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PCBP1
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-67
BG293LV06-68
idx
0
0
TRCN#_or_BGC#
TRCN0000074668
TRCN0000074668
shRNA_or_gRNA_sequence
CCGGCCCATGATCCAACTGTGTAATCTCGAGATTACACAGTTGGATCATGGGTTTTTG
CCGGCCCATGATCCAACTGTGTAATCTCGAGATTACACAGTTGGATCATGGGTTTTTG
PAM
Name
PCBP1
PCBP1
Sample_ID
BG293LV06-67
BG293LV06-68
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
PCBP1
PCBP1
qPCR_result
81.6
81.2
Ave_qPCR
81.4
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10154
10155
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-67
BG293LV06-68
Sample_ID
BG293LV06-67
BG293LV06-68
Sample Name
Sample Name
PCBP1-BG293LV06-67B
PCBP1-BG293LV06-68B
RBP
PCBP1
PCBP1
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13504
13505
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-67
BG293LV06-68
Sample #
69
70
Sample Name
PCBP1-BG293LV06-67B
PCBP1-BG293LV06-68B
Sample_Name_Alias
Index Well Position
E02
F02
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
277
280
Peak_Molarity
88.80
86.60
libSampleQC_DNA_Well
DNA_Library_set72/set1/E2.png
DNA_Library_set72/set1/F2.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set72/set1/E2.png
RNA_Library_set72/set1/F2.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-67
BG293LV06-68
RBP
PCBP1
PCBP1
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4494
4495
Sequencing Information
BG293LV06-67
BG293LV06-68
Sample_ID
BG293LV06-67
BG293LV06-68
Sample Name
PCBP1-BG293LV06-67B
PCBP1-BG293LV06-68B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
72,274,876
26,436,526
total_aligned_reads
64,672,370
24,139,633
unique_aligned_reads
60,215,990
22,500,258
percent_uniqueAligned
0.83315
0.85110
correlation_replicates
0.998407
0.998407
spikein_reads
212,056
89,014
percent_spikeins
0.00293
0.00337
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3063
3064
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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