DDX17      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-115BG293LV06-116
idx00
TRCN#_or_BGC#TRCN0000074389TRCN0000074389
shRNA_or_gRNA_sequenceCCACAAGTTGATCCAACTAATCTCGAGATTAGTTGGATCAACTTGTGGCCACAAGTTGATCCAACTAATCTCGAGATTAGTTGGATCAACTTGTGG
PAM
NameDDX17DDX17
Sample_IDBG293LV06-115BG293LV06-116
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameDDX17DDX17
qPCR_result95.595.6
Ave_qPCR95.6
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1020210203




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-115BG293LV06-116
Sample_IDBG293LV06-115BG293LV06-116
Sample Name
Sample NameDDX17-BG293LV06-115BDDX17-BG293LV06-116B
RBPDDX17DDX17
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1355213553




Library-Prep Information
BG293LV06-115BG293LV06-116
Sample #115116
Sample NameDDX17-BG293LV06-115BDDX17-BG293LV06-116B
Sample_Name_Alias
Index Well PositionC08D08
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-10-022024-10-02
Lib_IDLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp287293
Peak_Molarity79.4087.60
libSampleQC_DNA_WellDNA_Library_set72/set1/C8.pngDNA_Library_set72/set1/D8.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set72/set1/C8.pngRNA_Library_set72/set1/D8.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-10-042024-10-04
Sample_IDBG293LV06-115BG293LV06-116
RBPDDX17DDX17
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBB
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID45404541




Sequencing Information
BG293LV06-115BG293LV06-116
Sample_IDBG293LV06-115BG293LV06-116
Sample NameDDX17-BG293LV06-115BDDX17-BG293LV06-116B
Pool IDPool-241004Pool-241004
LocalServer_folderset72set72
total_reads46,102,02855,870,145
total_aligned_reads42,848,15652,935,601
unique_aligned_reads39,995,24949,638,671
percent_uniqueAligned0.867540.88847
correlation_replicates0.9759470.975947
spikein_reads179,136202,798
percent_spikeins0.003890.00363
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31093110




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database