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LSM10
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-65
BG293LV06-66
idx
0
0
TRCN#_or_BGC#
TRCN0000074415
TRCN0000074415
shRNA_or_gRNA_sequence
CCGGCATAGACAATGTCGATGCTTTCTCGAGAAAGCATCGACATTGTCTATGTTTTTG
CCGGCATAGACAATGTCGATGCTTTCTCGAGAAAGCATCGACATTGTCTATGTTTTTG
PAM
Name
LSM10
LSM10
Sample_ID
BG293LV06-65
BG293LV06-66
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
LSM10
LSM10
qPCR_result
83.4
85.8
Ave_qPCR
84.6
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10152
10153
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-65
BG293LV06-66
Sample_ID
BG293LV06-65
BG293LV06-66
Sample Name
Sample Name
LSM10-BG293LV06-65B
LSM10-BG293LV06-66B
RBP
LSM10
LSM10
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13502
13503
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-65
BG293LV06-66
Sample #
67
68
Sample Name
LSM10-BG293LV06-65B
LSM10-BG293LV06-66B
Sample_Name_Alias
Index Well Position
C02
D02
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
279
278
Peak_Molarity
80.40
91.40
libSampleQC_DNA_Well
DNA_Library_set72/set1/C2.png
DNA_Library_set72/set1/D2.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set72/set1/C2.png
RNA_Library_set72/set1/D2.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-65
BG293LV06-66
RBP
LSM10
LSM10
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4492
4493
Sequencing Information
BG293LV06-65
BG293LV06-66
Sample_ID
BG293LV06-65
BG293LV06-66
Sample Name
LSM10-BG293LV06-65B
LSM10-BG293LV06-66B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
26,883,856
22,178,840
total_aligned_reads
23,781,674
19,511,958
unique_aligned_reads
22,208,674
18,181,572
percent_uniqueAligned
0.82610
0.81977
correlation_replicates
0.995014
0.995014
spikein_reads
91,526
37,328
percent_spikeins
0.00340
0.00168
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3061
3062
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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