SNRPA      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-109BG293LV06-110
idx00
TRCN#_or_BGC#TRCN0000006610TRCN0000006610
shRNA_or_gRNA_sequenceCCGGCCTCAATGAGAAGATCAAGAACTCGAGTTCTTGATCTTCTCATTGAGGTTTTTCCGGCCTCAATGAGAAGATCAAGAACTCGAGTTCTTGATCTTCTCATTGAGGTTTTT
PAM
NameSNRPASNRPA
Sample_IDBG293LV06-109BG293LV06-110
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameSNRPASNRPA
qPCR_result87.986.6
Ave_qPCR87.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1019610197




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-109BG293LV06-110
Sample_IDBG293LV06-109BG293LV06-110
Sample Name
Sample NameSNRPA-BG293LV06-109BSNRPA-BG293LV06-110B
RBPSNRPASNRPA
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1354613547




Library-Prep Information
BG293LV06-109BG293LV06-110
Sample #109110
Sample NameSNRPA-BG293LV06-109BSNRPA-BG293LV06-110B
Sample_Name_Alias
Index Well PositionE07F07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp279279
Peak_Molarity81.2084.90
libSampleQC_DNA_WellDNA_Library_set72/set1/E7.pngDNA_Library_set72/set1/F7.png
RIN10.09.8
libSample_RNA_WellRNA_Library_set72/set1/E7.pngRNA_Library_set72/set1/F7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-109BG293LV06-110
RBPSNRPASNRPA
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45344535




Sequencing Information
BG293LV06-109BG293LV06-110
Sample_IDBG293LV06-109BG293LV06-110
Sample NameSNRPA-BG293LV06-109BSNRPA-BG293LV06-110B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads30,861,65932,911,232
total_aligned_reads27,831,92130,467,591
unique_aligned_reads26,047,97428,547,598
percent_uniqueAligned0.844020.86741
correlation_replicates0.9963840.996384
spikein_reads95,868102,402
percent_spikeins0.003110.00311
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31033104




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database