ENCORE eCLIP:445

SMNDC1 eCLIP in K562

Experiment Information (Status: Released)

	445	445-control
Exp_UID	445	445
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR658IQB	ENCSR631CJA
ENCODE_alias	gene-yeo:445	gene-yeo:445-control
RBP	SMNDC1	SMNDC1
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB616ASE	ENCAB616ASE
Antibody	RN078PW	RN078PW
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	179	205

Replicate Information


Rep_UID	445_01	445_02	445_INPUT
Exp UID	445	445	445
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB039AEI	ENCLB877GLA	ENCLB194PVV
ENCODE_alias	gene-yeo:445_01	gene-yeo:445_02	gene-yeo:445_INPUT
Biosample Name	K562_061215	K562_051215	K562_061215
Biosample_ENCODE_Accession	ENCBS318IMK	ENCBS489LOC	ENCBS318IMK
Biosample_ENCODE_Alias	gene-yeo:K562_061215	gene-yeo:K562_051215	gene-yeo:K562_061215
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-06-12	2015-05-12	2015-06-12
Culture_End_Date	2015-06-30	2015-06-11	2015-06-30
Passage	4	4	4

QC Stats

Experiment QC

	445	445-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	445_01	445_02	445_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	445_01	445_02	445_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	506	506	505
i7_barcode	706	706	705

Sequencing Information


Rep_UID	445_01	445_02	445_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/445.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	445	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
445.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	445	final_peaks	peaks	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=445)