RPS19BP1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-87BG293LV06-88
idx00
TRCN#_or_BGC#TRCN0000172981TRCN0000172981
shRNA_or_gRNA_sequenceCCGGGCCAAGACCAAGAAGAAGAAGCTCGAGCTTCTTCTTCTTGGTCTTGGCTTTTTTGCCGGGCCAAGACCAAGAAGAAGAAGCTCGAGCTTCTTCTTCTTGGTCTTGGCTTTTTTG
PAM
NameRPS19BP1RPS19BP1
Sample_IDBG293LV06-87BG293LV06-88
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRPS19BP1RPS19BP1
qPCR_result95.095.2
Ave_qPCR95.1
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1017410175




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-87BG293LV06-88
Sample_IDBG293LV06-87BG293LV06-88
Sample Name
Sample NameRPS19BP1-BG293LV06-87BRPS19BP1-BG293LV06-88B
RBPRPS19BP1RPS19BP1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1352413525




Library-Prep Information
BG293LV06-87BG293LV06-88
Sample #8788
Sample NameRPS19BP1-BG293LV06-87BRPS19BP1-BG293LV06-88B
Sample_Name_Alias
Index Well PositionG04H04
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp272273
Peak_Molarity87.7065.10
libSampleQC_DNA_WellDNA_Library_set72/set1/G4.pngDNA_Library_set72/set1/H4.png
RIN9.89.7
libSample_RNA_WellRNA_Library_set72/set1/G4.pngRNA_Library_set72/set1/H4.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-87BG293LV06-88
RBPRPS19BP1RPS19BP1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45124513




Sequencing Information
BG293LV06-87BG293LV06-88
Sample_IDBG293LV06-87BG293LV06-88
Sample NameRPS19BP1-BG293LV06-87BRPS19BP1-BG293LV06-88B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads25,781,61937,366,336
total_aligned_reads24,131,39633,860,996
unique_aligned_reads22,498,90731,742,437
percent_uniqueAligned0.872670.84949
correlation_replicates0.9929550.992955
spikein_reads79,68285,786
percent_spikeins0.003090.00230
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30813082




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database