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ZC3HAV1
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-35
BG293LV06-36
idx
0
0
TRCN#_or_BGC#
TRCN0000004516
TRCN0000004516
shRNA_or_gRNA_sequence
CCGGCCGTGCCTATGTGGAATCTATCTCGAGATAGATTCCACATAGGCACGGTTTTT
CCGGCCGTGCCTATGTGGAATCTATCTCGAGATAGATTCCACATAGGCACGGTTTTT
PAM
Name
ZC3HAV1
ZC3HAV1
Sample_ID
BG293LV06-35
BG293LV06-36
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
ZC3HAV1
ZC3HAV1
qPCR_result
92.0
87.4
Ave_qPCR
89.7
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10122
10123
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-35
BG293LV06-36
Sample_ID
BG293LV06-35
BG293LV06-36
Sample Name
Sample Name
ZC3HAV1-BG293LV06-35
ZC3HAV1-BG293LV06-36
RBP
ZC3HAV1
ZC3HAV1
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13472
13473
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-35
BG293LV06-36
Sample #
39
40
Sample Name
ZC3HAV1-BG293LV06-35
ZC3HAV1-BG293LV06-36
Sample_Name_Alias
Index Well Position
G05
H05
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-09-25
2024-09-25
Lib_ID
Lib-240925B
Lib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp
270
281
Peak_Molarity
100.00
75.70
libSampleQC_DNA_Well
DNA_Library_set71/set1/G5.png
DNA_Library_set71/set1/H5.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set71/set1/G5.png
RNA_Library_set71/set1/H5.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-09-30
2024-09-30
Sample_ID
BG293LV06-35
BG293LV06-36
RBP
ZC3HAV1
ZC3HAV1
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4464
4465
Sequencing Information
BG293LV06-35
BG293LV06-36
Sample_ID
BG293LV06-35
BG293LV06-36
Sample Name
ZC3HAV1-BG293LV06-35
ZC3HAV1-BG293LV06-36
Pool ID
Pool-240930
Pool-240930
LocalServer_folder
set71
set71
total_reads
37,457,522
39,610,518
total_aligned_reads
34,012,244
36,553,703
unique_aligned_reads
31,645,439
33,998,981
percent_uniqueAligned
0.84484
0.85833
correlation_replicates
0.970395
0.970395
spikein_reads
93,298
147,770
percent_spikeins
0.00249
0.00373
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3033
3034
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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