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TOB2
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-117
BG293LV06-118
idx
0
0
TRCN#_or_BGC#
TRCN0000004165
TRCN0000004165
shRNA_or_gRNA_sequence
CCGGGAGCTGAGTGTCTGGATTGATCTCGAGATCAATCCAGACACTCAGCTCTTTTT
CCGGGAGCTGAGTGTCTGGATTGATCTCGAGATCAATCCAGACACTCAGCTCTTTTT
PAM
Name
TOB2
TOB2
Sample_ID
BG293LV06-117
BG293LV06-118
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
TOB2
TOB2
qPCR_result
71.5
76.1
Ave_qPCR
73.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10204
10205
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-117
BG293LV06-118
Sample_ID
BG293LV06-117
BG293LV06-118
Sample Name
Sample Name
TOB2-BG293LV06-117B
TOB2-BG293LV06-118B
RBP
TOB2
TOB2
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13554
13555
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-117
BG293LV06-118
Sample #
117
118
Sample Name
TOB2-BG293LV06-117B
TOB2-BG293LV06-118B
Sample_Name_Alias
Index Well Position
E08
F08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
285
300
Peak_Molarity
82.00
96.10
libSampleQC_DNA_Well
DNA_Library_set72/set1/E8.png
DNA_Library_set72/set1/F8.png
RIN
9.9
9.8
libSample_RNA_Well
RNA_Library_set72/set1/E8.png
RNA_Library_set72/set1/F8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-117
BG293LV06-118
RBP
TOB2
TOB2
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4542
4543
Sequencing Information
BG293LV06-117
BG293LV06-118
Sample_ID
BG293LV06-117
BG293LV06-118
Sample Name
TOB2-BG293LV06-117B
TOB2-BG293LV06-118B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
37,565,439
34,614,760
total_aligned_reads
35,068,774
32,923,907
unique_aligned_reads
32,906,617
30,967,675
percent_uniqueAligned
0.87598
0.89464
correlation_replicates
0.996244
0.996244
spikein_reads
116,714
110,146
percent_spikeins
0.00311
0.00318
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3111
3112
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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