MBNL1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-17BG293LV06-18
idx00
TRCN#_or_BGC#TRCN0000063963TRCN0000063963
shRNA_or_gRNA_sequenceCCGGGCAGTCTTTAACACTGGTATTCTCGAGAATACCAGTGTTAAAGACTGCTTTTTGCCGGGCAGTCTTTAACACTGGTATTCTCGAGAATACCAGTGTTAAAGACTGCTTTTTG
PAM
NameMBNL1MBNL1
Sample_IDBG293LV06-17BG293LV06-18
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameMBNL1MBNL1
qPCR_result31.047.5
Ave_qPCR39.3
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1010410105




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-17BG293LV06-18
Sample_IDBG293LV06-17BG293LV06-18
Sample Name
Sample NameMBNL1-BG293LV06-17MBNL1-BG293LV06-18
RBPMBNL1MBNL1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1345413455




Library-Prep Information
BG293LV06-17BG293LV06-18
Sample #2122
Sample NameMBNL1-BG293LV06-17MBNL1-BG293LV06-18
Sample_Name_Alias
Index Well PositionE03F03
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp283272
Peak_Molarity91.20105.00
libSampleQC_DNA_WellDNA_Library_set71/set1/E3.pngDNA_Library_set71/set1/F3.png
RIN10.09.9
libSample_RNA_WellRNA_Library_set71/set1/E3.pngRNA_Library_set71/set1/F3.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-17BG293LV06-18
RBPMBNL1MBNL1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44464447




Sequencing Information
BG293LV06-17BG293LV06-18
Sample_IDBG293LV06-17BG293LV06-18
Sample NameMBNL1-BG293LV06-17MBNL1-BG293LV06-18
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads43,011,91730,304,534
total_aligned_reads38,705,55227,220,881
unique_aligned_reads36,255,56425,497,786
percent_uniqueAligned0.842920.84139
correlation_replicates0.9974580.997458
spikein_reads86,30466,002
percent_spikeins0.002010.00218
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30153016




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database