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YWHAG
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-75
BG293LV06-76
idx
0
0
TRCN#_or_BGC#
TRCN0000078159
TRCN0000078159
shRNA_or_gRNA_sequence
CCGGCCTGCTGGATAACTACCTGATCTCGAGATCAGGTAGTTATCCAGCAGGTTTTTG
CCGGCCTGCTGGATAACTACCTGATCTCGAGATCAGGTAGTTATCCAGCAGGTTTTTG
PAM
Name
YWHAG
YWHAG
Sample_ID
BG293LV06-75
BG293LV06-76
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
YWHAG
YWHAG
qPCR_result
74.2
63.5
Ave_qPCR
68.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10162
10163
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-75
BG293LV06-76
Sample_ID
BG293LV06-75
BG293LV06-76
Sample Name
Sample Name
YWHAG-BG293LV06-75B
YWHAG-BG293LV06-76B
RBP
YWHAG
YWHAG
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13512
13513
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-75
BG293LV06-76
Sample #
75
76
Sample Name
YWHAG-BG293LV06-75B
YWHAG-BG293LV06-76B
Sample_Name_Alias
Index Well Position
C03
D03
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
280
281
Peak_Molarity
102.00
78.90
libSampleQC_DNA_Well
DNA_Library_set72/set1/C3.png
DNA_Library_set72/set1/D3.png
RIN
9.9
10.0
libSample_RNA_Well
RNA_Library_set72/set1/C3.png
RNA_Library_set72/set1/D3.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-75
BG293LV06-76
RBP
YWHAG
YWHAG
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4500
4501
Sequencing Information
BG293LV06-75
BG293LV06-76
Sample_ID
BG293LV06-75
BG293LV06-76
Sample Name
YWHAG-BG293LV06-75B
YWHAG-BG293LV06-76B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
59,077,729
40,885,491
total_aligned_reads
53,548,059
36,527,787
unique_aligned_reads
50,063,104
34,221,358
percent_uniqueAligned
0.84741
0.83700
correlation_replicates
0.996263
0.996263
spikein_reads
229,942
95,656
percent_spikeins
0.00389
0.00234
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3069
3070
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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