PCBP1      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-67BG293LV06-68
idx00
TRCN#_or_BGC#TRCN0000074668TRCN0000074668
shRNA_or_gRNA_sequenceCCGGCCCATGATCCAACTGTGTAATCTCGAGATTACACAGTTGGATCATGGGTTTTTGCCGGCCCATGATCCAACTGTGTAATCTCGAGATTACACAGTTGGATCATGGGTTTTTG
PAM
NamePCBP1PCBP1
Sample_IDBG293LV06-67BG293LV06-68
transduction_Date9/5/249/5/24
daysD4D4
RBP_namePCBP1PCBP1
qPCR_result81.681.2
Ave_qPCR81.4
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1015410155




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-67BG293LV06-68
Sample_IDBG293LV06-67BG293LV06-68
Sample Name
Sample NamePCBP1-BG293LV06-67BPCBP1-BG293LV06-68B
RBPPCBP1PCBP1
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1350413505




Library-Prep Information
BG293LV06-67BG293LV06-68
Sample #6970
Sample NamePCBP1-BG293LV06-67BPCBP1-BG293LV06-68B
Sample_Name_Alias
Index Well PositionE02F02
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp277280
Peak_Molarity88.8086.60
libSampleQC_DNA_WellDNA_Library_set72/set1/E2.pngDNA_Library_set72/set1/F2.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set72/set1/E2.pngRNA_Library_set72/set1/F2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-67BG293LV06-68
RBPPCBP1PCBP1
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44944495




Sequencing Information
BG293LV06-67BG293LV06-68
Sample_IDBG293LV06-67BG293LV06-68
Sample NamePCBP1-BG293LV06-67BPCBP1-BG293LV06-68B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads72,274,87626,436,526
total_aligned_reads64,672,37024,139,633
unique_aligned_reads60,215,99022,500,258
percent_uniqueAligned0.833150.85110
correlation_replicates0.9984070.998407
spikein_reads212,05689,014
percent_spikeins0.002930.00337
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30633064




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database