ZC3HAV1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-35BG293LV06-36
idx00
TRCN#_or_BGC#TRCN0000004516TRCN0000004516
shRNA_or_gRNA_sequenceCCGGCCGTGCCTATGTGGAATCTATCTCGAGATAGATTCCACATAGGCACGGTTTTTCCGGCCGTGCCTATGTGGAATCTATCTCGAGATAGATTCCACATAGGCACGGTTTTT
PAM
NameZC3HAV1ZC3HAV1
Sample_IDBG293LV06-35BG293LV06-36
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameZC3HAV1ZC3HAV1
qPCR_result92.087.4
Ave_qPCR89.7
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1012210123




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-35BG293LV06-36
Sample_IDBG293LV06-35BG293LV06-36
Sample Name
Sample NameZC3HAV1-BG293LV06-35ZC3HAV1-BG293LV06-36
RBPZC3HAV1ZC3HAV1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1347213473




Library-Prep Information
BG293LV06-35BG293LV06-36
Sample #3940
Sample NameZC3HAV1-BG293LV06-35ZC3HAV1-BG293LV06-36
Sample_Name_Alias
Index Well PositionG05H05
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp270281
Peak_Molarity100.0075.70
libSampleQC_DNA_WellDNA_Library_set71/set1/G5.pngDNA_Library_set71/set1/H5.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set71/set1/G5.pngRNA_Library_set71/set1/H5.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-35BG293LV06-36
RBPZC3HAV1ZC3HAV1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44644465




Sequencing Information
BG293LV06-35BG293LV06-36
Sample_IDBG293LV06-35BG293LV06-36
Sample NameZC3HAV1-BG293LV06-35ZC3HAV1-BG293LV06-36
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads37,457,52239,610,518
total_aligned_reads34,012,24436,553,703
unique_aligned_reads31,645,43933,998,981
percent_uniqueAligned0.844840.85833
correlation_replicates0.9703950.970395
spikein_reads93,298147,770
percent_spikeins0.002490.00373
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30333034




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database