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CPSF6
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-5
BG293LV06-6
idx
0
0
TRCN#_or_BGC#
TRCN0000000154
TRCN0000000154
shRNA_or_gRNA_sequence
ACCATAGTAGATCACGAGAAA
ACCATAGTAGATCACGAGAAA
PAM
Name
CPSF6
CPSF6
Sample_ID
BG293LV06-5
BG293LV06-6
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
CPSF6
CPSF6
qPCR_result
88.8
86.0
Ave_qPCR
87.4
RT-qPCR_primer-F
TCTTTGCAAGATTGCCTTCA
RT-qPCR_primer-R
TCGTGATCTACTATGGTCCCTC
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10092
10093
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-5
BG293LV06-6
Sample_ID
BG293LV06-5
BG293LV06-6
Sample Name
Sample Name
CPSF6-BG293LV06-5
CPSF6-BG293LV06-6
RBP
CPSF6
CPSF6
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13442
13443
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-5
BG293LV06-6
Sample #
9
10
Sample Name
CPSF6-BG293LV06-5
CPSF6-BG293LV06-6
Sample_Name_Alias
Index Well Position
A02
B02
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
296
290
Peak_Molarity
58.00
83.50
libSampleQC_DNA_Well
DNA_Library_set71/set1/A2.png
DNA_Library_set71/set1/B2.png
RIN
10.0
9.9
libSample_RNA_Well
RNA_Library_set71/set1/A2.png
RNA_Library_set71/set1/B2.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-5
BG293LV06-6
RBP
CPSF6
CPSF6
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4434
4435
Sequencing Information
BG293LV06-5
BG293LV06-6
Sample_ID
BG293LV06-5
BG293LV06-6
Sample Name
CPSF6-BG293LV06-5
CPSF6-BG293LV06-6
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
37,866,996
34,401,638
total_aligned_reads
34,501,822
32,003,059
unique_aligned_reads
31,955,134
29,934,159
percent_uniqueAligned
0.84388
0.87014
correlation_replicates
0.971569
0.971569
spikein_reads
140,652
115,550
percent_spikeins
0.00371
0.00336
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3003
3004
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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