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DDX17
shRNA
in 293T
Batch: BG293LV06
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Sequenced
)
BG293LV06-115
BG293LV06-116
idx
0
0
TRCN#_or_BGC#
TRCN0000074389
TRCN0000074389
shRNA_or_gRNA_sequence
CCACAAGTTGATCCAACTAATCTCGAGATTAGTTGGATCAACTTGTGG
CCACAAGTTGATCCAACTAATCTCGAGATTAGTTGGATCAACTTGTGG
PAM
Name
DDX17
DDX17
Sample_ID
BG293LV06-115
BG293LV06-116
transduction_Date
9/5/24
9/5/24
days
D4
D4
RBP_name
DDX17
DDX17
qPCR_result
95.5
95.6
Ave_qPCR
95.6
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
10202
10203
Western Blot
Western Blot info was not avaliable
Experiment Status
BG293LV06-115
BG293LV06-116
Sample_ID
BG293LV06-115
BG293LV06-116
Sample Name
Sample Name
DDX17-BG293LV06-115B
DDX17-BG293LV06-116B
RBP
DDX17
DDX17
Cell_Line
293T
293T
Exp UID
Status
Sequenced
Sequenced
Status_date
2024-10-16
2024-10-16
Project
ENCORE2
ENCORE2
Note
ID
13552
13553
Library-Prep
Sequencing
Library-Prep Information
BG293LV06-115
BG293LV06-116
Sample #
115
116
Sample Name
DDX17-BG293LV06-115B
DDX17-BG293LV06-116B
Sample_Name_Alias
Index Well Position
C08
D08
Index_table
IDT_UniqueDualIndex_96_V2
IDT_UniqueDualIndex_96_V2
LibPrep_date
2024-10-02
2024-10-02
Lib_ID
Lib-241002
Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp
287
293
Peak_Molarity
79.40
87.60
libSampleQC_DNA_Well
DNA_Library_set72/set1/C8.png
DNA_Library_set72/set1/D8.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set72/set1/C8.png
RNA_Library_set72/set1/D8.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2024-10-04
2024-10-04
Sample_ID
BG293LV06-115
BG293LV06-116
RBP
DDX17
DDX17
Batch_ID
BG293LV06
BG293LV06
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
B
B
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4540
4541
Sequencing Information
BG293LV06-115
BG293LV06-116
Sample_ID
BG293LV06-115
BG293LV06-116
Sample Name
DDX17-BG293LV06-115B
DDX17-BG293LV06-116B
Pool ID
Pool-241004
Pool-241004
LocalServer_folder
set72
set72
total_reads
46,102,028
55,870,145
total_aligned_reads
42,848,156
52,935,601
unique_aligned_reads
39,995,249
49,638,671
percent_uniqueAligned
0.86754
0.88847
correlation_replicates
0.975947
0.975947
spikein_reads
179,136
202,798
percent_spikeins
0.00389
0.00363
original_ReadLength
101
101
QC_Status
ReadyToSubmit
ReadyToSubmit
ID
3109
3110
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
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