SMNDC1-BG293LV05-99_S173_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set69/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2941 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV05-1_merged_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV05-2_S134_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 28524 |
SMNDC1-BG293LV05-99_S173_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set69/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2941 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV05-1_merged_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV05-2_S134_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 28568 |
SMNDC1-BG293LV05-99_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 2941 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-99_S173_L002_R1_001.filtered.trimmed.paired.fastq.gz,SMNDC1-BG293LV05-99_S173_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 28612 |
SMNDC1-BG293LV05-99_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2941 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-99/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28656 |
SMNDC1-BG293LV05-99_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2941 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-99/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28700 |
SMNDC1-BG293LV05-99_Signal.Unique.strand-.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2941 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-99/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28744 |
SMNDC1-BG293LV05-99_Signal.Unique.strand+.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2941 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-99/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28788 |
SMNDC1-BG293LV05-99_quant.sf | ENCODE_DATA/set69/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 2941 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-99_S173_L002_R1_001.filtered.trimmed.paired.fastq.gz,SMNDC1-BG293LV05-99_S173_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 28832 |
SMNDC1-BG293LV05-100_S174_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set69/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2942 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BG293LV05-1_merged_R1_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV05-2_S134_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 28523 |
SMNDC1-BG293LV05-100_S174_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set69/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2942 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BG293LV05-1_merged_R2_001.filtered.trimmed.paired.fastq.gz,NT-BG293LV05-2_S134_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCORE2 | | 28567 |
SMNDC1-BG293LV05-100_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 2942 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-100_S174_L002_R1_001.filtered.trimmed.paired.fastq.gz,SMNDC1-BG293LV05-100_S174_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 28611 |
SMNDC1-BG293LV05-100_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2942 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-100/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28655 |
SMNDC1-BG293LV05-100_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2942 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-100/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28699 |
SMNDC1-BG293LV05-100_Signal.Unique.strand-.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2942 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-100/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28743 |
SMNDC1-BG293LV05-100_Signal.Unique.strand+.bw | ENCODE_DATA/set69/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2942 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-100/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 28787 |
SMNDC1-BG293LV05-100_quant.sf | ENCODE_DATA/set69/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 2942 | | | | | GRCh38 | V40 | SMNDC1-BG293LV05-100_S174_L002_R1_001.filtered.trimmed.paired.fastq.gz,SMNDC1-BG293LV05-100_S174_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 28831 |