LSM10      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-65BG293LV06-66
idx00
TRCN#_or_BGC#TRCN0000074415TRCN0000074415
shRNA_or_gRNA_sequenceCCGGCATAGACAATGTCGATGCTTTCTCGAGAAAGCATCGACATTGTCTATGTTTTTGCCGGCATAGACAATGTCGATGCTTTCTCGAGAAAGCATCGACATTGTCTATGTTTTTG
PAM
NameLSM10LSM10
Sample_IDBG293LV06-65BG293LV06-66
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameLSM10LSM10
qPCR_result83.485.8
Ave_qPCR84.6
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1015210153




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-65BG293LV06-66
Sample_IDBG293LV06-65BG293LV06-66
Sample Name
Sample NameLSM10-BG293LV06-65BLSM10-BG293LV06-66B
RBPLSM10LSM10
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1350213503




Library-Prep Information
BG293LV06-65BG293LV06-66
Sample #6768
Sample NameLSM10-BG293LV06-65BLSM10-BG293LV06-66B
Sample_Name_Alias
Index Well PositionC02D02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp279278
Peak_Molarity80.4091.40
libSampleQC_DNA_WellDNA_Library_set72/set1/C2.pngDNA_Library_set72/set1/D2.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set72/set1/C2.pngRNA_Library_set72/set1/D2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-65BG293LV06-66
RBPLSM10LSM10
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44924493




Sequencing Information
BG293LV06-65BG293LV06-66
Sample_IDBG293LV06-65BG293LV06-66
Sample NameLSM10-BG293LV06-65BLSM10-BG293LV06-66B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads26,883,85622,178,840
total_aligned_reads23,781,67419,511,958
unique_aligned_reads22,208,67418,181,572
percent_uniqueAligned0.826100.81977
correlation_replicates0.9950140.995014
spikein_reads91,52637,328
percent_spikeins0.003400.00168
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30613062




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database