RBPs can affect the splicing of SMNDC1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    A3SSSMNDC1ENSG00000119953.8chr10-1120573271120575511120573271120574861120584051120586430.131000.000000.00000longerK562AQR
    A3SSSMNDC1ENSG00000119953.8chr10-1120549871120552271120549871120551391120573241120575030.058000.000000.00000longerK562AQR
    A3SSSMNDC1ENSG00000119953.8chr10-1120584051120586431120584051120585481120632251120633450.185000.000000.00000longerK562AQR
    A3SSSMNDC1ENSG00000119953.8chr10-112057324112057551112057324112057503112058405112058643-0.390000.004230.02493shorterK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein SMNDC1 and its RNA.