SQSTM1

General Information

Gene Name       : SQSTM1
Gene ID             : ENSG00000161011.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SQSTM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SQSTM1ENSG00000161011.1915.0136.7725.89ENCSR000AEF
HepG2SQSTM1ENSG00000161011.1999.7765.9182.84ENCSR985KAT
K562SQSTM1ENSG00000161011.1957.6350.4354.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SQSTM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SQSTM1 RNA is bound by 63 proteins.  







eCLIP assay for SQSTM1 is not avaliable on ENCORE database.





63 proteins are bound to SQSTM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5179263746179263832+3'-UTR4.9015030.31734HepG2SUB1
chr5179250944179251084+3'-UTR,CDS3.3486110.59354HepG2RPS3
chr5179264013179264067+3'-UTR4.177215.79513HepG2SUB1
chr5179249953179249985+3'-UTR,5'-UTR,CDS,intron-Proximal3.335785.37254HepG2SF3B4
chr5179264012179264138+3'-UTR3.8333913.23458K562IGF2BP2
chr5179263754179263858+3'-UTR3.1892421.99332K562DDX55
chr5179263683179263739+3'-UTR3.428015.31971K562IGF2BP1
chr5179263965179264009+3'-UTR5.258969.19937K562IGF2BP2
chr5179263761179263834+3'-UTR5.32539400.00000K562PABPC4
chr5179250844179250884+3'-UTR,CDS,intron-Proximal3.727156.42898K562AQR
chr5179263940179263968+3'-UTR3.466144.48983K562TIA1
chr5179263934179264011+3'-UTR3.3669415.80986K562UPF1
chr5179263683179263745+3'-UTR4.1819042.78550K562PABPC4
chr5179263592179263644+3'-UTR,CDS3.115798.16665K562RBM15
chr5179263873179263885+3'-UTR3.360403.66308K562UPF1
chr5179251116179251205+3'-UTR,CDS,intron-Proximal3.184029.02130K562EFTUD2
chr5179249952179250028+3'-UTR,5'-UTR,CDS,intron-Proximal3.310835.50236K562SRSF1
chr5179263956179264058+3'-UTR3.7646712.65480HepG2DDX55
chr5179263626179263682+3'-UTR,CDS3.449094.41670HepG2AKAP1
chr5179250908179250993+3'-UTR,CDS3.599558.12996HepG2PPIG
chr5179263643179263747+3'-UTR,CDS3.9963520.78763HepG2DDX55
chr5179251060179251088+3'-UTR,CDS,intron-Proximal3.039403.99718K562FXR2
chr5179250951179251001+3'-UTR,CDS3.233453.07497K562SND1
chr5179264014179264057+3'-UTR4.3075617.81675K562PABPC4
chr5179263932179263967+3'-UTR3.335588.44273K562PABPC4
chr5179263746179263829+3'-UTR3.2449610.31663HepG2LARP4
chr5179264548179264605+3'-UTR3.933115.08270HepG2SF3B4
chr5179264612179264699+3'-UTR7.0205820.95083HepG2SF3B4
chr5179263610179263760+3'-UTR,CDS3.115826.66557HepG2G3BP1
chr5179263762179263845+3'-UTR3.0263610.96521K562UPF1
chr5179263742179263878+3'-UTR3.8928111.88760HepG2UPF1
chr5179264142179264213+3'-UTR3.080146.81933K562UPF1
chr5179263660179263742+3'-UTR3.880015.85347HepG2UPF1
chr5179264125179264189+3'-UTR4.170038.45080K562IGF2BP1
chr5179251128179251225+3'-UTR,CDS,intron-Proximal4.0216310.41397HepG2EFTUD2
chr5179263757179263841+3'-UTR3.103874.74299HepG2AKAP1
chr5179263741179263829+3'-UTR3.360867.62281HepG2PABPN1
chr5179250052179250098+3'-UTR,CDS,intron-Proximal4.6661816.99417K562AQR
chr5179250026179250066+3'-UTR,CDS,intron-Proximal4.4681436.61311HepG2PRPF8
chr5179263982179264050+3'-UTR3.611914.17280HepG2AKAP1
chr5179263961179264091+3'-UTR3.9359710.90685HepG2UPF1
chr5179263759179263827+3'-UTR3.191537.18983K562APOBEC3C
chr5179263690179263748+3'-UTR3.229223.32520K562APOBEC3C
chr5179263968179264006+3'-UTR4.1073311.86516K562TIA1
chr5179263981179264128+3'-UTR4.2853115.61513K562ZC3H11A
chr5179263759179263828+3'-UTR3.0322413.51798K562DDX6
chr5179249898179249948+5'-UTR,CDS,intron-Distal,intron-Proximal5.3021815.55949K562SF3B4
chr5179248061179248164+5'-UTR,CDS,intron-Distal,intron-Proximal3.274387.48572K562FMR1
chr5179249860179249894+5'-UTR,CDS,intron-Distal,intron-Proximal3.677595.94541K562TIA1
chr5179248686179248743+5'-UTR,intron-Distal,intron-Proximal3.383388.18485K562CSTF2T
chr5179248134179248179+5'-UTR,CDS,intron-Distal,intron-Proximal4.069804.96235K562XRN2
chr5179247915179247954+5'-UTR,CDS,intron-Distal4.605414.48994K562RBM15
chr5179248576179248693+5'-UTR,intron-Distal3.6649215.97029HepG2FKBP4
chr5179248021179248140+5'-UTR,CDS,intron-Distal3.4608310.02370HepG2DDX3X
chr5179248088179248134+5'-UTR,CDS,intron-Distal3.898205.66718K562DHX30
chr5179248618179248686+5'-UTR,intron-Distal4.2289723.92838K562CSTF2T
chr5179249894179249949+5'-UTR,CDS,intron-Distal,intron-Proximal4.182493.93614HepG2AQR
chr5179248076179248122+5'-UTR,CDS,intron-Distal3.291616.74466K562DROSHA
chr5179249747179249819+5'-UTR,intron-Distal,intron-Proximal4.047363.91243HepG2NKRF
chr5179248612179248693+5'-UTR,intron-Distal3.0960519.53490K562GEMIN5
chr5179248616179248691+5'-UTR,intron-Distal3.581459.05428K562FUS
chr5179248611179248714+5'-UTR,intron-Distal,intron-Proximal4.7034623.76106K562NONO
chr5179248140179248180+5'-UTR,CDS,intron-Distal,intron-Proximal4.304703.25089HepG2AQR
chr5179248679179248704+5'-UTR,intron-Distal3.288813.06314K562TBRG4
chr5179249904179249948+5'-UTR,CDS,intron-Distal,intron-Proximal4.6729130.44755HepG2SF3A3
chr5179248616179248677+5'-UTR,intron-Distal4.5020211.90236HepG2PRPF4
chr5179248559179248616+5'-UTR,CDS,intron-Distal4.173479.46556HepG2PRPF4
chr5179248527179248614+5'-UTR,CDS,intron-Distal,intron-Proximal3.666939.23213K562FUS
chr5179248592179248705+5'-UTR,intron-Distal5.0945118.38402K562EWSR1
chr5179248688179248714+5'-UTR,intron-Distal,intron-Proximal3.468627.61507HepG2CSTF2T
chr5179248547179248680+5'-UTR,CDS,intron-Distal,intron-Proximal3.948826.59508HepG2FASTKD2
chr5179248612179248719+5'-UTR,intron-Distal,intron-Proximal3.6971024.87582K562DROSHA
chr5179247912179247952+5'-UTR,CDS,intron-Distal3.476633.59926K562DDX3X
chr5179248618179248706+5'-UTR,intron-Distal3.098243.77448HepG2IGF2BP3
chr5179248615179248678+5'-UTR,intron-Distal3.512266.37240K562GTF2F1
chr5179248131179248176+5'-UTR,CDS,intron-Distal,intron-Proximal3.486525.20589K562DDX51
chr5179248565179248611+5'-UTR,intron-Distal4.5034111.66886K562NONO
chr5179248019179248134+5'-UTR,CDS,intron-Distal4.3084310.76238HepG2RPS3
chr5179247944179248036+5'-UTR,CDS,intron-Distal3.235583.44337K562METAP2
chr5179248549179248605+5'-UTR,CDS,intron-Distal,intron-Proximal4.135783.51089HepG2DGCR8
chr5179248119179248154+5'-UTR,CDS,intron-Distal,intron-Proximal3.8587314.92191HepG2PRPF8
chr5179248571179248619+5'-UTR,intron-Distal3.895636.25023HepG2EFTUD2
chr5179248619179248688+5'-UTR,intron-Distal3.7357422.93185HepG2CSTF2T
chr5179248555179248710+5'-UTR,CDS,intron-Distal,intron-Proximal4.6303111.24367K562XRN2
chr5179249628179249682+5'-UTR,intron-Distal3.437246.15110K562EWSR1
chr5179248628179248686+5'-UTR,intron-Distal3.429717.55494HepG2EFTUD2
chr5179248542179248618+5'-UTR,CDS,intron-Distal,intron-Proximal3.5720316.20384K562CSTF2T
chr5179248623179248683+5'-UTR,intron-Distal3.238393.03570HepG2NCBP2
chr5179247971179248001+5'-UTR,CDS,intron-Distal3.404144.24159K562RBM15
chr5179248546179248695+5'-UTR,CDS,intron-Distal,intron-Proximal3.2452015.53066HepG2NKRF
chr5179249901179249953+5'-UTR,CDS,intron-Distal,intron-Proximal4.8602731.36942HepG2SF3B4
chr5179248559179248663+5'-UTR,CDS,intron-Distal3.315409.27877K562DDX6
chr5179247932179248021+5'-UTR,CDS,intron-Distal3.754113.68253HepG2DDX3X
chr5179248613179248679+5'-UTR,intron-Distal3.830606.88602K562AKAP8L
chr5179260588179260689+CDS,intron-Distal3.2456911.71363K562UCHL5
chr5179251321179251388+CDS,intron-Proximal5.2766414.57623HepG2PRPF8
chr5179263407179263485+CDS,intron-Proximal3.4678616.26791K562AQR
chr5179260599179260671+CDS,intron-Distal3.040686.16569K562LIN28B
chr5179260154179260216+CDS4.0240010.72744HepG2G3BP1
chr5179251248179251313+CDS3.861528.44175HepG2RPS3
chr5179252143179252228+CDS,intron-Proximal4.311263.80886HepG2TRA2A
chr5179263433179263518+CDS,intron-Proximal3.382025.51186K562PCBP1
chr5179260580179260682+CDS,intron-Distal,intron-Proximal3.598925.50236K562SRSF1
chr5179260762179260813+CDS,intron-Distal,intron-Proximal4.295273.59236HepG2AQR
chr5179248516179248565+CDS,intron-Distal,intron-Proximal5.5325612.73454K562NONO
chr5179260781179260791+CDS,intron-Distal,intron-Proximal4.6673611.83800K562AQR
chr5179252158179252268+CDS,intron-Proximal3.876405.58296HepG2EFTUD2
chr5179260152179260222+CDS3.149145.76198K562RBM15
chr5179252223179252232+CDS,intron-Proximal4.2640419.87661K562AQR
chr5179260586179260599+CDS,intron-Distal,intron-Proximal3.390173.97184HepG2G3BP1
chr5179260532179260594+CDS,intron-Distal,intron-Proximal3.651109.23873HepG2SF3A3
chr5179251321179251405+CDS,intron-Proximal5.8662828.70535K562AQR
chr5179252145179252233+CDS,intron-Proximal4.1556011.23452K562RPS3
chr5179263448179263549+CDS,intron-Proximal3.232187.87634HepG2G3BP1
chr5179260216179260247+CDS,intron-Proximal3.191546.92553HepG2G3BP1
chr5179252139179252274+CDS,intron-Proximal3.531818.99259HepG2AQR
chr5179260192179260250+CDS,intron-Proximal3.5553511.11819HepG2PPIG
chr5179260036179260132+CDS3.134228.90361HepG2G3BP1
chr5179260189179260298+CDS,intron-Proximal3.006168.50906K562BUD13
chr5179260030179260126+CDS,intron-Proximal3.6913910.57812K562UCHL5
chr5179260040179260095+CDS3.544455.87410K562LIN28B
chr5179260580179260609+CDS,intron-Distal,intron-Proximal3.044226.06509HepG2PPIG
chr5179263377179263466+CDS,intron-Proximal4.264576.58230HepG2AQR
chr5179251250179251319+CDS4.4204319.31597K562RPS3
chr5179252144179252179+CDS,intron-Proximal3.146785.37660HepG2PRPF8
chr5179252144179252227+CDS,intron-Proximal3.043164.82775HepG2RPS3
chr5179263435179263528+CDS,intron-Proximal3.6639112.67681HepG2RPS3
chr5179252199179252270+CDS,intron-Proximal4.2322125.97318HepG2PRPF8
chr5179260206179260284+CDS,intron-Proximal3.081679.07363HepG2BUD13
chr5179248200179248287+intron-Distal,intron-Proximal3.428598.62459K562RBM15
chr5179248219179248296+intron-Distal,intron-Proximal4.557419.80960K562NONO
chr5179248831179248920+intron-Distal6.0357314.27215K562GTF2F1
chr5179248374179248417+intron-Distal3.394978.14869K562CSTF2T
chr5179250561179250672+intron-Distal3.139166.19085K562NONO
chr5179248204179248283+intron-Distal,intron-Proximal4.319225.45992HepG2SUPV3L1
chr5179263308179263366+intron-Distal,intron-Proximal3.473844.29246HepG2SF3B4
chr5179243865179243929+intron-Distal4.279334.86859HepG2CSTF2T
chr5179252953179253005+intron-Distal5.860019.79297K562LIN28B
chr5179248456179248499+intron-Distal,intron-Proximal3.762606.04229K562RBM15
chr5179234043179234116+intron-Distal3.250233.43220HepG2FAM120A
chr5179263369179263421+intron-Distal,intron-Proximal3.722087.33329HepG2SF3B4
chr5179248249179248324+intron-Distal3.047405.22783K562CSTF2T
chr5179248830179248931+intron-Distal3.3935024.11970K562DROSHA
chr5179238358179238480+intron-Distal,intron-Proximal3.906335.82228HepG2RBFOX2
chr5179248454179248503+intron-Distal,intron-Proximal3.946835.70053K562GEMIN5
chr5179248154179248193+intron-Distal,intron-Proximal3.1427211.76414HepG2PRPF8
chr5179248755179248920+intron-Distal,intron-Proximal3.6609911.05139K562FUS
chr5179248837179248919+intron-Distal3.565109.04230K562NONO
chr5179260467179260553+intron-Distal,intron-Proximal4.5312715.05502HepG2RBFOX2
chr5179248853179248917+intron-Distal4.289668.11292HepG2EFTUD2
chr5179256982179257078+intron-Distal3.225894.14989HepG2ILF3
chr5179248457179248528+intron-Distal,intron-Proximal3.4711210.12555HepG2XRN2
chr5179252741179252826+intron-Distal3.292076.60455HepG2XRN2
chr5179233710179233837+intron-Distal6.264969.30296K562DROSHA
chr5179248455179248516+intron-Distal,intron-Proximal4.1757411.11767K562NONO
chr5179253179179253235+intron-Distal3.668715.95302HepG2HNRNPC
chr5179260502179260580+intron-Distal,intron-Proximal3.159719.49524HepG2SF3B4
chr5179250500179250616+intron-Distal4.492785.69052K562FUS
chr5179260405179260476+intron-Distal4.630085.17013K562RBM15
chr5179251997179252054+intron-Distal,intron-Proximal4.140794.49655K562CSTF2T
chr5179248839179248919+intron-Distal3.637945.18092K562DDX6
chr5179248830179248934+intron-Distal3.7370213.66230HepG2XRN2
chr5179248829179248906+intron-Distal3.885073.94795K562XRN2
chr5179248455179248542+intron-Distal,intron-Proximal3.054058.03344K562CSTF2T
chr5179248373179248416+intron-Distal3.478056.54247K562NONO
chr5179248771179248871+intron-Distal,intron-Proximal4.2698612.66861HepG2HNRNPM
chr5179248281179248330+intron-Distal3.981796.28005HepG2XPO5
chr5179249348179249416+intron-Distal4.7410916.23318HepG2HNRNPM
chr5179252282179252367+intron-Distal,intron-Proximal4.598689.44190K562PRPF8
chr5179244147179244211+intron-Distal4.116313.69819HepG2CSTF2T
chr5179238367179238494+intron-Distal,intron-Proximal4.525445.83275HepG2PRPF4
chr5179248284179248320+intron-Distal4.182757.17310HepG2XRN2
chr5179248828179248926+intron-Distal3.4722212.66326K562AKAP8L
chr5179250561179250643+intron-Distal4.775515.51745K562XRN2
chr5179248389179248436+intron-Distal4.178935.72424HepG2FKBP4
chr5179248459179248512+intron-Distal,intron-Proximal4.136643.26022HepG2PRPF4
chr5179248960179249022+intron-Distal4.006005.59811K562LSM11
chr5179248828179248922+intron-Distal3.7312017.16492HepG2CSTF2T
chr5179248455179248499+intron-Distal,intron-Proximal3.256673.30889K562GTF2F1
chr5179260342179260405+intron-Distal,intron-Proximal4.741275.17013K562RBM15
chr5179248453179248503+intron-Distal,intron-Proximal3.586519.62104HepG2CSTF2T
chr5179234037179234100+intron-Distal3.458564.84557HepG2CSTF2T
chr5179250161179250210+intron-Distal3.229867.52067K562EFTUD2
chr5179248832179248909+intron-Distal4.199178.60474HepG2GTF2F1
chr5179248808179248922+intron-Distal3.0561411.80760HepG2NKRF
chr5179248829179248927+intron-Distal3.7358920.99740K562CSTF2T
chr5179249121179249150+intron-Distal3.802356.18635K562TIA1
chr5179248194179248247+intron-Distal,intron-Proximal3.586436.99701HepG2XRN2
chr5179248293179248338+intron-Distal3.497283.66782HepG2HNRNPM
chr5179248450179248506+intron-Distal,intron-Proximal3.082523.78108K562FUS
chr5179248277179248423+intron-Distal3.1689813.78386HepG2CSTF2T
chr5179248503179248548+intron-Distal,intron-Proximal3.390717.92456HepG2CSTF2T
chr5179248218179248274+intron-Distal,intron-Proximal5.2159012.59891K562GEMIN5
chr5179244333179244390+intron-Distal3.034563.04847HepG2CSTF2T
chr5179248834179248907+intron-Distal3.665388.38386K562EWSR1
chr5179260791179260828+intron-Distal,intron-Proximal5.7144119.08640K562AQR
chr5179257412179257467+intron-Distal3.126194.83241HepG2HNRNPC
chr5179248825179248920+intron-Distal3.096744.06906K562TAF15
chr5179248357179248404+intron-Distal3.240143.31097K562SLTM
chr5179248215179248266+intron-Distal,intron-Proximal3.393493.39614HepG2RBM22
chr5179248205179248269+intron-Distal,intron-Proximal4.049354.70114K562FUS
chr5179248474179248507+intron-Distal,intron-Proximal4.193385.20772HepG2FKBP4
chr5179248203179248275+intron-Distal,intron-Proximal4.0049510.30373HepG2EFTUD2
chr5179248346179248394+intron-Distal4.895789.18633K562GEMIN5
chr5179233714179233783+intron-Distal4.000993.90256HepG2PRPF4
chr5179248346179248414+intron-Distal3.364046.54596HepG2XRN2
chr5179259965179260023+intron-Proximal4.396294.77050HepG2SF3B4
chr5179250066179250093+intron-Proximal4.5648636.40792HepG2PRPF8
chr5179251126179251173+intron-Proximal3.505676.06370HepG2BUD13
chr5179252233179252270+intron-Proximal5.0400724.81978K562AQR
chr5179251134179251170+intron-Proximal3.648514.24089HepG2PRPF8
chr5179250109179250141+intron-Proximal3.660703.76553K562PRPF8
chr5179251354179251399+intron-Proximal4.861223.69482HepG2RBM22
chr5179260246179260293+intron-Proximal3.899597.53394K562AQR
chr5179251090179251177+intron-Proximal3.494499.79280HepG2SF3B4
chr5179250060179250092+intron-Proximal3.277738.61085K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SQSTM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SQSTM1 is not available on ENCORE database.

  • 168 RBPs can affect the levels of SQSTM1.  








The Knockdown/knockout RNA-Seq assay for SQSTM1 is not available on ENCORE database.





168 RBPs can affect the gene expression of SQSTM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SQSTM1ENSG00000161011.152886.065001725.121900.742304.682802.50660HepG2AARS
SQSTM1ENSG00000161011.154849.717102292.621201.0808044.7100043.00340HepG2ACO1
SQSTM1ENSG00000161011.152042.106401419.272100.524802.192101.30250HepG2ADAR
SQSTM1ENSG00000161011.156212.289102693.311301.2056017.2712016.05740HepG2AKAP1
SQSTM1ENSG00000161011.156062.996703192.686000.9252014.2350012.08760HepG2AKAP8
SQSTM1ENSG00000161011.155838.715802303.088301.3420042.8281040.43060HepG2AKAP8L
SQSTM1ENSG00000161011.156517.076202228.325601.5482043.2841040.81270HepG2ASCC1
SQSTM1ENSG00000161011.153710.388902534.315200.549907.928005.68450HepG2ATP5C1
SQSTM1ENSG00000161011.158182.977503098.351601.40100101.8928098.98700HepG2AUH
SQSTM1ENSG00000161011.152568.842801760.110200.545403.859502.75140HepG2BCCIP
SQSTM1ENSG00000161011.154522.561502501.494700.8542017.7705016.44860HepG2BOP1
SQSTM1ENSG00000161011.152278.887201600.177000.510007.969106.75690HepG2CALR
SQSTM1ENSG00000161011.152832.320301642.849100.785705.494602.74350HepG2CDC40
SQSTM1ENSG00000161011.153948.892802117.115500.8992015.7028014.04100HepG2CIRBP
SQSTM1ENSG00000161011.153938.862302291.757000.7812033.2936031.57250HepG2CKAP4
SQSTM1ENSG00000161011.153352.786202296.552900.545807.035305.97840HepG2CPSF6
SQSTM1ENSG00000161011.154038.364302312.790200.8040017.4240014.94290HepG2CPSF7
SQSTM1ENSG00000161011.152007.433801455.453200.463805.365003.95000HepG2YBX3
SQSTM1ENSG00000161011.151470.041701086.829700.435603.281602.11710HepG2CSTF2
SQSTM1ENSG00000161011.15882.813601249.96590-0.501702.788101.42780HepG2CSTF2T
SQSTM1ENSG00000161011.156192.103902142.329701.5311032.3515030.65360HepG2CELF1
SQSTM1ENSG00000161011.153945.469902303.193000.7765038.7278036.60950HepG2DAZAP1
SQSTM1ENSG00000161011.152295.694301457.469000.6554014.1089011.84680HepG2DDX1
SQSTM1ENSG00000161011.152206.032101345.080600.713707.796906.71610HepG2DDX21
SQSTM1ENSG00000161011.151154.517001618.99960-0.487802.840101.53690HepG2DDX27
SQSTM1ENSG00000161011.153696.655402579.637800.519005.243804.40600HepG2DDX3X
SQSTM1ENSG00000161011.158235.542402216.788201.8933053.0034050.82270HepG2DDX6
SQSTM1ENSG00000161011.151719.331801378.397100.318802.638701.67900HepG2DHX30
SQSTM1ENSG00000161011.152421.279601429.124900.7605019.7485018.05410HepG2DNAJC21
SQSTM1ENSG00000161011.151721.670401416.536000.281304.174703.40500HepG2DNAJC2
SQSTM1ENSG00000161011.153262.616902130.232500.614907.116006.19700HepG2EIF2S1
SQSTM1ENSG00000161011.152706.168802130.423600.345003.791602.42410HepG2EIF2S2
SQSTM1ENSG00000161011.154187.487901172.477701.8364057.6515054.19130HepG2EIF3D
SQSTM1ENSG00000161011.1513704.633702292.473302.5796073.8806070.86230HepG2EIF4B
SQSTM1ENSG00000161011.154055.647702272.531900.835508.169406.87080HepG2EIF4G1
SQSTM1ENSG00000161011.151203.646602432.80420-1.0152020.2648017.77110HepG2ESF1
SQSTM1ENSG00000161011.154947.514403557.285600.4758012.2702011.15040HepG2ETF1
SQSTM1ENSG00000161011.153891.446702239.975700.7967013.7784011.99410HepG2EWSR1
SQSTM1ENSG00000161011.154094.653002835.842800.529905.375004.33200HepG2FIP1L1
SQSTM1ENSG00000161011.153267.713502155.034200.600506.332903.87320HepG2FMR1
SQSTM1ENSG00000161011.155485.266102203.499701.315703.352402.62460HepG2G3BP1
SQSTM1ENSG00000161011.152450.679001351.888500.858105.609504.14870HepG2GNB2L1
SQSTM1ENSG00000161011.152096.767001413.767800.568503.685401.87960HepG2GTF2F1
SQSTM1ENSG00000161011.152526.566202188.575000.207102.387301.47270HepG2HDGF
SQSTM1ENSG00000161011.154182.299802264.525300.885006.473304.31730HepG2HNRNPA0
SQSTM1ENSG00000161011.151768.079801442.816600.293202.299301.70560HepG2HNRNPA1
SQSTM1ENSG00000161011.153446.436202232.716800.626208.795407.60150HepG2HNRNPK
SQSTM1ENSG00000161011.153557.239702097.930200.7617036.7835034.65800HepG2HNRNPL
SQSTM1ENSG00000161011.152712.894401956.595300.471406.320304.96250HepG2HNRNPM
SQSTM1ENSG00000161011.156368.700203475.397600.873706.952305.04910HepG2HSPD1
SQSTM1ENSG00000161011.154486.930303568.259000.330404.464403.56330HepG2IGF2BP1
SQSTM1ENSG00000161011.155755.426602239.584801.3616034.3098032.24400HepG2IGF2BP2
SQSTM1ENSG00000161011.152599.963001628.487900.6749025.3491023.40810HepG2ILF2
SQSTM1ENSG00000161011.152851.625502095.515600.444408.701806.98240HepG2KIF1C
SQSTM1ENSG00000161011.152559.678803473.10120-0.440303.015701.71250HepG2KRR1
SQSTM1ENSG00000161011.157778.639602659.064601.5485031.9935029.14440HepG2LARP4
SQSTM1ENSG00000161011.152165.251301324.762200.7087010.016207.98340HepG2LARP7
SQSTM1ENSG00000161011.153404.872902376.880700.518405.258004.36000HepG2MAGOH
SQSTM1ENSG00000161011.154931.928802389.988701.045005.175304.33740HepG2MATR3
SQSTM1ENSG00000161011.151850.153801227.049500.592403.897702.65260HepG2METAP2
SQSTM1ENSG00000161011.151523.730102533.60380-0.733605.433804.04790HepG2MTPAP
SQSTM1ENSG00000161011.154965.589203293.657900.592204.690202.83520HepG2NKRF
SQSTM1ENSG00000161011.153563.691802283.859500.6418010.499509.04510HepG2NOL12
SQSTM1ENSG00000161011.153409.403901589.918301.100508.577206.60650HepG2NONO
SQSTM1ENSG00000161011.1511806.963202445.669402.2712025.8569023.22760HepG2PABPC1
SQSTM1ENSG00000161011.153800.546702177.707200.8033011.4942010.04950HepG2PABPC4
SQSTM1ENSG00000161011.152334.570101578.037300.5649012.8694011.26360HepG2PARN
SQSTM1ENSG00000161011.154601.301802355.998600.9656010.695509.62780HepG2PCBP1
SQSTM1ENSG00000161011.152442.909701419.024200.783606.590705.04480HepG2PCBP2
SQSTM1ENSG00000161011.151371.444001863.19610-0.442107.340206.15270HepG2PRPF4
SQSTM1ENSG00000161011.153083.183702397.378700.362905.292004.58590HepG2PTBP1
SQSTM1ENSG00000161011.153025.758602180.237300.472703.518402.85710HepG2PUF60
SQSTM1ENSG00000161011.157257.574702314.527601.64870200.30210197.27920HepG2PUM1
SQSTM1ENSG00000161011.1512873.360202312.768902.4766050.4979047.96460HepG2PUM2
SQSTM1ENSG00000161011.153068.415302335.129800.393905.542104.72550HepG2PUS1
SQSTM1ENSG00000161011.159566.171001368.850102.8049057.6861054.98810HepG2RAVER1
SQSTM1ENSG00000161011.153581.728302609.552000.456807.174905.88270HepG2RBM15
SQSTM1ENSG00000161011.1510719.384502973.240101.8500030.7058029.34600HepG2RBM22
SQSTM1ENSG00000161011.153109.927902356.348300.400204.961004.08220HepG2RBM25
SQSTM1ENSG00000161011.152476.488001597.502600.632407.123505.52460HepG2RBM27
SQSTM1ENSG00000161011.152119.392501297.247800.708107.937606.16280HepG2RCC2
SQSTM1ENSG00000161011.152317.782302668.00080-0.203002.178601.68680HepG2NELFE
SQSTM1ENSG00000161011.151795.808802484.97360-0.468609.435808.39890HepG2RECQL
SQSTM1ENSG00000161011.159084.451403903.178601.2186037.9731036.12270HepG2RPLP0
SQSTM1ENSG00000161011.152784.507501140.951701.2871038.0280036.20670HepG2RPS19
SQSTM1ENSG00000161011.151928.779701473.226000.388602.798401.99350HepG2RPS2
SQSTM1ENSG00000161011.153370.380701503.946001.1641022.4588019.51820HepG2RPS5
SQSTM1ENSG00000161011.155913.240701319.875502.1634017.5495015.88460HepG2RRP9
SQSTM1ENSG00000161011.152133.988401419.758100.5878015.6415014.29650HepG2SAFB2
SQSTM1ENSG00000161011.152720.831001144.997301.2486027.6417025.00350HepG2SERBP1
SQSTM1ENSG00000161011.156245.382102638.548601.242906.979505.87410HepG2SF3A3
SQSTM1ENSG00000161011.155634.289202459.237701.1959015.9604014.41290HepG2SF3B1
SQSTM1ENSG00000161011.153604.437902495.869500.5301013.9602012.79050HepG2SF3B4
SQSTM1ENSG00000161011.153397.581601636.529601.053803.314701.69820HepG2SFPQ
SQSTM1ENSG00000161011.153016.260601336.533001.174203.031101.35870HepG2SLTM
SQSTM1ENSG00000161011.154546.389001655.667701.4572030.6111028.84950HepG2SMN1
SQSTM1ENSG00000161011.153587.273501398.612701.3588012.048709.97330HepG2SMNDC1
SQSTM1ENSG00000161011.1515934.210603358.178802.24630208.72800206.15890HepG2SRFBP1
SQSTM1ENSG00000161011.153619.222702645.948200.451802.408101.48230HepG2SRSF3
SQSTM1ENSG00000161011.156769.900202152.797901.65280137.57080134.26420HepG2SRSF5
SQSTM1ENSG00000161011.155084.750703560.009700.5142015.0501013.65260HepG2SRSF7
SQSTM1ENSG00000161011.1511560.089902119.502202.4473092.2646090.02840HepG2SRSF9
SQSTM1ENSG00000161011.151903.998002915.71790-0.6148017.7643016.70240HepG2SSB
SQSTM1ENSG00000161011.153585.364301894.133600.9205011.744709.42520HepG2STAU1
SQSTM1ENSG00000161011.153363.788102339.605900.523702.646701.57370HepG2STIP1
SQSTM1ENSG00000161011.152135.866701279.370700.739305.905904.16340HepG2SUB1
SQSTM1ENSG00000161011.154288.540302448.212000.808708.661107.66290HepG2SUCLG1
SQSTM1ENSG00000161011.154467.344801914.877201.2221038.6988035.78490HepG2SUPT6H
SQSTM1ENSG00000161011.155767.347701722.662501.7432044.3028042.24590HepG2SUPV3L1
SQSTM1ENSG00000161011.151644.541302341.77480-0.509908.732107.82610HepG2TAF15
SQSTM1ENSG00000161011.154235.503001154.509701.8752033.4417030.88250HepG2TFIP11
SQSTM1ENSG00000161011.153031.081301549.088700.9683027.6038026.32670HepG2TIAL1
SQSTM1ENSG00000161011.152040.858901562.977600.384802.472401.93250HepG2TRIM56
SQSTM1ENSG00000161011.152624.007002130.178200.300703.204902.25780HepG2TUFM
SQSTM1ENSG00000161011.157331.535202425.866101.5955053.7691050.90470HepG2U2AF1
SQSTM1ENSG00000161011.154681.811401750.972301.418806.052104.53820HepG2U2AF2
SQSTM1ENSG00000161011.155253.975102254.877601.2203012.2917010.47630HepG2UBE2L3
SQSTM1ENSG00000161011.153039.257601017.483301.5786038.2143035.61910HepG2UCHL5
SQSTM1ENSG00000161011.154195.301602339.992700.842204.918604.03000HepG2UPF1
SQSTM1ENSG00000161011.155152.486102259.165601.189407.046906.16490HepG2UTP3
SQSTM1ENSG00000161011.152376.681501505.899800.658205.275103.83610HepG2XRCC6
SQSTM1ENSG00000161011.152145.934801838.701900.222803.021902.32580HepG2ZC3H8
SQSTM1ENSG00000161011.159837.818602573.539101.93450289.07640286.05240HepG2ZNF622
SQSTM1ENSG00000161011.154087.951502907.097900.491704.900403.25130K562ABCF1
SQSTM1ENSG00000161011.155027.106503052.053500.7198010.743809.71900K562AGGF1
SQSTM1ENSG00000161011.154376.708403353.927600.383904.535003.20170K562AKAP8
SQSTM1ENSG00000161011.155153.718403175.844800.6984013.1949011.61370K562AKAP8L
SQSTM1ENSG00000161011.152907.487503703.88170-0.349303.433602.04320K562APOBEC3C
SQSTM1ENSG00000161011.155841.211603759.761100.6355010.488009.45530K562AQR
SQSTM1ENSG00000161011.153851.734503332.310400.208902.453401.59690K562ATP5C1
SQSTM1ENSG00000161011.153024.358401966.727500.6207017.5844015.16600K562BCLAF1
SQSTM1ENSG00000161011.154565.617501973.923601.2096029.1763026.52700K562BOP1
SQSTM1ENSG00000161011.153242.962402025.198700.679106.487204.26440K562BUD13
SQSTM1ENSG00000161011.151976.000801539.093000.360402.854501.78000K562CCAR1
SQSTM1ENSG00000161011.154877.779703647.225800.419306.755404.89640K562CCDC124
SQSTM1ENSG00000161011.154051.837901894.720401.0965026.6672023.54700K562CIRBP
SQSTM1ENSG00000161011.155336.480903085.350400.7904010.840107.96260K562CKAP4
SQSTM1ENSG00000161011.155464.537903144.131900.797305.749104.15760K562CNOT7
SQSTM1ENSG00000161011.153688.385602975.036600.310003.448802.20810K562CPEB4
SQSTM1ENSG00000161011.153980.744102098.718900.9234024.4794022.11780K562CPSF6
SQSTM1ENSG00000161011.152172.012401492.056100.541609.556607.44040K562CSTF2
SQSTM1ENSG00000161011.158013.229305162.682500.6342014.0383011.96070K562CELF1
SQSTM1ENSG00000161011.154708.437503580.897700.394804.340702.47500K562DDX19B
SQSTM1ENSG00000161011.152512.304301621.755200.631403.962701.70550K562DDX1
SQSTM1ENSG00000161011.154298.896803434.877600.323604.575202.99620K562DDX21
SQSTM1ENSG00000161011.154701.600703078.604400.6108018.7727017.21830K562DDX47
SQSTM1ENSG00000161011.153203.250401741.905000.878807.418304.79860K562DDX51
SQSTM1ENSG00000161011.152183.698701655.068800.399803.718202.14470K562DNAJC21
SQSTM1ENSG00000161011.152727.950101668.452500.709204.252102.63100K562EEF2
SQSTM1ENSG00000161011.152602.051901611.568900.691104.686303.48310K562EFTUD2
SQSTM1ENSG00000161011.153840.673502857.875400.426306.123805.11730K562EIF2S2
SQSTM1ENSG00000161011.154055.749201724.685401.233506.913305.17840K562EIF3D
SQSTM1ENSG00000161011.153537.782102090.120600.759209.840608.13140K562FIP1L1
SQSTM1ENSG00000161011.154460.682402135.644901.0625024.2264021.62380K562FMR1
SQSTM1ENSG00000161011.153333.900101810.259500.8809014.0960011.89360K562FTO
SQSTM1ENSG00000161011.154123.853002400.134200.780805.654704.83360K562FXR1
SQSTM1ENSG00000161011.15472.578201159.69590-1.295103.603002.77170K562G3BP2
SQSTM1ENSG00000161011.153700.853402323.560000.6714012.6158010.39050K562GLRX3
SQSTM1ENSG00000161011.154443.155102003.657501.1488031.9167029.02930K562GPKOW
SQSTM1ENSG00000161011.155296.330003807.944100.475906.840805.64330K562GRSF1
SQSTM1ENSG00000161011.154045.376101868.291401.1145032.7737030.78040K562HNRNPC
SQSTM1ENSG00000161011.152451.891401668.614100.555107.825205.81980K562HNRNPF
SQSTM1ENSG00000161011.153929.605502782.174000.498107.372305.56690K562HNRNPL
SQSTM1ENSG00000161011.153447.003402823.428100.287803.632502.60860K562HNRNPU
SQSTM1ENSG00000161011.154208.195102833.454500.570505.839904.69750K562HSPD1
SQSTM1ENSG00000161011.152589.843401768.808900.550002.538401.56960K562IGF2BP2
SQSTM1ENSG00000161011.153165.865901798.724500.8155015.3487012.46890K562IGF2BP3
SQSTM1ENSG00000161011.154730.242703370.208100.489008.223806.60780K562KIF1C
SQSTM1ENSG00000161011.153456.910701711.142501.0144013.4386011.25090K562KRR1
SQSTM1ENSG00000161011.152382.824701809.877300.396703.996502.27020K562LARP7
SQSTM1ENSG00000161011.152440.445201857.974700.393304.288503.23890K562MAGOH
SQSTM1ENSG00000161011.154140.185303226.245800.359704.479103.01710K562MAK16
SQSTM1ENSG00000161011.152652.183201854.057300.516407.448805.84120K562MATR3
SQSTM1ENSG00000161011.153388.431001955.836600.7927016.1753013.95490K562METAP2
SQSTM1ENSG00000161011.157302.828004474.242500.7067011.852209.65290K562MSI2
SQSTM1ENSG00000161011.153166.929002442.911200.374407.352106.08960K562MTPAP
SQSTM1ENSG00000161011.152516.738001589.917800.662503.902502.30130K562NONO
SQSTM1ENSG00000161011.154292.145602714.345300.6610034.5595032.42570K562NSUN2
SQSTM1ENSG00000161011.154042.794802767.252700.546802.454201.53610K562PABPN1
SQSTM1ENSG00000161011.152311.337501816.624400.347403.396801.89800K562PCBP1
SQSTM1ENSG00000161011.154177.502402373.014400.8158012.8450010.67290K562PPIG
SQSTM1ENSG00000161011.152948.909501568.262800.910909.447308.05810K562PRPF8
SQSTM1ENSG00000161011.151374.552901675.18220-0.285402.327001.50360K562PSIP1
SQSTM1ENSG00000161011.153764.705301805.211501.0603030.8039028.67770K562PTBP1
SQSTM1ENSG00000161011.1510737.680704579.958801.229206.094104.88460K562PUF60
SQSTM1ENSG00000161011.156359.133004872.600100.384005.161703.67160K562PUM1
SQSTM1ENSG00000161011.156791.189504773.065300.5086011.321409.37790K562PUM2
SQSTM1ENSG00000161011.155283.500103149.246500.7464013.4536012.30140K562PUS1
SQSTM1ENSG00000161011.154359.066403068.731600.506305.116504.33260K562RBM15
SQSTM1ENSG00000161011.153293.211701730.450300.9282019.0207016.59600K562RBM22
SQSTM1ENSG00000161011.152595.971801687.266100.621507.628205.09990K562RBM34
SQSTM1ENSG00000161011.152875.460501528.691600.9114020.1079017.46950K562RCC2
SQSTM1ENSG00000161011.152453.619401596.859800.619603.505602.58320K562RPS19
SQSTM1ENSG00000161011.152756.642601602.839400.782204.252302.60100K562RRP9
SQSTM1ENSG00000161011.155426.454702678.289401.0186018.0049016.07220K562SF3A3
SQSTM1ENSG00000161011.153161.268301905.923000.729909.105307.26730K562SF3B1
SQSTM1ENSG00000161011.151784.482301449.127200.300202.362101.43230K562SRFBP1
SQSTM1ENSG00000161011.153627.569202743.958300.4026010.393508.70670K562SRPK2
SQSTM1ENSG00000161011.153140.973501769.818500.8275018.5968016.78290K562SRSF1
SQSTM1ENSG00000161011.152885.097602349.361800.296302.850601.77790K562SRSF4
SQSTM1ENSG00000161011.152566.541301671.730900.618408.439306.50780K562SRSF5
SQSTM1ENSG00000161011.154166.109503065.152900.442609.161607.01870K562SRSF7
SQSTM1ENSG00000161011.153815.246602507.753600.605307.524405.39330K562STAU1
SQSTM1ENSG00000161011.153277.538201517.358301.1110011.546509.42580K562SUPV3L1
SQSTM1ENSG00000161011.152730.122703394.37600-0.314203.628402.68920K562SYNCRIP
SQSTM1ENSG00000161011.153010.688501790.936200.749309.130307.74260K562TARDBP
SQSTM1ENSG00000161011.152463.003101383.812600.831707.639205.05170K562TFIP11
SQSTM1ENSG00000161011.152660.766501727.622100.6230010.890409.14890K562TIA1
SQSTM1ENSG00000161011.152479.288201611.208100.621707.163405.60130K562TIAL1
SQSTM1ENSG00000161011.152272.619701695.868800.422204.384102.95490K562TRA2A
SQSTM1ENSG00000161011.153647.823402443.820000.577806.775604.47680K562TRIP6
SQSTM1ENSG00000161011.155464.041703777.137100.5326015.8440012.92530K562TROVE2
SQSTM1ENSG00000161011.157026.790905164.716600.444105.701803.73510K562UBE2L3
SQSTM1ENSG00000161011.153639.008101606.466801.1796018.0962015.51960K562UCHL5
SQSTM1ENSG00000161011.155370.587102878.073800.8999044.4829042.04370K562UPF1
SQSTM1ENSG00000161011.154806.446403193.331600.589803.338801.87350K562UTP18
SQSTM1ENSG00000161011.154874.922602742.180600.8300011.988309.72030K562UTP3
SQSTM1ENSG00000161011.153716.046702462.683500.5934010.197308.47890K562WDR3
SQSTM1ENSG00000161011.153049.768402560.859300.252004.032503.02480K562WDR43
SQSTM1ENSG00000161011.156753.533204235.052300.6732012.4344010.45690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SQSTM1 is not available on ENCORE database.





6 RBPs can affect the splicing of SQSTM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESQSTM1ENSG00000161011.15chr5+179252145179252226179251181179251323179260031179260246-0.060000.001900.03524excludedK562SF3B4
SESQSTM1ENSG00000161011.15chr5+179252145179252226179251181179251323179260031179260246-0.060000.000000.00027excludedK562PRPF8
SESQSTM1ENSG00000161011.15chr5+179252145179252226179251181179251323179260031179260246-0.051000.000020.00133excludedK562AKAP8L
SESQSTM1ENSG00000161011.15chr5+179252145179252333179251181179251323179260031179260386-0.077000.000260.01848excludedK562EFTUD2
SESQSTM1ENSG00000161011.15chr5+179252145179252226179251181179251323179260031179260246-0.069000.000000.00002excludedK562RBM15
MXESQSTM1ENSG00000161011.15chr5+179238573179238682179249957179250053179233387179233591179250857179251087-0.084000.000000.000532includedHepG2LARP4
MXESQSTM1ENSG00000161011.15chr5+179249957179250053179250857179251087179238573179238682179251181179251323-0.128000.001880.037522includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SQSTM1 is not avaliable on ENCORE database.