MBNL2      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-13BG293LV06-14
idx00
TRCN#_or_BGC#TRCN0000180132TRCN0000180132
shRNA_or_gRNA_sequenceCCGGCGGCTATTAGCTTTGCTCCTTCTCGAGAAGGAGCAAAGCTAATAGCCGTTTTTTGCCGGCGGCTATTAGCTTTGCTCCTTCTCGAGAAGGAGCAAAGCTAATAGCCGTTTTTTG
PAM
NameMBNL2MBNL2
Sample_IDBG293LV06-13BG293LV06-14
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameMBNL2MBNL2
qPCR_result92.693.0
Ave_qPCR92.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1010010101




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-13BG293LV06-14
Sample_IDBG293LV06-13BG293LV06-14
Sample Name
Sample NameMBNL2-BG293LV06-13MBNL2-BG293LV06-14
RBPMBNL2MBNL2
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1345013451




Library-Prep Information
BG293LV06-13BG293LV06-14
Sample #1718
Sample NameMBNL2-BG293LV06-13MBNL2-BG293LV06-14
Sample_Name_Alias
Index Well PositionA03B03
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp287283
Peak_Molarity77.7078.80
libSampleQC_DNA_WellDNA_Library_set71/set1/A3.pngDNA_Library_set71/set1/B3.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set71/set1/A3.pngRNA_Library_set71/set1/B3.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-13BG293LV06-14
RBPMBNL2MBNL2
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44424443




Sequencing Information
BG293LV06-13BG293LV06-14
Sample_IDBG293LV06-13BG293LV06-14
Sample NameMBNL2-BG293LV06-13MBNL2-BG293LV06-14
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads29,456,08231,936,624
total_aligned_reads25,942,71728,842,684
unique_aligned_reads24,252,45526,968,022
percent_uniqueAligned0.823340.84442
correlation_replicates0.9971850.997185
spikein_reads99,95691,064
percent_spikeins0.003390.00285
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30113012




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database