CCR6

General Information

Gene Name       : CCR6
Gene ID             : ENSG00000112486.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCR6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCR6ENSG00000112486.165.125.155.13ENCSR000AEF
HepG2CCR6ENSG00000112486.162.423.062.74ENCSR985KAT
K562CCR6ENSG00000112486.160.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCR6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCR6 RNA is bound by 2 proteins.  







eCLIP assay for CCR6 is not avaliable on ENCORE database.





2 proteins are bound to CCR6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6167538520167538618+intron-Distal4.0679810.48875HepG2HNRNPL
chr6167538274167538347+intron-Distal3.877488.93230HepG2HNRNPL
chr6167538347167538391+intron-Distal3.970278.93849HepG2HNRNPL
chr6167538453167538520+intron-Distal3.331025.08563HepG2HNRNPL
chr6167538471167538621+intron-Distal3.125543.92862HepG2AGGF1
chr6167538391167538453+intron-Distal3.816148.68938HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCR6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCR6 is not available on ENCORE database.

  • 147 RBPs can affect the levels of CCR6.  








The Knockdown/knockout RNA-Seq assay for CCR6 is not available on ENCORE database.





147 RBPs can affect the gene expression of CCR6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCR6ENSG00000112486.1073.24100204.35320-1.480309.932208.06610HepG2AATF
CCR6ENSG00000112486.1094.39020306.18960-1.6977013.3378011.53110HepG2ABCF1
CCR6ENSG00000112486.1031.11840277.12940-3.1547046.3175044.58990HepG2ACO1
CCR6ENSG00000112486.1056.26350160.43490-1.511702.802801.80050HepG2ADAR
CCR6ENSG00000112486.1047.109401018.81040-4.43470110.91250108.43200HepG2AKAP1
CCR6ENSG00000112486.10175.16770344.85370-0.977206.803505.21600HepG2AKAP8
CCR6ENSG00000112486.10578.59750842.99980-0.543004.097203.14960HepG2ASCC1
CCR6ENSG00000112486.10468.95500276.241800.763406.001504.02340HepG2ATP5C1
CCR6ENSG00000112486.10685.52580274.432401.3207024.0865022.42970HepG2AUH
CCR6ENSG00000112486.10706.48750158.728202.1540033.3812030.84630HepG2BCLAF1
CCR6ENSG00000112486.10229.94200137.701600.739603.309402.66170HepG2BOP1
CCR6ENSG00000112486.10370.26220229.368200.690804.725503.13360HepG2BUD13
CCR6ENSG00000112486.1081.39290298.64330-1.8754015.7827013.61250HepG2CCAR1
CCR6ENSG00000112486.10183.99630337.77630-0.876403.763801.51480HepG2CDC40
CCR6ENSG00000112486.10251.20570118.680701.081705.232704.17570HepG2CNOT7
CCR6ENSG00000112486.10203.03750126.409300.683502.881302.18220HepG2CPSF6
CCR6ENSG00000112486.10267.59620164.539700.701503.726602.54270HepG2YBX3
CCR6ENSG00000112486.1046.49200112.82410-1.279005.206403.79230HepG2CSTF2
CCR6ENSG00000112486.10112.67360209.30890-0.893504.002102.25950HepG2CSTF2T
CCR6ENSG00000112486.10196.20570315.74550-0.686405.178704.34880HepG2CELF1
CCR6ENSG00000112486.101324.46160339.561701.9636093.3299090.37570HepG2DAZAP1
CCR6ENSG00000112486.1081.65730256.27880-1.6501019.6191017.87580HepG2DDX19B
CCR6ENSG00000112486.10357.03110164.739201.115803.187501.94900HepG2DDX1
CCR6ENSG00000112486.1034.36730225.28730-2.7127026.7831024.98950HepG2DDX21
CCR6ENSG00000112486.10223.41670136.048500.715503.134601.64850HepG2DDX28
CCR6ENSG00000112486.101847.61840975.985700.9206012.9342011.67440HepG2DDX3X
CCR6ENSG00000112486.10351.44090142.323601.304009.210107.02450HepG2DDX47
CCR6ENSG00000112486.1028.97100173.01220-2.578209.101106.91920HepG2DDX52
CCR6ENSG00000112486.10350.39370143.549801.287307.561205.98680HepG2DDX59
CCR6ENSG00000112486.10557.12390247.701001.1693013.8385011.81030HepG2DDX5
CCR6ENSG00000112486.10229.32880838.29210-1.8700029.8428028.13920HepG2DDX6
CCR6ENSG00000112486.10655.71320155.803402.0732042.0444039.19350HepG2DHX30
CCR6ENSG00000112486.1093.32350265.12300-1.5063014.5218013.22600HepG2DKC1
CCR6ENSG00000112486.10510.80210161.523101.6609019.0553017.38800HepG2DNAJC21
CCR6ENSG00000112486.10104.21760206.48040-0.986402.502101.62280HepG2EEF2
CCR6ENSG00000112486.10346.64250207.579900.739702.592001.52530HepG2AGO1
CCR6ENSG00000112486.10401.96980805.96960-1.0036011.3495010.19650HepG2EIF2S1
CCR6ENSG00000112486.10146.17580232.23690-0.667903.604602.26880HepG2EIF2S2
CCR6ENSG00000112486.1066.19870212.84490-1.6849013.6884011.65570HepG2EIF3G
CCR6ENSG00000112486.10368.56480890.73900-1.2731016.2802014.74030HepG2EIF4A3
CCR6ENSG00000112486.10263.49450867.16800-1.7185021.8612020.06890HepG2EIF4B
CCR6ENSG00000112486.101216.12690334.948701.8602067.7043064.76700HepG2EIF4G1
CCR6ENSG00000112486.10698.53630320.868401.1223014.1528012.41610HepG2EIF4G2
CCR6ENSG00000112486.10163.24740265.20870-0.700103.668202.42200HepG2ESF1
CCR6ENSG00000112486.10153.39830315.06710-1.038409.177008.18750HepG2ETF1
CCR6ENSG00000112486.10373.16280270.754400.462702.648601.83140HepG2EWSR1
CCR6ENSG00000112486.1055.21790309.16850-2.4852025.1687023.28010HepG2FIP1L1
CCR6ENSG00000112486.10491.22950149.506201.7161018.6635015.97160HepG2FKBP4
CCR6ENSG00000112486.10585.50520126.643202.2088015.9053013.61450HepG2FTO
CCR6ENSG00000112486.10807.87030500.503000.690607.261406.02620HepG2FUBP3
CCR6ENSG00000112486.1097.62720285.04390-1.545808.430506.59510HepG2FUS
CCR6ENSG00000112486.10196.57210898.57340-2.1926045.1568042.78550HepG2FXR1
CCR6ENSG00000112486.10156.68480833.63480-2.4116048.1913045.58640HepG2G3BP1
CCR6ENSG00000112486.10284.25200884.91060-1.6384028.5593025.88750HepG2G3BP2
CCR6ENSG00000112486.1041.25120149.27820-1.855505.763904.46730HepG2GEMIN5
CCR6ENSG00000112486.10344.66520215.136300.679804.234002.97200HepG2GNB2L1
CCR6ENSG00000112486.10225.80540143.272200.656202.576601.95590HepG2GPKOW
CCR6ENSG00000112486.1016.06670109.87660-2.7737013.5487011.16390HepG2GRSF1
CCR6ENSG00000112486.10315.40060199.682700.659403.629901.46610HepG2GRWD1
CCR6ENSG00000112486.10196.45380264.54470-0.429302.284401.39020HepG2HDGF
CCR6ENSG00000112486.10233.83580100.424901.219307.275104.97080HepG2HNRNPA0
CCR6ENSG00000112486.1024.23270163.07120-2.750508.253107.22280HepG2HNRNPA1
CCR6ENSG00000112486.10475.43290312.039100.607404.580003.42680HepG2HNRNPA2B1
CCR6ENSG00000112486.10182.6260098.059200.897104.043702.34020HepG2HNRNPAB
CCR6ENSG00000112486.1042.24420102.80560-1.283104.859702.85680HepG2HNRNPD
CCR6ENSG00000112486.10268.06750197.003700.444302.053901.42940HepG2HNRNPF
CCR6ENSG00000112486.10406.38700843.95280-1.0543013.6891012.25220HepG2HNRNPK
CCR6ENSG00000112486.10181.47090309.33220-0.769406.422905.43690HepG2HNRNPL
CCR6ENSG00000112486.10409.18510136.729301.5813016.7621015.39990HepG2HNRNPLL
CCR6ENSG00000112486.1088.30570213.28670-1.272208.780407.24630HepG2HNRNPM
CCR6ENSG00000112486.10346.67130193.989400.837506.398805.34060HepG2IGF2BP1
CCR6ENSG00000112486.1058.05760795.13790-3.7756034.6895031.60290HepG2IGF2BP3
CCR6ENSG00000112486.10431.58020852.28760-0.981709.128707.20870HepG2KHSRP
CCR6ENSG00000112486.10344.43920253.295600.443302.975301.92260HepG2KIF1C
CCR6ENSG00000112486.10613.22020375.233200.708504.654403.02800HepG2KRR1
CCR6ENSG00000112486.10130.27710315.38330-1.275509.252607.72750HepG2LARP4
CCR6ENSG00000112486.10102.45460210.70290-1.040205.631104.02710HepG2LARP7
CCR6ENSG00000112486.10416.01180898.88640-1.1115014.1174012.68480HepG2MAGOH
CCR6ENSG00000112486.10356.90370903.94100-1.3407017.6363016.15240HepG2MATR3
CCR6ENSG00000112486.1050.02750175.48120-1.810504.510103.18730HepG2METAP2
CCR6ENSG00000112486.10112.31550250.17900-1.155408.194206.87040HepG2MSI2
CCR6ENSG00000112486.10711.36680139.495702.3503030.3121027.39240HepG2MTPAP
CCR6ENSG00000112486.10176.33360925.25300-2.3915049.7755047.33580HepG2NCBP2
CCR6ENSG00000112486.10518.07750355.866800.541702.797101.35760HepG2NKRF
CCR6ENSG00000112486.10206.97740121.253200.771403.323102.50280HepG2NSUN2
CCR6ENSG00000112486.1094.18490178.34760-0.921102.336201.55120HepG2PARN
CCR6ENSG00000112486.10410.35240799.79090-0.9628017.9852016.65400HepG2PCBP1
CCR6ENSG00000112486.10391.61770263.516300.571503.614101.62400HepG2PES1
CCR6ENSG00000112486.10396.93560202.287800.972406.379503.93440HepG2PHF6
CCR6ENSG00000112486.10200.70150106.445500.914803.883402.07530HepG2PNPT1
CCR6ENSG00000112486.10231.64030160.650000.527902.764701.99150HepG2PRPF4
CCR6ENSG00000112486.10108.19130283.69310-1.390709.278807.19490HepG2PRPF6
CCR6ENSG00000112486.10160.59120813.82940-2.3413071.0635069.18170HepG2PTBP1
CCR6ENSG00000112486.10606.03650321.398900.914909.986308.95100HepG2PUF60
CCR6ENSG00000112486.10203.59060341.16040-0.744807.041706.18450HepG2PUM1
CCR6ENSG00000112486.10697.95600881.37120-0.336602.651202.03730HepG2QKI
CCR6ENSG00000112486.1088.72980260.45460-1.553508.451907.26290HepG2RAVER1
CCR6ENSG00000112486.10192.74870339.66300-0.817404.541902.27060HepG2RBM14
CCR6ENSG00000112486.10106.20670263.34160-1.3101010.595109.72580HepG2RBM22
CCR6ENSG00000112486.10284.57430799.91090-1.4910028.3027026.31820HepG2RBM25
CCR6ENSG00000112486.10117.87410254.06180-1.107906.328104.82130HepG2RBM27
CCR6ENSG00000112486.1055.41340114.64770-1.048903.581901.84450HepG2RBM47
CCR6ENSG00000112486.1075.94620905.70380-3.57600128.64000126.43610HepG2NELFE
CCR6ENSG00000112486.10133.38360843.55840-2.6609085.7677083.37660HepG2RECQL
CCR6ENSG00000112486.10445.32460255.767500.799904.639903.42810HepG2RPS10
CCR6ENSG00000112486.1044.90680163.09830-1.860706.154605.27880HepG2RPS19
CCR6ENSG00000112486.10148.40120234.33290-0.659102.612101.83320HepG2RPS2
CCR6ENSG00000112486.10241.09890119.239401.015705.392604.26960HepG2RPS3A
CCR6ENSG00000112486.10464.47440137.027301.7610018.3717016.68060HepG2RRP9
CCR6ENSG00000112486.10239.36120112.282801.092006.315304.35840HepG2SART3
CCR6ENSG00000112486.10200.93260113.235100.827303.240801.55790HepG2SBDS
CCR6ENSG00000112486.10264.57980163.742700.692203.008502.02620HepG2SERBP1
CCR6ENSG00000112486.10117.20200500.73980-2.0951025.5736023.46630HepG2SF3A3
CCR6ENSG00000112486.10656.10440135.321902.2774043.0740040.73300HepG2SF3B1
CCR6ENSG00000112486.10222.36920847.27950-1.9299053.3642051.41840HepG2SF3B4
CCR6ENSG00000112486.1087.72580244.82310-1.480704.132802.30240HepG2SFPQ
CCR6ENSG00000112486.10475.90120308.133000.627004.317703.46990HepG2SLBP
CCR6ENSG00000112486.10592.91790254.041601.222706.481704.16310HepG2SLTM
CCR6ENSG00000112486.10100.66150187.11410-0.894402.243201.65470HepG2SMN1
CCR6ENSG00000112486.10177.76370265.33480-0.577902.480901.57770HepG2SMNDC1
CCR6ENSG00000112486.1026.77350297.44120-3.4737047.4949046.08840HepG2SRFBP1
CCR6ENSG00000112486.10162.76220884.38530-2.4419079.4701077.73380HepG2SRSF1
CCR6ENSG00000112486.10344.81740193.559800.833007.063806.03390HepG2SRSF7
CCR6ENSG00000112486.10442.46770719.50230-0.7014010.308609.36130HepG2SRSF9
CCR6ENSG00000112486.103.21570258.26100-6.3275069.1730067.48590HepG2SSB
CCR6ENSG00000112486.10213.07030374.10660-0.812105.454903.72300HepG2SSRP1
CCR6ENSG00000112486.1024.52550103.74780-2.0807010.290308.03300HepG2STIP1
CCR6ENSG00000112486.10403.15590243.389400.728003.389302.04910HepG2SUB1
CCR6ENSG00000112486.10257.55020360.89060-0.486703.464502.78380HepG2SUCLG1
CCR6ENSG00000112486.1054.82120794.94480-3.85800122.63620119.58210HepG2TAF15
CCR6ENSG00000112486.10218.81180133.328800.714603.225002.44770HepG2TARDBP
CCR6ENSG00000112486.10360.85220730.41960-1.0173015.0535013.14180HepG2TIA1
CCR6ENSG00000112486.1084.15910175.02690-1.056402.705702.20970HepG2TIAL1
CCR6ENSG00000112486.10117.41260261.45410-1.155006.409504.23860HepG2TRA2A
CCR6ENSG00000112486.10340.68360176.674300.947205.272704.54540HepG2TRIM56
CCR6ENSG00000112486.1050.56340133.23620-1.397804.306902.36470HepG2TROVE2
CCR6ENSG00000112486.10199.52600313.96250-0.654004.036702.95660HepG2TUFM
CCR6ENSG00000112486.10627.35810264.449801.2462014.8247013.33110HepG2U2AF1
CCR6ENSG00000112486.10475.05190332.304200.515502.303201.54480HepG2UBE2L3
CCR6ENSG00000112486.101260.60850444.080401.5051014.0513012.70850HepG2UPF1
CCR6ENSG00000112486.1057.34080163.69890-1.513407.139605.47800HepG2UPF2
CCR6ENSG00000112486.10160.07630428.74110-1.4213019.4637018.09480HepG2UTP3
CCR6ENSG00000112486.10388.03120106.806701.8611016.6390014.05190HepG2XPO5
CCR6ENSG00000112486.10124.40090286.38950-1.203007.948606.23860HepG2XRCC6
CCR6ENSG00000112486.1066.76010176.01670-1.398707.540606.35680HepG2XRN2
CCR6ENSG00000112486.101049.38830488.402401.1033013.3148012.34070HepG2ZNF622
CCR6ENSG00000112486.10137.20260260.13990-0.923005.132703.30140HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCR6 is not available on ENCORE database.





1 RBPs can affect the splicing of CCR6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCR6ENSG00000112486.10chr6+1675484211675485541675366061675367111675495251675496310.105000.003570.05803includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCR6 is not avaliable on ENCORE database.