SCN9A

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCN9A	ENSG00000169432.15	0.00	0.00	0.00	ENCSR000AEF
HepG2	SCN9A	ENSG00000169432.15	3.88	6.22	5.05	ENCSR985KAT
K562	SCN9A	ENSG00000169432.15	3.24	4.28	3.76	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCN9A is not avaliable on ENCORE database.

Proteins bound to RNA

SCN9A RNA is bound by 25 proteins.

eCLIP assay for SCN9A is not avaliable on ENCORE database.

25 proteins are bound to SCN9A RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	167055121	167055163	-	3'-UTR,intron-Distal,intron-Proximal	3.77945	3.00640	HepG2	ZC3H11A
chr2	167051712	167051769	-	3'-UTR,intron-Distal	4.95318	4.66971	HepG2	ZC3H11A
chr2	167232257	167232319	-	5'-UTR,intron-Distal	3.14495	3.90804	HepG2	GRWD1
chr2	167232207	167232247	-	5'-UTR,intron-Distal	3.70219	9.67260	HepG2	BCLAF1
chr2	167232252	167232404	-	5'-UTR,intron-Distal	3.09623	8.02182	HepG2	NCBP2
chr2	167232319	167232404	-	5'-UTR,intron-Distal	3.51755	5.59833	HepG2	GRWD1
chr2	167168219	167168276	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.67722	19.83693	HepG2	BCLAF1
chr2	167232169	167232250	-	5'-UTR,intron-Distal	3.73026	6.86197	HepG2	PRPF8
chr2	167168149	167168307	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.35483	5.75540	HepG2	ZNF800
chr2	167232297	167232410	-	5'-UTR,intron-Distal	3.93252	34.56307	HepG2	DDX3X
chr2	167232410	167232455	-	5'-UTR,intron-Distal	4.66991	6.05264	HepG2	DDX3X
chr2	167168295	167168312	-	5'-UTR,intron-Distal,intron-Proximal	3.99543	9.08790	HepG2	BCLAF1
chr2	167129364	167129434	-	CDS,intron-Distal,intron-Proximal	4.14807	25.74098	HepG2	U2AF2
chr2	167142842	167142914	-	CDS,intron-Distal,intron-Proximal	3.10594	5.24091	HepG2	AGGF1
chr2	167137055	167137106	-	CDS,intron-Distal,intron-Proximal	3.69118	4.22917	HepG2	PPIG
chr2	167159743	167159815	-	CDS,intron-Distal,intron-Proximal	3.18686	27.27642	HepG2	BCLAF1
chr2	167162352	167162397	-	CDS,intron-Distal	3.48033	13.63814	HepG2	BCLAF1
chr2	167144946	167145000	-	CDS,intron-Distal,intron-Proximal	4.96961	20.44120	HepG2	BCLAF1
chr2	167060954	167060982	-	CDS,intron-Distal,intron-Proximal	3.43340	12.07758	HepG2	AQR
chr2	167089927	167089953	-	CDS,intron-Distal	4.05113	7.65975	HepG2	BCLAF1
chr2	167128930	167129020	-	CDS,intron-Distal	3.29170	10.62489	HepG2	HLTF
chr2	167141027	167141161	-	CDS,intron-Distal	3.13876	3.14231	HepG2	EIF3H
chr2	167060872	167060908	-	CDS,intron-Distal	4.22904	10.26109	HepG2	BCLAF1
chr2	167142845	167142867	-	CDS,intron-Distal,intron-Proximal	3.68260	20.48804	HepG2	BCLAF1
chr2	167141222	167141276	-	CDS,intron-Distal	4.98592	4.07690	HepG2	ZNF800
chr2	167163031	167163107	-	CDS,intron-Distal,intron-Proximal	3.95073	3.89440	HepG2	ZNF800
chr2	167060942	167060954	-	CDS,intron-Distal	3.11520	12.69639	HepG2	AQR
chr2	167163020	167163066	-	CDS,intron-Distal	3.74801	19.61177	HepG2	BCLAF1
chr2	167099122	167099167	-	CDS,intron-Distal,intron-Proximal	4.10256	5.92041	HepG2	EIF3H
chr2	167141110	167141207	-	CDS,intron-Distal	3.69344	4.00697	HepG2	ZNF800
chr2	167142845	167142862	-	CDS,intron-Distal,intron-Proximal	3.35752	5.82118	HepG2	HLTF
chr2	167163066	167163108	-	CDS,intron-Distal,intron-Proximal	3.58675	15.25977	HepG2	BCLAF1
chr2	167141212	167141277	-	CDS,intron-Distal	3.55817	21.55915	HepG2	BCLAF1
chr2	167145083	167145100	-	CDS,intron-Distal	4.52340	8.85766	HepG2	BCLAF1
chr2	167159673	167159743	-	CDS,intron-Distal	4.51012	34.12983	HepG2	BCLAF1
chr2	167168007	167168124	-	CDS,intron-Distal,intron-Proximal	3.89683	8.57761	HepG2	ZNF800
chr2	167134746	167134823	-	CDS,intron-Distal	4.31478	25.55450	HepG2	BCLAF1
chr2	167089922	167089955	-	CDS,intron-Distal	3.60535	4.42924	HepG2	HLTF
chr2	167137011	167137047	-	CDS,intron-Distal	3.66530	7.74581	HepG2	BCLAF1
chr2	167159710	167159815	-	CDS,intron-Distal,intron-Proximal	5.00624	12.21273	HepG2	EIF3H
chr2	167129158	167129216	-	CDS,intron-Distal	5.39163	12.44336	HepG2	BCLAF1
chr2	167151110	167151162	-	CDS,intron-Distal	3.59044	14.17692	HepG2	BCLAF1
chr2	167141122	167141207	-	CDS,intron-Distal	3.02212	5.93420	HepG2	GRWD1
chr2	167149857	167149881	-	CDS,intron-Distal	4.92758	9.74753	HepG2	BCLAF1
chr2	167143053	167143097	-	CDS,intron-Distal	4.23872	7.83567	HepG2	BCLAF1
chr2	167159601	167159645	-	CDS,intron-Distal	4.49779	10.68105	HepG2	BCLAF1
chr2	167129032	167129080	-	CDS,intron-Distal	3.17666	8.50526	HepG2	BCLAF1
chr2	167142862	167142928	-	CDS,intron-Distal	3.14119	8.04763	HepG2	HLTF
chr2	167083088	167083137	-	CDS,intron-Distal	3.56588	11.19372	HepG2	BCLAF1
chr2	167134649	167134708	-	CDS,intron-Distal,intron-Proximal	4.01757	22.57466	HepG2	BCLAF1
chr2	167128958	167129032	-	CDS,intron-Distal	3.67314	22.46163	HepG2	BCLAF1
chr2	167168009	167168154	-	CDS,intron-Distal	3.62138	11.11753	HepG2	PPIG
chr2	167163529	167163602	-	CDS,intron-Distal,intron-Proximal	3.67903	6.17334	HepG2	U2AF2
chr2	167162258	167162354	-	CDS,intron-Distal,intron-Proximal	4.66280	8.78209	HepG2	PRPF8
chr2	167141313	167141333	-	CDS,intron-Distal	3.40432	10.62277	HepG2	BCLAF1
chr2	167060924	167060955	-	CDS,intron-Distal	6.11338	12.09921	HepG2	BCLAF1
chr2	167168147	167168171	-	CDS,intron-Distal	4.27600	21.75865	HepG2	BCLAF1
chr2	167094667	167094758	-	CDS,intron-Distal	5.00866	23.13449	HepG2	BCLAF1
chr2	167159735	167159819	-	CDS,intron-Distal,intron-Proximal	3.55112	6.28230	HepG2	PPIG
chr2	167138208	167138267	-	CDS,intron-Distal,intron-Proximal	4.55410	18.39355	HepG2	BCLAF1
chr2	167138188	167138208	-	CDS,intron-Distal,intron-Proximal	5.48033	16.53902	HepG2	BCLAF1
chr2	167129368	167129433	-	CDS,intron-Distal,intron-Proximal	3.48545	7.59599	HepG2	U2AF1
chr2	167136887	167136931	-	CDS,intron-Distal	3.57495	8.84415	HepG2	BCLAF1
chr2	167137060	167137105	-	CDS,intron-Distal	5.21358	20.06099	HepG2	BCLAF1
chr2	167129105	167129135	-	CDS,intron-Distal	4.07346	8.25092	HepG2	BCLAF1
chr2	167142847	167142943	-	CDS,intron-Distal	3.14437	7.04572	HepG2	GRWD1
chr2	167168013	167168052	-	CDS,intron-Distal	5.85571	21.13696	HepG2	BCLAF1
chr2	167168171	167168219	-	CDS,intron-Distal	3.74762	25.13254	HepG2	BCLAF1
chr2	167136957	167136980	-	CDS,intron-Distal	5.66530	10.24913	HepG2	BCLAF1
chr2	167163485	167163510	-	CDS,intron-Distal	3.45396	7.74581	HepG2	BCLAF1
chr2	167128908	167128958	-	CDS,intron-Distal,intron-Proximal	3.15817	9.51220	HepG2	BCLAF1
chr2	167145031	167145083	-	CDS,intron-Distal	3.85544	16.63901	HepG2	BCLAF1
chr2	167163466	167163478	-	CDS,intron-Distal,intron-Proximal	3.45310	7.61291	HepG2	BCLAF1
chr2	167168015	167168092	-	CDS,intron-Distal	4.09597	9.49961	HepG2	GRWD1
chr2	167142844	167142943	-	CDS,intron-Distal,intron-Proximal	3.24019	9.46622	HepG2	FXR2
chr2	167084180	167084222	-	CDS,intron-Distal	4.73872	11.55759	HepG2	BCLAF1
chr2	167141141	167141211	-	CDS,intron-Distal	3.41325	11.87906	HepG2	BCLAF1
chr2	167168052	167168090	-	CDS,intron-Distal	4.98710	28.79642	HepG2	BCLAF1
chr2	167142842	167142918	-	CDS,intron-Distal,intron-Proximal	4.22687	10.49655	HepG2	ZNF800
chr2	167142867	167142962	-	CDS,intron-Distal	4.92791	52.72239	HepG2	BCLAF1
chr2	167099147	167099163	-	CDS,intron-Distal	3.50947	8.57930	HepG2	BCLAF1
chr2	167143107	167143133	-	CDS,intron-Distal	4.93056	13.76815	HepG2	BCLAF1
chr2	167141277	167141313	-	CDS,intron-Distal	3.47755	13.09340	HepG2	BCLAF1
chr2	167162296	167162351	-	CDS,intron-Distal,intron-Proximal	3.65376	19.65384	HepG2	BCLAF1
chr2	167108322	167108346	-	CDS,intron-Distal	3.61722	7.42278	HepG2	BCLAF1
chr2	167060871	167060933	-	CDS,intron-Distal	3.29704	4.51003	HepG2	PPIG
chr2	167099128	167099147	-	CDS,intron-Distal	3.43844	7.74581	HepG2	BCLAF1
chr2	167099015	167099041	-	CDS,intron-Distal	4.00933	9.93259	HepG2	BCLAF1
chr2	167162231	167162369	-	CDS,intron-Distal,intron-Proximal	4.17691	3.12843	K562	PRPF8
chr2	167168090	167168147	-	CDS,intron-Distal	5.12255	39.34959	HepG2	BCLAF1
chr2	167229833	167229919	-	intron-Distal	3.05512	5.98214	HepG2	HNRNPL
chr2	167232112	167232194	-	intron-Distal	4.69525	15.91770	HepG2	TIAL1
chr2	167071355	167071412	-	intron-Distal	4.04233	11.16061	HepG2	SUGP2
chr2	167221211	167221306	-	intron-Distal	4.03969	15.72469	HepG2	HNRNPL
chr2	167070028	167070079	-	intron-Distal	3.94909	4.63118	HepG2	HNRNPM
chr2	167069082	167069225	-	intron-Distal	3.16961	3.33745	HepG2	HNRNPM
chr2	167069731	167069781	-	intron-Distal	3.29032	6.84019	HepG2	SUGP2
chr2	167122526	167122562	-	intron-Distal	3.39783	3.08145	HepG2	HLTF
chr2	167224509	167224592	-	intron-Distal	4.32486	6.50090	HepG2	HNRNPL
chr2	167151694	167151815	-	intron-Distal	3.44016	11.28725	HepG2	HNRNPL
chr2	167126422	167126472	-	intron-Distal	3.41510	5.35398	HepG2	QKI
chr2	167228582	167228654	-	intron-Distal	3.92959	17.69696	HepG2	HNRNPL
chr2	167158779	167158822	-	intron-Distal	3.54037	3.95921	HepG2	U2AF2
chr2	167221923	167222027	-	intron-Distal	3.97092	8.03418	HepG2	QKI
chr2	167072876	167072896	-	intron-Distal	4.66215	6.07481	HepG2	SUGP2
chr2	167101886	167101997	-	intron-Distal	4.16482	4.78196	HepG2	PTBP1
chr2	167116781	167116845	-	intron-Distal	3.33174	5.39379	HepG2	HNRNPL
chr2	167070801	167070841	-	intron-Distal	3.13224	8.82614	HepG2	SUGP2
chr2	167068238	167068270	-	intron-Distal	3.71989	5.08575	HepG2	SUGP2
chr2	167156212	167156272	-	intron-Distal	3.72735	3.25346	HepG2	SAFB
chr2	167070484	167070510	-	intron-Distal	3.63381	4.60009	HepG2	SUGP2
chr2	167069109	167069179	-	intron-Distal	4.94683	13.34139	HepG2	SUGP2
chr2	167069904	167069965	-	intron-Distal	3.24006	5.28181	HepG2	MATR3
chr2	167077026	167077093	-	intron-Distal	3.34099	7.93215	HepG2	SUGP2
chr2	167074207	167074287	-	intron-Distal	4.24551	9.27432	HepG2	QKI
chr2	167232095	167232187	-	intron-Distal	3.83056	11.55560	K562	TIA1
chr2	167065804	167065856	-	intron-Distal	3.01231	4.61989	HepG2	SUGP2
chr2	167065487	167065558	-	intron-Distal	4.35795	3.96879	HepG2	MATR3
chr2	167069636	167069692	-	intron-Distal	3.99315	3.39827	HepG2	MATR3
chr2	167070308	167070405	-	intron-Distal	3.46279	5.54272	HepG2	MATR3
chr2	167126800	167126884	-	intron-Distal	3.79401	4.00486	HepG2	HNRNPL
chr2	167073959	167074013	-	intron-Distal	5.04065	8.31472	HepG2	SUGP2
chr2	167139268	167139337	-	intron-Distal	3.23277	4.51544	HepG2	HNRNPL
chr2	167107869	167107928	-	intron-Distal	4.18227	4.17759	HepG2	QKI
chr2	167128651	167128715	-	intron-Distal	3.15678	3.53967	HepG2	TIAL1
chr2	167124272	167124326	-	intron-Distal	3.92149	5.63010	HepG2	HLTF
chr2	167071741	167071809	-	intron-Distal	3.05354	5.92841	HepG2	SUGP2
chr2	167221641	167221747	-	intron-Distal	4.20088	5.30252	HepG2	KHSRP
chr2	167070295	167070405	-	intron-Distal	3.79914	22.31031	HepG2	SUGP2
chr2	167073903	167073950	-	intron-Distal	3.35222	5.82512	HepG2	SUGP2
chr2	167071675	167071723	-	intron-Distal	3.46839	7.59467	HepG2	SUGP2
chr2	167124972	167125041	-	intron-Distal	3.29480	3.64762	HepG2	QKI
chr2	167124411	167124503	-	intron-Distal	4.11573	10.25789	HepG2	HLTF
chr2	167069072	167069170	-	intron-Distal	3.07319	5.08775	HepG2	MATR3
chr2	167132290	167132417	-	intron-Distal	3.13583	9.95632	HepG2	HNRNPL
chr2	167069902	167069957	-	intron-Distal	3.38654	8.83168	HepG2	SUGP2
chr2	167151244	167151328	-	intron-Distal,intron-Proximal	5.22030	5.60990	HepG2	KHSRP
chr2	167151328	167151379	-	intron-Distal	3.56325	3.29213	HepG2	KHSRP
chr2	167230054	167230137	-	intron-Distal	3.08072	3.44626	HepG2	PTBP1
chr2	167151615	167151694	-	intron-Distal	3.39797	5.17145	HepG2	HNRNPL
chr2	167070696	167070749	-	intron-Distal	4.08522	11.72212	HepG2	SUGP2
chr2	167117104	167117202	-	intron-Distal	3.13112	3.54383	HepG2	HNRNPL
chr2	167124366	167124468	-	intron-Distal	3.26938	3.32578	HepG2	SAFB
chr2	167070035	167070081	-	intron-Distal	4.09509	5.95721	HepG2	MATR3
chr2	167071412	167071518	-	intron-Distal	3.62632	15.86509	HepG2	SUGP2
chr2	167122997	167123073	-	intron-Distal	3.36577	6.13735	HepG2	HLTF
chr2	167069569	167069662	-	intron-Distal	3.83606	7.04020	HepG2	PTBP1
chr2	167071655	167071730	-	intron-Distal	3.70663	7.72741	HepG2	MATR3
chr2	167118861	167118927	-	intron-Distal	4.15157	3.35169	HepG2	U2AF2
chr2	167072538	167072581	-	intron-Distal	3.56841	4.35402	HepG2	SUGP2
chr2	167070224	167070295	-	intron-Distal	3.90686	12.87332	HepG2	SUGP2
chr2	167074164	167074207	-	intron-Distal	3.17284	3.12625	HepG2	QKI
chr2	167068976	167069143	-	intron-Distal	4.04770	3.06150	K562	KHSRP
chr2	167224568	167224658	-	intron-Distal	5.04605	5.20135	HepG2	QKI
chr2	167069010	167069072	-	intron-Distal	3.80479	11.16684	HepG2	SUGP2
chr2	167074547	167074605	-	intron-Distal	3.19808	7.56541	HepG2	SUGP2
chr2	167069072	167069109	-	intron-Distal	3.94373	8.83534	HepG2	SUGP2
chr2	167090069	167090158	-	intron-Distal,intron-Proximal	3.39264	3.55754	HepG2	U2AF2
chr2	167070841	167070923	-	intron-Distal	3.68935	16.19362	HepG2	SUGP2
chr2	167071616	167071675	-	intron-Distal	3.97524	10.71224	HepG2	SUGP2
chr2	167221597	167221762	-	intron-Distal	3.61751	4.30679	K562	KHSRP
chr2	167124355	167124411	-	intron-Distal	4.08377	10.02145	HepG2	HLTF
chr2	167116860	167116927	-	intron-Distal	3.97016	3.27714	HepG2	HNRNPL
chr2	167069559	167069636	-	intron-Distal	4.31397	8.92701	HepG2	MATR3
chr2	167065715	167065804	-	intron-Distal	3.31601	8.97985	HepG2	SUGP2
chr2	167069290	167069346	-	intron-Distal	4.02992	3.68462	HepG2	MATR3
chr2	167071730	167071834	-	intron-Distal	3.31363	6.03672	HepG2	MATR3
chr2	167080366	167080410	-	intron-Distal	3.57972	7.92375	HepG2	HNRNPL
chr2	167065952	167066045	-	intron-Distal	3.28564	5.58751	HepG2	MATR3
chr2	167071888	167071952	-	intron-Distal	3.00135	3.85511	HepG2	MATR3
chr2	167176259	167176378	-	intron-Distal	4.21657	3.80778	HepG2	QKI
chr2	167232122	167232194	-	intron-Distal	4.46544	5.66749	HepG2	TIA1
chr2	167070120	167070195	-	intron-Distal	4.92964	15.04605	HepG2	SUGP2
chr2	167212875	167212956	-	intron-Distal	4.68694	6.23638	HepG2	QKI
chr2	167181338	167181431	-	intron-Distal	4.37080	4.05848	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SCN9A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCN9A is not available on ENCORE database.
149 RBPs can affect the levels of SCN9A.

The Knockdown/knockout RNA-Seq assay for SCN9A is not available on ENCORE database.

149 RBPs can affect the gene expression of SCN9A :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCN9A	ENSG00000169432.10	1754.47040	1295.23640	0.43770	4.15410	2.86840	HepG2	AATF
SCN9A	ENSG00000169432.10	1461.67540	1816.82150	-0.31380	3.32200	2.66610	HepG2	ACO1
SCN9A	ENSG00000169432.10	2456.33570	3065.64990	-0.31970	1.98760	1.52750	HepG2	AKAP1
SCN9A	ENSG00000169432.10	2651.04190	3610.00010	-0.44540	3.58560	2.40590	HepG2	AKAP8
SCN9A	ENSG00000169432.10	3677.95730	1825.58990	1.01040	12.63580	11.15890	HepG2	AKAP8L
SCN9A	ENSG00000169432.10	3471.66790	2108.90480	0.71900	23.41650	21.77450	HepG2	AUH
SCN9A	ENSG00000169432.10	1208.32580	804.24350	0.58720	5.46070	4.23800	HepG2	BCLAF1
SCN9A	ENSG00000169432.10	667.94960	980.75460	-0.55420	5.28900	4.49530	HepG2	BOP1
SCN9A	ENSG00000169432.10	2051.93330	1417.35580	0.53370	7.94340	6.73270	HepG2	CALR
SCN9A	ENSG00000169432.10	1296.70280	2019.56020	-0.63920	5.42490	4.03840	HepG2	CCAR1
SCN9A	ENSG00000169432.10	1798.22590	2881.76110	-0.68040	4.11510	1.75940	HepG2	CDC40
SCN9A	ENSG00000169432.10	1112.98300	1816.70620	-0.70690	10.86000	9.71950	HepG2	CKAP4
SCN9A	ENSG00000169432.10	2699.57690	900.36990	1.58400	44.58510	42.29870	HepG2	CPSF6
SCN9A	ENSG00000169432.10	2257.26880	1665.90360	0.43820	9.31610	8.08230	HepG2	DAZAP1
SCN9A	ENSG00000169432.10	2699.11350	1429.89290	0.91650	16.62990	15.13500	HepG2	DDX21
SCN9A	ENSG00000169432.10	2094.72350	1398.55200	0.58270	8.65070	7.05860	HepG2	DDX24
SCN9A	ENSG00000169432.10	1252.10030	851.46720	0.55620	4.49560	2.90750	HepG2	DDX27
SCN9A	ENSG00000169432.10	952.10320	689.42620	0.46560	3.72060	2.09550	HepG2	DDX28
SCN9A	ENSG00000169432.10	3138.11880	1022.44150	1.61780	10.07190	8.28170	HepG2	DDX59
SCN9A	ENSG00000169432.10	2758.59180	1704.33490	0.69460	9.99010	8.21490	HepG2	DDX5
SCN9A	ENSG00000169432.10	1665.10800	1115.12980	0.57830	7.21830	5.70300	HepG2	DHX30
SCN9A	ENSG00000169432.10	3501.10800	2425.12910	0.52970	5.53540	4.71380	HepG2	EIF2S1
SCN9A	ENSG00000169432.10	3697.08780	2680.10570	0.46400	3.98520	3.22200	HepG2	EIF4A3
SCN9A	ENSG00000169432.10	2549.22070	1643.29730	0.63340	15.32340	13.67380	HepG2	EIF4G1
SCN9A	ENSG00000169432.10	2581.80740	1574.21290	0.71370	10.15230	8.64000	HepG2	EIF4G2
SCN9A	ENSG00000169432.10	2285.15340	1675.26730	0.44780	4.89380	3.48200	HepG2	ESF1
SCN9A	ENSG00000169432.10	3150.50260	2421.17170	0.37980	5.71560	4.90340	HepG2	ETF1
SCN9A	ENSG00000169432.10	2070.64440	1362.26520	0.60400	8.57180	6.77390	HepG2	FASTKD2
SCN9A	ENSG00000169432.10	1096.44200	1952.59470	-0.83260	9.71640	8.39170	HepG2	FIP1L1
SCN9A	ENSG00000169432.10	2387.39810	1420.84130	0.74860	13.21790	11.55760	HepG2	FUBP3
SCN9A	ENSG00000169432.10	1467.44520	2703.95380	-0.88180	13.64330	12.22910	HepG2	FXR1
SCN9A	ENSG00000169432.10	1687.37880	1020.59470	0.72530	7.84820	6.80550	HepG2	GPKOW
SCN9A	ENSG00000169432.10	1890.81980	1530.89060	0.30450	3.48900	2.45750	HepG2	HNRNPA2B1
SCN9A	ENSG00000169432.10	1844.02090	1298.34490	0.50610	5.67010	4.70580	HepG2	HNRNPC
SCN9A	ENSG00000169432.10	2052.49860	1024.79940	1.00190	33.35510	31.33510	HepG2	HNRNPF
SCN9A	ENSG00000169432.10	1468.06600	2539.78310	-0.79080	12.60820	11.22380	HepG2	HNRNPK
SCN9A	ENSG00000169432.10	2041.40200	1517.58770	0.42770	8.68620	7.55550	HepG2	HNRNPL
SCN9A	ENSG00000169432.10	2778.60830	973.97640	1.51230	38.60270	36.67090	HepG2	HNRNPLL
SCN9A	ENSG00000169432.10	844.85950	1347.42150	-0.67340	9.15770	7.59670	HepG2	HNRNPM
SCN9A	ENSG00000169432.10	1637.40520	1289.76320	0.34420	4.78350	4.00410	HepG2	HNRNPU
SCN9A	ENSG00000169432.10	1538.55840	1009.13060	0.60840	4.65580	3.73850	HepG2	IGF2BP1
SCN9A	ENSG00000169432.10	2033.15290	2549.76190	-0.32660	2.48330	1.83970	HepG2	IGF2BP2
SCN9A	ENSG00000169432.10	1536.19190	1317.45550	0.22150	2.71740	1.99080	HepG2	ILF2
SCN9A	ENSG00000169432.10	1543.36760	2132.09020	-0.46620	3.17060	2.27930	HepG2	LARP4
SCN9A	ENSG00000169432.10	1947.02450	1373.02560	0.50380	6.18150	4.39770	HepG2	LIN28B
SCN9A	ENSG00000169432.10	1770.70800	2704.89710	-0.61120	6.74680	5.73600	HepG2	MAGOH
SCN9A	ENSG00000169432.10	1946.68020	993.42700	0.97040	9.06930	7.28350	HepG2	MTPAP
SCN9A	ENSG00000169432.10	1690.48050	1182.07590	0.51600	6.05690	3.95940	HepG2	NIP7
SCN9A	ENSG00000169432.10	2041.38550	1651.89300	0.30530	3.00640	2.21200	HepG2	NOL12
SCN9A	ENSG00000169432.10	3639.72240	2479.57010	0.55360	5.93780	4.89210	HepG2	PABPC4
SCN9A	ENSG00000169432.10	1537.51740	1276.68220	0.26810	2.89490	2.03030	HepG2	PARN
SCN9A	ENSG00000169432.10	2771.73510	2367.51880	0.22730	2.93920	2.31680	HepG2	PCBP1
SCN9A	ENSG00000169432.10	1962.03020	1254.84260	0.64470	6.18660	3.80020	HepG2	PHF6
SCN9A	ENSG00000169432.10	1651.16920	1150.37090	0.52130	8.45310	7.21430	HepG2	PPIL4
SCN9A	ENSG00000169432.10	1371.81850	702.09420	0.96630	13.66510	12.06520	HepG2	PRPF8
SCN9A	ENSG00000169432.10	2992.57000	2409.07830	0.31280	2.40460	1.88850	HepG2	PTBP1
SCN9A	ENSG00000169432.10	1190.26400	1576.80590	-0.40570	4.23430	3.51490	HepG2	PUF60
SCN9A	ENSG00000169432.10	1449.85320	1673.76650	-0.20720	2.81840	2.22110	HepG2	PUM1
SCN9A	ENSG00000169432.10	2422.24460	1850.59150	0.38830	6.47960	5.60750	HepG2	PUS1
SCN9A	ENSG00000169432.10	4347.54400	2609.00730	0.73660	19.74040	18.28650	HepG2	QKI
SCN9A	ENSG00000169432.10	1402.04930	2023.67930	-0.52940	6.25580	5.55250	HepG2	RBM22
SCN9A	ENSG00000169432.10	2598.77560	1723.53710	0.59240	4.01930	1.52990	HepG2	RBM34
SCN9A	ENSG00000169432.10	3920.43930	1698.41090	1.20670	14.79120	12.81550	HepG2	RPS10
SCN9A	ENSG00000169432.10	626.38060	1225.08030	-0.96780	4.36090	3.60630	HepG2	RPS19
SCN9A	ENSG00000169432.10	987.74500	694.53170	0.50800	3.82160	2.91550	HepG2	RRP9
SCN9A	ENSG00000169432.10	3474.36000	1880.89620	0.88520	8.24180	5.70520	HepG2	RTF1
SCN9A	ENSG00000169432.10	1577.57980	1148.60880	0.45770	8.44670	7.41140	HepG2	SAFB2
SCN9A	ENSG00000169432.10	3721.16230	2396.48990	0.63470	4.03840	2.46770	HepG2	SART3
SCN9A	ENSG00000169432.10	1094.24720	2333.10680	-1.09230	3.76350	2.13340	HepG2	SF1
SCN9A	ENSG00000169432.10	1946.93530	964.01840	1.01400	15.81600	14.27380	HepG2	SF3B1
SCN9A	ENSG00000169432.10	1657.73610	2508.09080	-0.59740	14.61100	13.41640	HepG2	SF3B4
SCN9A	ENSG00000169432.10	1168.70180	2261.53490	-0.95240	2.75680	1.31670	HepG2	SFPQ
SCN9A	ENSG00000169432.10	2543.05880	1511.74150	0.75030	26.86970	25.12200	HepG2	SLBP
SCN9A	ENSG00000169432.10	946.66030	1339.50160	-0.50080	9.69910	8.61060	HepG2	SMN1
SCN9A	ENSG00000169432.10	2357.31210	1681.29470	0.48750	3.35830	1.59630	HepG2	SND1
SCN9A	ENSG00000169432.10	2612.30430	1072.64880	1.28400	10.84300	9.30570	HepG2	SNRNP70
SCN9A	ENSG00000169432.10	6791.41650	2285.72040	1.57100	144.89620	142.69680	HepG2	SRFBP1
SCN9A	ENSG00000169432.10	1270.56600	866.71650	0.55170	4.92560	2.86540	HepG2	SRP68
SCN9A	ENSG00000169432.10	2199.55850	1556.76720	0.49860	9.67980	8.60320	HepG2	SRSF5
SCN9A	ENSG00000169432.10	1489.06290	1006.84640	0.56450	10.10430	8.91960	HepG2	SRSF7
SCN9A	ENSG00000169432.10	3195.87810	2129.85250	0.58540	17.63490	16.46210	HepG2	SRSF9
SCN9A	ENSG00000169432.10	4477.73650	1984.63220	1.17380	69.85210	68.15650	HepG2	SSB
SCN9A	ENSG00000169432.10	2316.77540	1304.51620	0.82850	9.34140	7.25530	HepG2	STAU1
SCN9A	ENSG00000169432.10	2929.68170	1616.39490	0.85790	6.03660	4.28030	HepG2	SUB1
SCN9A	ENSG00000169432.10	1349.11780	1770.55790	-0.39220	7.45990	6.51890	HepG2	SUCLG1
SCN9A	ENSG00000169432.10	3078.34780	905.86860	1.76470	32.77190	30.93430	HepG2	SUPV3L1
SCN9A	ENSG00000169432.10	2715.98870	949.44390	1.51620	42.70220	40.52900	HepG2	TARDBP
SCN9A	ENSG00000169432.10	1131.73360	607.19940	0.89820	10.83700	9.12360	HepG2	TFIP11
SCN9A	ENSG00000169432.10	2767.55970	2162.16690	0.35600	4.22500	3.20080	HepG2	TIA1
SCN9A	ENSG00000169432.10	2104.18600	1540.33770	0.44990	5.23100	3.98970	HepG2	TUFM
SCN9A	ENSG00000169432.10	2098.97140	1670.51240	0.32930	2.66980	2.05170	HepG2	U2AF1
SCN9A	ENSG00000169432.10	2851.42920	1630.33450	0.80640	5.12930	3.96910	HepG2	UBE2L3
SCN9A	ENSG00000169432.10	356.83310	535.15520	-0.58470	3.80670	2.91690	HepG2	UCHL5
SCN9A	ENSG00000169432.10	1513.50550	2059.29890	-0.44430	6.63700	5.63110	HepG2	UPF1
SCN9A	ENSG00000169432.10	1248.42990	1988.16320	-0.67130	16.82150	15.52930	HepG2	UTP3
SCN9A	ENSG00000169432.10	2617.87330	1700.25720	0.62250	4.61910	2.97440	HepG2	XRCC5
SCN9A	ENSG00000169432.10	2986.20150	1282.60960	1.21910	71.23650	68.79560	HepG2	ZC3H8
SCN9A	ENSG00000169432.10	2559.58260	2264.82630	0.17640	2.13950	1.64080	HepG2	ZNF622
SCN9A	ENSG00000169432.10	3537.45330	1727.45500	1.03400	13.08630	10.24070	HepG2	ZRANB2
SCN9A	ENSG00000169432.10	29.96450	90.71180	-1.59800	4.89490	2.58440	K562	ADAR
SCN9A	ENSG00000169432.10	250.98330	429.86060	-0.77630	5.26250	4.52060	K562	AGGF1
SCN9A	ENSG00000169432.10	272.23590	472.28220	-0.79480	6.18920	4.57850	K562	AKAP8
SCN9A	ENSG00000169432.10	256.42470	447.27230	-0.80260	5.82520	4.85550	K562	AKAP8L
SCN9A	ENSG00000169432.10	499.14400	313.25170	0.67200	5.41660	3.59790	K562	APOBEC3C
SCN9A	ENSG00000169432.10	93.32060	320.08290	-1.77820	15.47830	14.24280	K562	AQR
SCN9A	ENSG00000169432.10	282.49050	469.26400	-0.73220	4.99110	3.72580	K562	ATP5C1
SCN9A	ENSG00000169432.10	587.63870	379.02690	0.63250	5.62330	2.78740	K562	AUH
SCN9A	ENSG00000169432.10	107.92600	175.18340	-0.69880	3.12780	2.11060	K562	BCLAF1
SCN9A	ENSG00000169432.10	374.98960	204.14910	0.87710	6.16430	4.85160	K562	BOP1
SCN9A	ENSG00000169432.10	189.68600	295.65680	-0.64030	3.21190	1.64110	K562	CKAP4
SCN9A	ENSG00000169432.10	397.88490	279.31250	0.51040	3.58870	2.32130	K562	CPEB4
SCN9A	ENSG00000169432.10	200.40720	97.02050	1.04650	5.49410	2.96310	K562	YBX3
SCN9A	ENSG00000169432.10	78.69270	132.90270	-0.75610	2.58210	1.56640	K562	CSTF2
SCN9A	ENSG00000169432.10	219.62740	436.52580	-0.99100	9.61060	7.84070	K562	CELF1
SCN9A	ENSG00000169432.10	249.55800	93.58830	1.41490	8.82000	5.67700	K562	DDX1
SCN9A	ENSG00000169432.10	297.60700	153.61520	0.95400	8.74630	6.41470	K562	DDX27
SCN9A	ENSG00000169432.10	334.91510	167.70350	0.99780	8.64680	6.70190	K562	DDX3X
SCN9A	ENSG00000169432.10	729.55720	288.97790	1.33600	28.59750	26.71340	K562	DDX47
SCN9A	ENSG00000169432.10	104.46550	170.02290	-0.70270	3.30900	1.84590	K562	DDX6
SCN9A	ENSG00000169432.10	311.55080	481.40440	-0.62780	3.36950	2.39020	K562	DKC1
SCN9A	ENSG00000169432.10	321.84520	176.54770	0.86620	3.91740	1.33770	K562	AGO1
SCN9A	ENSG00000169432.10	1887.79830	266.01980	2.82700	156.73510	153.72040	K562	EIF2S2
SCN9A	ENSG00000169432.10	222.04150	90.35030	1.29710	6.05060	4.52930	K562	EIF3A
SCN9A	ENSG00000169432.10	400.02960	169.75740	1.23650	10.61910	8.41490	K562	EIF3D
SCN9A	ENSG00000169432.10	241.41480	96.97840	1.31570	3.87500	1.48650	K562	EIF4G1
SCN9A	ENSG00000169432.10	456.45710	355.00960	0.36250	2.27610	1.42010	K562	EIF4G2
SCN9A	ENSG00000169432.10	78.62680	190.76250	-1.27870	8.68300	6.43820	K562	EXOSC5
SCN9A	ENSG00000169432.10	320.13770	141.09180	1.18200	8.93920	6.15070	K562	FAM120A
SCN9A	ENSG00000169432.10	106.83690	255.15860	-1.25600	9.47490	7.79810	K562	FIP1L1
SCN9A	ENSG00000169432.10	448.95710	131.68030	1.76940	22.16620	18.88290	K562	FKBP4
SCN9A	ENSG00000169432.10	604.39630	220.86300	1.45220	19.86570	17.51210	K562	FMR1
SCN9A	ENSG00000169432.10	350.70760	187.20170	0.90560	6.28280	4.84800	K562	FTO
SCN9A	ENSG00000169432.10	166.57670	311.18610	-0.90160	4.09300	1.90800	K562	HNRNPA0
SCN9A	ENSG00000169432.10	287.59460	151.69720	0.92270	6.15190	5.29640	K562	HNRNPC
SCN9A	ENSG00000169432.10	221.89580	135.46000	0.71190	3.47250	2.18270	K562	HNRNPF
SCN9A	ENSG00000169432.10	149.61140	255.35250	-0.77130	4.00120	2.47880	K562	HNRNPK
SCN9A	ENSG00000169432.10	133.89970	261.16880	-0.96380	6.75540	5.02860	K562	HNRNPL
SCN9A	ENSG00000169432.10	1113.26900	345.96690	1.68600	35.44990	33.04760	K562	HSPD1
SCN9A	ENSG00000169432.10	271.67880	474.72770	-0.80520	5.99220	4.67310	K562	KIF1C
SCN9A	ENSG00000169432.10	81.78600	176.96380	-1.11350	4.68830	3.43340	K562	KRR1
SCN9A	ENSG00000169432.10	258.68550	454.38260	-0.81270	5.51510	3.81960	K562	MAK16
SCN9A	ENSG00000169432.10	172.93460	268.12840	-0.63270	3.32710	2.30370	K562	MATR3
SCN9A	ENSG00000169432.10	296.28890	203.45470	0.54220	3.15280	2.29050	K562	MTPAP
SCN9A	ENSG00000169432.10	172.43260	372.75260	-1.11220	7.58530	5.84230	K562	NAA15
SCN9A	ENSG00000169432.10	296.69950	174.96010	0.76190	4.96300	3.31160	K562	NCBP2
SCN9A	ENSG00000169432.10	106.14390	226.06980	-1.09070	8.13160	6.94840	K562	NSUN2
SCN9A	ENSG00000169432.10	112.60420	243.34160	-1.11170	4.20630	2.92060	K562	PABPN1
SCN9A	ENSG00000169432.10	146.51590	242.64860	-0.72780	3.59190	2.64360	K562	PCBP3
SCN9A	ENSG00000169432.10	117.91210	186.11450	-0.65850	2.71580	1.92260	K562	POLR2G
SCN9A	ENSG00000169432.10	416.73440	196.92790	1.08140	6.12070	3.55570	K562	PRPF6
SCN9A	ENSG00000169432.10	1169.78630	260.99180	2.16410	63.98180	60.90860	K562	PTBP1
SCN9A	ENSG00000169432.10	1388.08160	403.67510	1.78170	60.20350	56.72990	K562	PUM2
SCN9A	ENSG00000169432.10	431.47390	175.95460	1.29400	9.03590	6.44620	K562	RAVER1
SCN9A	ENSG00000169432.10	173.32430	432.21140	-1.31830	11.22440	10.05070	K562	RBM15
SCN9A	ENSG00000169432.10	229.43660	336.20470	-0.55120	3.08530	1.38740	K562	RBM17
SCN9A	ENSG00000169432.10	119.81850	250.36130	-1.06320	5.81620	4.53930	K562	RBM22
SCN9A	ENSG00000169432.10	629.11990	263.44150	1.25580	17.00320	14.39720	K562	NELFE
SCN9A	ENSG00000169432.10	450.40380	157.15190	1.51900	15.65420	13.68890	K562	RPS19
SCN9A	ENSG00000169432.10	198.68260	124.12010	0.67860	2.41700	1.48850	K562	RPS3
SCN9A	ENSG00000169432.10	136.51710	248.90980	-0.86650	4.31690	2.05710	K562	SAFB2
SCN9A	ENSG00000169432.10	66.75340	132.02070	-0.98390	3.30840	1.58380	K562	SERBP1
SCN9A	ENSG00000169432.10	449.89960	222.57820	1.01520	3.58170	2.15410	K562	SF1
SCN9A	ENSG00000169432.10	93.66280	191.78180	-1.03390	6.41890	5.07820	K562	SF3B4
SCN9A	ENSG00000169432.10	345.24570	258.96980	0.41470	2.01560	1.40560	K562	TARDBP
SCN9A	ENSG00000169432.10	77.73100	138.97130	-0.83820	3.09010	2.07970	K562	TRIM56
SCN9A	ENSG00000169432.10	184.51670	264.49400	-0.51950	2.71160	1.45600	K562	TROVE2
SCN9A	ENSG00000169432.10	606.34490	436.72910	0.47330	3.04210	1.56340	K562	UBE2L3
SCN9A	ENSG00000169432.10	659.18720	239.70560	1.45930	30.05630	27.98910	K562	UPF1
SCN9A	ENSG00000169432.10	93.91330	197.27760	-1.07080	6.95940	4.37360	K562	UPF2
SCN9A	ENSG00000169432.10	267.07840	449.73550	-0.75180	3.47760	1.97100	K562	UTP18
SCN9A	ENSG00000169432.10	493.68030	248.70600	0.98900	8.45590	6.45720	K562	UTP3
SCN9A	ENSG00000169432.10	381.87760	213.27890	0.84030	8.72780	7.30940	K562	WDR43
SCN9A	ENSG00000169432.10	699.98600	260.36300	1.42670	9.29710	6.21450	K562	XPO5
SCN9A	ENSG00000169432.10	338.00940	185.47760	0.86570	3.97170	1.99410	K562	XRCC6
SCN9A	ENSG00000169432.10	252.32440	360.61420	-0.51520	2.30420	1.52830	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCN9A is not available on ENCORE database.

9 RBPs can affect the splicing of SCN9A :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCN9A	ENSG00000169432.10	chr2	-	167060464	167060735			167055181	167056374	167060869	167060974	0.18500	0.00076	0.01121	included	HepG2	U2AF2
SE	SCN9A	ENSG00000169432.10	chr2	-	167158601	167158810			167151108	167151172	167159599	167159812	0.60900	0.00066	0.01211	included	K562	PUS1
SE	SCN9A	ENSG00000169432.10	chr2	-	167060464	167060735			167055181	167056374	167060869	167060974	0.20000	0.00065	0.04797	included	HepG2	HNRNPL
A5SS	SCN9A	ENSG00000169432.10	chr2	-	167140962	167141334			167140995	167141334	167138269	167138318	0.31000	0.00063	0.02721	longer	HepG2	U2AF2
A5SS	SCN9A	ENSG00000169432.10	chr2	-	167140962	167141334			167140995	167141334	167138269	167138318	0.17100	0.00024	0.02595	longer	HepG2	U2AF1
MXE	SCN9A	ENSG00000169432.10	chr2	-	167163019	167163196	167163658	167163787	167162301	167162430	167168008	167168266	0.22800	0.00479	0.07003	1included	HepG2	U2AF1
MXE	SCN9A	ENSG00000169432.10	chr2	-	167160540	167160632	167160747	167160839	167159599	167159812	167162301	167162430	0.14300	0.00052	0.05742	1included	HepG2	KHSRP
MXE	SCN9A	ENSG00000169432.10	chr2	-	167163466	167163584	167163658	167163787	167163019	167163113	167168008	167168316	0.08500	0.00035	0.08247	1included	HepG2	AGGF1
MXE	SCN9A	ENSG00000169432.10	chr2	-	167160540	167160632	167160747	167160839	167159599	167159812	167162301	167162430	-0.15600	0.00025	0.00256	2included	HepG2	U2AF2
MXE	SCN9A	ENSG00000169432.10	chr2	-	167163466	167163584	167163658	167163787	167163019	167163113	167168008	167168316	0.42300	0.00000	0.00029	1included	HepG2	SF3B4
MXE	SCN9A	ENSG00000169432.10	chr2	-	167163019	167163113	167163658	167163787	167162301	167162430	167168008	167168316	0.31100	0.00024	0.01216	1included	HepG2	SF3B4
MXE	SCN9A	ENSG00000169432.10	chr2	-	167160540	167160632	167160747	167160839	167159599	167159812	167162301	167162430	-0.13500	0.00363	0.05024	2included	HepG2	HNRNPUL1
MXE	SCN9A	ENSG00000169432.10	chr2	-	167160540	167160632	167160747	167160839	167159599	167159812	167162301	167162430	-0.15200	0.00072	0.06813	2included	HepG2	ILF3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SCN9A

General Information

Functions

Localization

Domains (AlphaFold: SCN9A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCN9A is not avaliable on ENCORE database.

25 proteins are bound to SCN9A RNA:

eCLIP assay for SCN9A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCN9A is not available on ENCORE database.

149 RBPs can affect the gene expression of SCN9A :

The Knockdown/knockout RNA-Seq assay for SCN9A is not available on ENCORE database.

9 RBPs can affect the splicing of SCN9A :

The Knockdown/knockout RNA-Seq assay for SCN9A is not avaliable on ENCORE database.