CPSF6      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-5BG293LV06-6
idx00
TRCN#_or_BGC#TRCN0000000154TRCN0000000154
shRNA_or_gRNA_sequenceACCATAGTAGATCACGAGAAAACCATAGTAGATCACGAGAAA
PAM
NameCPSF6CPSF6
Sample_IDBG293LV06-5BG293LV06-6
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameCPSF6CPSF6
qPCR_result88.886.0
Ave_qPCR87.4
RT-qPCR_primer-FTCTTTGCAAGATTGCCTTCA
RT-qPCR_primer-RTCGTGATCTACTATGGTCCCTC
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1009210093




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-5BG293LV06-6
Sample_IDBG293LV06-5BG293LV06-6
Sample Name
Sample NameCPSF6-BG293LV06-5CPSF6-BG293LV06-6
RBPCPSF6CPSF6
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1344213443




Library-Prep Information
BG293LV06-5BG293LV06-6
Sample #910
Sample NameCPSF6-BG293LV06-5CPSF6-BG293LV06-6
Sample_Name_Alias
Index Well PositionA02B02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp296290
Peak_Molarity58.0083.50
libSampleQC_DNA_WellDNA_Library_set71/set1/A2.pngDNA_Library_set71/set1/B2.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set71/set1/A2.pngRNA_Library_set71/set1/B2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-5BG293LV06-6
RBPCPSF6CPSF6
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44344435




Sequencing Information
BG293LV06-5BG293LV06-6
Sample_IDBG293LV06-5BG293LV06-6
Sample NameCPSF6-BG293LV06-5CPSF6-BG293LV06-6
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads37,866,99634,401,638
total_aligned_reads34,501,82232,003,059
unique_aligned_reads31,955,13429,934,159
percent_uniqueAligned0.843880.87014
correlation_replicates0.9715690.971569
spikein_reads140,652115,550
percent_spikeins0.003710.00336
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30033004




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database