YWHAG      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-75BG293LV06-76
idx00
TRCN#_or_BGC#TRCN0000078159TRCN0000078159
shRNA_or_gRNA_sequenceCCGGCCTGCTGGATAACTACCTGATCTCGAGATCAGGTAGTTATCCAGCAGGTTTTTGCCGGCCTGCTGGATAACTACCTGATCTCGAGATCAGGTAGTTATCCAGCAGGTTTTTG
PAM
NameYWHAGYWHAG
Sample_IDBG293LV06-75BG293LV06-76
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameYWHAGYWHAG
qPCR_result74.263.5
Ave_qPCR68.8
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1016210163




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-75BG293LV06-76
Sample_IDBG293LV06-75BG293LV06-76
Sample Name
Sample NameYWHAG-BG293LV06-75BYWHAG-BG293LV06-76B
RBPYWHAGYWHAG
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1351213513




Library-Prep Information
BG293LV06-75BG293LV06-76
Sample #7576
Sample NameYWHAG-BG293LV06-75BYWHAG-BG293LV06-76B
Sample_Name_Alias
Index Well PositionC03D03
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp280281
Peak_Molarity102.0078.90
libSampleQC_DNA_WellDNA_Library_set72/set1/C3.pngDNA_Library_set72/set1/D3.png
RIN9.910.0
libSample_RNA_WellRNA_Library_set72/set1/C3.pngRNA_Library_set72/set1/D3.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-75BG293LV06-76
RBPYWHAGYWHAG
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45004501




Sequencing Information
BG293LV06-75BG293LV06-76
Sample_IDBG293LV06-75BG293LV06-76
Sample NameYWHAG-BG293LV06-75BYWHAG-BG293LV06-76B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads59,077,72940,885,491
total_aligned_reads53,548,05936,527,787
unique_aligned_reads50,063,10434,221,358
percent_uniqueAligned0.847410.83700
correlation_replicates0.9962630.996263
spikein_reads229,94295,656
percent_spikeins0.003890.00234
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30693070




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database