TOB2      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-117BG293LV06-118
idx00
TRCN#_or_BGC#TRCN0000004165TRCN0000004165
shRNA_or_gRNA_sequenceCCGGGAGCTGAGTGTCTGGATTGATCTCGAGATCAATCCAGACACTCAGCTCTTTTTCCGGGAGCTGAGTGTCTGGATTGATCTCGAGATCAATCCAGACACTCAGCTCTTTTT
PAM
NameTOB2TOB2
Sample_IDBG293LV06-117BG293LV06-118
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameTOB2TOB2
qPCR_result71.576.1
Ave_qPCR73.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1020410205




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-117BG293LV06-118
Sample_IDBG293LV06-117BG293LV06-118
Sample Name
Sample NameTOB2-BG293LV06-117BTOB2-BG293LV06-118B
RBPTOB2TOB2
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1355413555




Library-Prep Information
BG293LV06-117BG293LV06-118
Sample #117118
Sample NameTOB2-BG293LV06-117BTOB2-BG293LV06-118B
Sample_Name_Alias
Index Well PositionE08F08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp285300
Peak_Molarity82.0096.10
libSampleQC_DNA_WellDNA_Library_set72/set1/E8.pngDNA_Library_set72/set1/F8.png
RIN9.99.8
libSample_RNA_WellRNA_Library_set72/set1/E8.pngRNA_Library_set72/set1/F8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-117BG293LV06-118
RBPTOB2TOB2
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45424543




Sequencing Information
BG293LV06-117BG293LV06-118
Sample_IDBG293LV06-117BG293LV06-118
Sample NameTOB2-BG293LV06-117BTOB2-BG293LV06-118B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads37,565,43934,614,760
total_aligned_reads35,068,77432,923,907
unique_aligned_reads32,906,61730,967,675
percent_uniqueAligned0.875980.89464
correlation_replicates0.9962440.996244
spikein_reads116,714110,146
percent_spikeins0.003110.00318
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31113112




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database