VPS13A

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VPS13A	ENSG00000197969.12	19.33	17.56	18.45	ENCSR000AEF
HepG2	VPS13A	ENSG00000197969.12	4.71	12.41	8.56	ENCSR985KAT
K562	VPS13A	ENSG00000197969.12	7.94	9.87	8.90	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VPS13A is not avaliable on ENCORE database.

Proteins bound to RNA

VPS13A RNA is bound by 36 proteins.

eCLIP assay for VPS13A is not avaliable on ENCORE database.

36 proteins are bound to VPS13A RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	79930302	79930387	+	3'-UTR,CDS,intron-Proximal	4.72875	10.14724	HepG2	EIF3H
chr9	79922972	79923015	+	3'-UTR,CDS,intron-Proximal	5.26176	25.07496	HepG2	BCLAF1
chr9	79933243	79933310	+	3'-UTR,CDS	3.21455	3.43213	K562	UCHL5
chr9	79933253	79933365	+	3'-UTR,CDS	5.03653	31.58899	HepG2	BCLAF1
chr9	79930299	79930378	+	3'-UTR,CDS	3.74192	3.15816	HepG2	PRPF4
chr9	79922898	79923016	+	3'-UTR,CDS,intron-Proximal	3.96318	3.01531	K562	YBX3
chr9	79934518	79934590	+	3'-UTR,CDS,intron-Proximal	4.82726	5.41896	HepG2	FXR2
chr9	79922888	79923012	+	3'-UTR,CDS	3.92351	12.67175	HepG2	HLTF
chr9	79930288	79930328	+	3'-UTR,CDS	5.05410	14.51064	HepG2	BCLAF1
chr9	79933383	79933456	+	3'-UTR,CDS	5.08647	6.24363	HepG2	EIF3H
chr9	80032317	80032408	+	3'-UTR	3.33380	3.35585	HepG2	QKI
chr9	79932540	79932606	+	3'-UTR,CDS	4.72188	18.65654	HepG2	BCLAF1
chr9	79999921	80000007	+	3'-UTR,intron-Distal	3.83910	10.38566	K562	PUM2
chr9	79930356	79930385	+	3'-UTR,CDS	3.26662	8.84415	HepG2	BCLAF1
chr9	79933270	79933445	+	3'-UTR,CDS	3.01990	5.79724	HepG2	FXR2
chr9	79931236	79931312	+	3'-UTR,CDS	3.67541	10.65310	HepG2	BCLAF1
chr9	79934518	79934590	+	3'-UTR,CDS,intron-Proximal	4.64379	7.36864	HepG2	EIF3H
chr9	79930191	79930288	+	3'-UTR,CDS	6.02840	24.83941	HepG2	BCLAF1
chr9	79931134	79931164	+	3'-UTR,CDS	5.77281	11.17302	HepG2	BCLAF1
chr9	79934523	79934589	+	3'-UTR,CDS	4.73092	22.71888	HepG2	BCLAF1
chr9	79922895	79922972	+	3'-UTR,CDS	4.48970	26.47850	HepG2	BCLAF1
chr9	79922899	79922993	+	3'-UTR,CDS	5.64878	8.03864	HepG2	EIF3H
chr9	79922891	79923015	+	3'-UTR,CDS,intron-Proximal	3.51638	5.28199	HepG2	GRWD1
chr9	79929538	79929579	+	3'-UTR,CDS	4.08034	11.21209	HepG2	BCLAF1
chr9	79933262	79933338	+	3'-UTR,CDS	3.83995	3.21205	HepG2	EIF3H
chr9	79933464	79933491	+	3'-UTR,CDS	3.08950	3.07152	HepG2	HLTF
chr9	79929532	79929581	+	3'-UTR,CDS,intron-Proximal	3.51990	3.88337	HepG2	FXR2
chr9	79932522	79932579	+	3'-UTR,CDS	4.53378	3.18415	HepG2	FASTKD2
chr9	79928907	79928945	+	3'-UTR,CDS,intron-Proximal	4.43352	15.99938	HepG2	BCLAF1
chr9	79930192	79930269	+	3'-UTR,CDS	4.09960	4.20767	HepG2	EIF3D
chr9	79933413	79933468	+	3'-UTR,CDS	3.83762	13.36544	HepG2	BCLAF1
chr9	79999620	79999690	+	3'-UTR,intron-Distal	4.67907	5.34107	HepG2	KHSRP
chr9	79934529	79934587	+	3'-UTR,CDS	3.25227	3.24137	HepG2	EIF3D
chr9	79792562	79792648	+	5'-UTR,CDS	3.56461	5.91739	K562	UCHL5
chr9	79792564	79792629	+	5'-UTR,CDS	4.17718	4.13073	HepG2	GTF2F1
chr9	79792450	79792521	+	5'-UTR	4.44058	4.78731	HepG2	NCBP2
chr9	79792536	79792616	+	5'-UTR	3.65918	8.11150	HepG2	PRPF4
chr9	80004746	80004850	+	5'-UTR,intron-Distal	3.11021	4.76345	K562	KHSRP
chr9	79955146	79955182	+	CDS	3.08355	8.20182	HepG2	BCLAF1
chr9	79865012	79865071	+	CDS,intron-Proximal	3.95672	14.72633	HepG2	BCLAF1
chr9	79825530	79825571	+	CDS,intron-Proximal	3.68306	3.85588	HepG2	ZNF800
chr9	79984310	79984326	+	CDS	3.45457	8.99805	HepG2	BCLAF1
chr9	79952187	79952220	+	CDS	3.54062	7.74581	HepG2	BCLAF1
chr9	79959986	79960034	+	CDS	4.63443	15.18491	HepG2	BCLAF1
chr9	79895114	79895141	+	CDS	4.45579	18.33118	HepG2	BCLAF1
chr9	79867243	79867267	+	CDS	4.87603	11.99174	HepG2	BCLAF1
chr9	79792702	79792722	+	CDS,intron-Proximal	4.55940	4.90367	K562	ZNF622
chr9	79985991	79986029	+	CDS	3.31936	7.74581	HepG2	BCLAF1
chr9	79829242	79829294	+	CDS,intron-Proximal	3.05336	3.73997	K562	ZNF622
chr9	79936084	79936100	+	CDS,intron-Proximal	4.55522	12.43877	HepG2	BCLAF1
chr9	79985437	79985494	+	CDS	4.06903	7.05872	HepG2	PPIG
chr9	79908309	79908332	+	CDS	3.17486	6.09950	HepG2	BCLAF1
chr9	79829243	79829299	+	CDS,intron-Proximal	3.21741	5.32969	HepG2	PPIG
chr9	79980315	79980395	+	CDS,intron-Proximal	4.90068	4.40745	K562	SF3B4
chr9	79996943	79997015	+	CDS,intron-Proximal	5.19900	8.04585	HepG2	PRPF8
chr9	79820900	79820940	+	CDS	4.27650	12.52201	HepG2	BCLAF1
chr9	79895141	79895155	+	CDS,intron-Proximal	4.80273	16.18601	HepG2	BCLAF1
chr9	79827919	79827939	+	CDS	3.92614	7.65975	HepG2	BCLAF1
chr9	79910467	79910545	+	CDS	3.65241	20.48804	HepG2	BCLAF1
chr9	79890964	79891047	+	CDS,intron-Proximal	3.06828	3.66814	K562	U2AF2
chr9	79985175	79985220	+	CDS	3.53958	6.81103	HepG2	PPIG
chr9	79875008	79875031	+	CDS	5.64498	11.16146	HepG2	BCLAF1
chr9	79955425	79955467	+	CDS,intron-Proximal	4.87970	16.89898	HepG2	BCLAF1
chr9	79936493	79936566	+	CDS	5.25618	19.60770	HepG2	BCLAF1
chr9	79862233	79862256	+	CDS	3.11651	6.33024	HepG2	BCLAF1
chr9	79955093	79955135	+	CDS,intron-Proximal	3.69977	13.02953	HepG2	BCLAF1
chr9	79825571	79825591	+	CDS	4.20874	3.74641	HepG2	ZNF800
chr9	79936403	79936455	+	CDS,intron-Proximal	4.27405	5.95105	HepG2	EIF3H
chr9	79875060	79875140	+	CDS	4.24615	20.48332	HepG2	BCLAF1
chr9	79891019	79891085	+	CDS	4.27459	21.15094	HepG2	BCLAF1
chr9	79936084	79936159	+	CDS,intron-Proximal	4.39504	4.56106	HepG2	EIF3H
chr9	79954458	79954509	+	CDS	3.49859	10.76374	HepG2	BCLAF1
chr9	79827833	79827931	+	CDS,intron-Proximal	3.38791	8.38544	K562	SF3B4
chr9	79841415	79841515	+	CDS,intron-Proximal	3.07449	3.84692	K562	UCHL5
chr9	79843053	79843137	+	CDS	6.37000	37.43194	HepG2	BCLAF1
chr9	79896691	79896785	+	CDS,intron-Proximal	4.11409	3.89294	K562	KHSRP
chr9	79853188	79853236	+	CDS	3.12617	8.27894	HepG2	BCLAF1
chr9	79952392	79952440	+	CDS	4.55883	3.33922	HepG2	EIF3H
chr9	79841497	79841514	+	CDS	4.41272	12.88094	HepG2	BCLAF1
chr9	79896783	79896824	+	CDS	5.46064	19.29311	HepG2	BCLAF1
chr9	79825533	79825554	+	CDS	4.77281	10.19430	HepG2	BCLAF1
chr9	79835193	79835239	+	CDS	3.64987	12.18505	HepG2	BCLAF1
chr9	79820849	79821035	+	CDS,intron-Proximal	4.26536	6.11702	K562	SF3B4
chr9	79897110	79897176	+	CDS	3.57387	11.73537	HepG2	BCLAF1
chr9	79890423	79890501	+	CDS	4.30535	18.05569	HepG2	BCLAF1
chr9	79816281	79816394	+	CDS,intron-Proximal	3.45860	3.87994	K562	EFTUD2
chr9	79898447	79898488	+	CDS,intron-Proximal	4.17411	3.77802	HepG2	U2AF2
chr9	79936101	79936173	+	CDS	3.42063	5.35144	K562	ZNF622
chr9	79959070	79959090	+	CDS	3.26385	7.61291	HepG2	BCLAF1
chr9	79814854	79814904	+	CDS,intron-Proximal	3.27587	3.91614	K562	BUD13
chr9	79834920	79834982	+	CDS	3.34013	16.91614	HepG2	BCLAF1
chr9	80020876	80020891	+	CDS	3.66911	6.39464	HepG2	BCLAF1
chr9	79946925	79947012	+	CDS,intron-Proximal	3.51474	3.73778	HepG2	EIF3D
chr9	79898469	79898502	+	CDS	4.66530	10.47008	HepG2	BCLAF1
chr9	79841429	79841515	+	CDS,intron-Proximal	4.03851	7.58753	HepG2	EIF3H
chr9	79834924	79834998	+	CDS,intron-Proximal	3.89984	5.14848	K562	ZNF622
chr9	79968401	79968492	+	CDS	3.77115	4.83483	HepG2	FXR2
chr9	79896782	79896829	+	CDS,intron-Proximal	4.56248	4.84481	HepG2	PPIG
chr9	79828211	79828230	+	CDS	5.77281	11.17302	HepG2	BCLAF1
chr9	79936493	79936536	+	CDS	3.42250	3.61076	HepG2	HLTF
chr9	79827820	79827929	+	CDS,intron-Proximal	3.89321	9.04524	K562	AQR
chr9	79936100	79936164	+	CDS	5.63011	30.12860	HepG2	BCLAF1
chr9	79936084	79936160	+	CDS,intron-Proximal	3.08645	3.01994	K562	BUD13
chr9	79862281	79862297	+	CDS	3.54505	12.42637	HepG2	BCLAF1
chr9	79820309	79820319	+	CDS	4.22830	6.84316	HepG2	BCLAF1
chr9	79954436	79954458	+	CDS	3.81005	9.50935	HepG2	BCLAF1
chr9	79974248	79974266	+	CDS,intron-Proximal	4.89084	10.19430	HepG2	BCLAF1
chr9	79954794	79954827	+	CDS	3.99678	9.43524	HepG2	BCLAF1
chr9	79937982	79938029	+	CDS,intron-Proximal	4.93627	5.26450	HepG2	EIF3H
chr9	79888195	79888246	+	CDS,intron-Proximal	3.42496	5.74289	HepG2	HLTF
chr9	79875038	79875129	+	CDS	4.81196	4.40915	HepG2	ZNF800
chr9	80020785	80020819	+	CDS	5.53378	8.40988	HepG2	BCLAF1
chr9	79842309	79842373	+	CDS	3.55206	3.95937	K562	UCHL5
chr9	79936373	79936459	+	CDS,intron-Proximal	3.45259	4.81700	HepG2	U2AF2
chr9	79888195	79888263	+	CDS,intron-Proximal	4.30358	13.37200	HepG2	BCLAF1
chr9	79895076	79895089	+	CDS	4.02224	7.58784	HepG2	BCLAF1
chr9	79824434	79824447	+	CDS	4.59784	9.80377	HepG2	BCLAF1
chr9	79936083	79936192	+	CDS,intron-Proximal	3.16260	3.26317	HepG2	FXR2
chr9	79840864	79840906	+	CDS,intron-Proximal	3.89747	12.01397	HepG2	BCLAF1
chr9	79985220	79985250	+	CDS,intron-Proximal	3.43850	7.87154	HepG2	PPIG
chr9	79816280	79816309	+	CDS,intron-Proximal	3.35496	3.86355	HepG2	PPIG
chr9	79985204	79985248	+	CDS	4.17324	5.31703	HepG2	EIF3H
chr9	79936084	79936182	+	CDS,intron-Proximal	3.56005	7.75887	HepG2	HLTF
chr9	79952331	79952388	+	CDS	5.16709	14.17165	HepG2	BCLAF1
chr9	79936407	79936453	+	CDS	3.77236	9.41803	HepG2	BCLAF1
chr9	79982978	79983046	+	CDS	3.20048	13.08286	HepG2	BCLAF1
chr9	79827884	79827919	+	CDS,intron-Proximal	3.23696	14.21097	HepG2	BCLAF1
chr9	79985330	79985358	+	CDS,intron-Proximal	5.18784	10.19430	HepG2	BCLAF1
chr9	79985453	79985500	+	CDS,intron-Proximal	3.54826	3.69481	K562	UCHL5
chr9	79829244	79829271	+	CDS,intron-Proximal	5.89813	12.56307	HepG2	BCLAF1
chr9	79954626	79954657	+	CDS	3.08462	7.61291	HepG2	BCLAF1
chr9	79952388	79952439	+	CDS	3.25939	7.43909	HepG2	BCLAF1
chr9	79875031	79875060	+	CDS	5.06323	14.25738	HepG2	BCLAF1
chr9	79867150	79867194	+	CDS,intron-Proximal	5.16530	14.51064	HepG2	BCLAF1
chr9	79985997	79986044	+	CDS	4.50854	3.29312	HepG2	FXR2
chr9	79836232	79836272	+	CDS	3.84707	3.04254	K562	UCHL5
chr9	79862297	79862311	+	CDS	3.58034	11.76397	HepG2	BCLAF1
chr9	79898285	79898369	+	CDS,intron-Distal,intron-Proximal	5.23628	22.33420	HepG2	BCLAF1
chr9	79834982	79834993	+	CDS	3.49134	7.01246	HepG2	BCLAF1
chr9	79996891	79996926	+	CDS,intron-Proximal	3.22345	3.32039	HepG2	PPIG
chr9	79974266	79974312	+	CDS	4.09152	9.50935	HepG2	BCLAF1
chr9	79843065	79843111	+	CDS	4.44217	4.90367	K562	ZNF622
chr9	79829243	79829291	+	CDS,intron-Proximal	3.62426	4.06757	K562	UCHL5
chr9	79834872	79834941	+	CDS	3.46379	3.96535	HepG2	AQR
chr9	79841420	79841500	+	CDS	3.03715	5.28660	HepG2	HLTF
chr9	79895107	79895154	+	CDS	3.32426	4.51003	HepG2	PPIG
chr9	79814858	79814903	+	CDS,intron-Proximal	3.30497	5.35144	K562	ZNF622
chr9	79890554	79890721	+	CDS,intron-Distal,intron-Proximal	3.79382	3.19904	K562	TIA1
chr9	79828174	79828231	+	CDS,intron-Proximal	3.63602	5.21950	K562	DDX24
chr9	79842345	79842394	+	CDS	4.13585	12.83484	HepG2	BCLAF1
chr9	79895090	79895114	+	CDS	3.93210	15.27481	HepG2	BCLAF1
chr9	79960047	79960057	+	CDS	3.90638	8.49795	HepG2	BCLAF1
chr9	79834893	79834998	+	CDS,intron-Proximal	3.10165	4.88466	K562	UCHL5
chr9	79825514	79825594	+	CDS,intron-Proximal	3.14825	5.34771	K562	DDX24
chr9	79827869	79827935	+	CDS,intron-Proximal	5.44234	20.73035	HepG2	AQR
chr9	79985223	79985247	+	CDS	4.29347	9.50935	HepG2	BCLAF1
chr9	79820272	79820286	+	CDS	4.13907	6.65960	HepG2	BCLAF1
chr9	79824390	79824450	+	CDS,intron-Proximal	3.19883	4.02291	HepG2	GRWD1
chr9	79917842	79917881	+	CDS	3.82626	9.50935	HepG2	BCLAF1
chr9	79975526	79975544	+	CDS	3.26162	4.61799	HepG2	BCLAF1
chr9	79937995	79938040	+	CDS	4.31530	12.07231	HepG2	BCLAF1
chr9	79825519	79825582	+	CDS,intron-Proximal	4.05347	4.29034	K562	U2AF2
chr9	79890984	79891019	+	CDS	3.83979	11.53232	HepG2	BCLAF1
chr9	79946950	79947024	+	CDS	3.44769	13.09340	HepG2	BCLAF1
chr9	79867194	79867235	+	CDS	4.25660	13.72084	HepG2	BCLAF1
chr9	79825496	79825579	+	CDS,intron-Proximal	3.30909	5.58362	HepG2	U2AF2
chr9	79825558	79825592	+	CDS,intron-Proximal	4.19139	16.66938	HepG2	BCLAF1
chr9	79999448	79999568	+	CDS,intron-Distal,intron-Proximal	3.37422	12.93360	HepG2	U2AF2
chr9	79824411	79824434	+	CDS	4.80062	11.13876	HepG2	BCLAF1
chr9	79862256	79862281	+	CDS	3.21124	9.33743	HepG2	BCLAF1
chr9	79792637	79792709	+	CDS	3.45194	3.77385	HepG2	NCBP2
chr9	79910473	79910520	+	CDS	4.53447	5.09803	HepG2	EIF3H
chr9	79936164	79936195	+	CDS	6.13684	16.70760	HepG2	BCLAF1
chr9	79973322	79973354	+	CDS	5.02210	11.54096	HepG2	BCLAF1
chr9	79841404	79841497	+	CDS	6.19783	33.22170	HepG2	BCLAF1
chr9	79938095	79938142	+	CDS	3.48166	7.66871	HepG2	BCLAF1
chr9	79917836	79917893	+	CDS	3.07098	3.29171	HepG2	EIF3D
chr9	79865110	79865145	+	CDS	4.49134	12.43877	HepG2	BCLAF1
chr9	79981749	79981778	+	CDS	4.50755	8.47938	HepG2	BCLAF1
chr9	79842306	79842345	+	CDS,intron-Proximal	4.36255	13.12590	HepG2	BCLAF1
chr9	79910653	79910700	+	CDS	4.43582	12.43877	HepG2	BCLAF1
chr9	79895084	79895153	+	CDS	3.19656	5.86900	HepG2	HLTF
chr9	79834867	79834893	+	CDS,intron-Proximal	3.08585	3.70975	K562	UCHL5
chr9	79824349	79824449	+	CDS,intron-Proximal	3.66780	6.00958	HepG2	ZNF800
chr9	79824372	79824450	+	CDS,intron-Proximal	3.40343	4.74755	K562	ZNF622
chr9	79891098	79891137	+	CDS	4.02466	12.28745	HepG2	BCLAF1
chr9	79828212	79828231	+	CDS,intron-Proximal	3.42871	5.74131	HepG2	PPIG
chr9	79981644	79981691	+	CDS	4.67916	12.88094	HepG2	BCLAF1
chr9	79820893	79820959	+	CDS,intron-Proximal	3.28501	4.41784	HepG2	GRWD1
chr9	79936321	79936413	+	CDS,intron-Proximal	4.36388	5.85485	K562	KHSRP
chr9	79843137	79843180	+	CDS	5.89593	26.23206	HepG2	BCLAF1
chr9	79825528	79825595	+	CDS,intron-Proximal	5.38441	8.25598	HepG2	PPIG
chr9	79936238	79936321	+	CDS,intron-Proximal	4.59199	6.51328	K562	KHSRP
chr9	79895083	79895155	+	CDS,intron-Proximal	3.61366	3.61259	K562	ZNF622
chr9	79890556	79890567	+	CDS	3.58887	5.56491	HepG2	BCLAF1
chr9	79895719	79895822	+	intron-Distal	4.23095	4.07352	K562	KHSRP
chr9	79956452	79956537	+	intron-Distal	5.32538	6.57566	K562	PTBP1
chr9	79803801	79803873	+	intron-Distal	6.06845	17.65810	K562	EXOSC5
chr9	79804868	79804937	+	intron-Distal	4.88149	12.54773	K562	EXOSC5
chr9	79975271	79975387	+	intron-Distal,intron-Proximal	4.23675	3.24603	K562	KHSRP
chr9	79807974	79808023	+	intron-Distal	3.69008	6.96489	K562	EXOSC5
chr9	79806803	79806848	+	intron-Distal	3.87550	6.11008	K562	EXOSC5
chr9	79805031	79805093	+	intron-Distal	3.78192	4.02190	K562	EXOSC5
chr9	79801678	79801775	+	intron-Distal	3.17972	4.73661	K562	HNRNPL
chr9	79848756	79848890	+	intron-Distal	3.04634	3.57533	K562	KHSRP
chr9	79904004	79904096	+	intron-Distal	3.65305	5.30446	HepG2	SUGP2
chr9	79960643	79960710	+	intron-Distal	4.26157	3.18981	K562	PTBP1
chr9	79938622	79938665	+	intron-Distal	3.61637	3.91876	HepG2	U2AF2
chr9	79964098	79964164	+	intron-Distal	3.50428	5.47669	K562	PTBP1
chr9	79805283	79805338	+	intron-Distal	5.61821	12.32698	K562	EXOSC5
chr9	79808995	79809150	+	intron-Distal	4.43345	5.09405	K562	NONO
chr9	79803485	79803513	+	intron-Distal	4.38979	4.80399	K562	EXOSC5
chr9	79965280	79965353	+	intron-Distal	4.82389	6.15877	HepG2	U2AF2
chr9	79998420	79998542	+	intron-Distal	3.78725	9.68409	HepG2	QKI
chr9	79856099	79856208	+	intron-Distal	3.70389	3.68462	HepG2	MATR3
chr9	79805888	79805921	+	intron-Distal	4.93324	7.38693	K562	EXOSC5
chr9	79805677	79805836	+	intron-Distal	4.31389	3.60235	HepG2	HNRNPM
chr9	79856098	79856159	+	intron-Distal	3.96184	4.69074	K562	PTBP1
chr9	79998034	79998117	+	intron-Distal	3.58879	4.54121	HepG2	KHSRP
chr9	79956467	79956518	+	intron-Distal	4.12092	3.29248	HepG2	SUGP2
chr9	79803816	79803919	+	intron-Distal	4.38609	4.38558	HepG2	HNRNPM
chr9	79967777	79967855	+	intron-Distal	3.99753	3.48768	HepG2	KHSRP
chr9	79895393	79895446	+	intron-Distal	4.18513	3.45799	HepG2	U2AF2
chr9	79805425	79805450	+	intron-Distal	4.21454	3.89080	K562	EXOSC5
chr9	79792962	79793036	+	intron-Distal	4.19523	4.72743	K562	NONO
chr9	79814494	79814598	+	intron-Distal	3.53185	3.28806	K562	KHSRP
chr9	79811339	79811458	+	intron-Distal	3.74837	3.03891	HepG2	PTBP1
chr9	80002701	80002902	+	intron-Distal	3.51278	5.40624	K562	KHSRP
chr9	79848642	79848715	+	intron-Distal	4.58302	4.48560	K562	EXOSC5
chr9	79867536	79867602	+	intron-Distal	4.34609	4.20763	HepG2	U2AF2
chr9	79825118	79825192	+	intron-Distal	3.97699	3.89149	HepG2	HNRNPK
chr9	79807072	79807117	+	intron-Distal	4.01598	7.01277	K562	EXOSC5
chr9	79867785	79867888	+	intron-Distal	5.01706	7.58902	K562	KHSRP
chr9	79973762	79973890	+	intron-Distal	4.75855	5.07733	HepG2	PTBP1
chr9	79807350	79807395	+	intron-Distal	4.52287	4.48560	K562	EXOSC5
chr9	79809051	79809115	+	intron-Distal	3.94683	3.54208	HepG2	SUGP2
chr9	79974802	79974878	+	intron-Distal	4.10659	3.66668	K562	KHSRP
chr9	79848815	79848898	+	intron-Distal	4.03527	3.54208	HepG2	SUGP2
chr9	79825084	79825159	+	intron-Distal	4.18556	6.11515	K562	PTBP1
chr9	79806709	79806839	+	intron-Distal	4.86678	6.10662	K562	HNRNPM
chr9	80010259	80010332	+	intron-Distal	4.66215	6.07481	HepG2	SUGP2
chr9	79880177	79880222	+	intron-Distal	3.12202	3.91899	K562	EXOSC5
chr9	79923071	79923160	+	intron-Distal,intron-Proximal	5.28638	8.11407	K562	PTBP1
chr9	79931736	79931905	+	intron-Distal	3.95541	5.60471	HepG2	U2AF2
chr9	79968191	79968234	+	intron-Distal,intron-Proximal	3.82232	3.16986	HepG2	QKI
chr9	79964092	79964177	+	intron-Distal	3.72573	8.84888	HepG2	PTBP1
chr9	79907397	79907452	+	intron-Distal	3.42202	4.33009	HepG2	SUGP2
chr9	79998389	79998470	+	intron-Distal	4.19836	7.22647	K562	QKI
chr9	80002318	80002382	+	intron-Distal	5.08410	6.83215	HepG2	U2AF2
chr9	79998130	79998213	+	intron-Distal	4.22724	4.29306	HepG2	KHSRP
chr9	79805814	79805834	+	intron-Distal	4.06476	3.30687	K562	EXOSC5
chr9	79805641	79805665	+	intron-Distal	4.34605	4.48560	K562	EXOSC5
chr9	79856079	79856171	+	intron-Distal	3.72606	3.06015	K562	MATR3
chr9	79801682	79801778	+	intron-Distal	3.16795	5.73989	HepG2	HNRNPL
chr9	79960642	79960791	+	intron-Distal	3.26891	7.45054	HepG2	HNRNPL
chr9	79803733	79803772	+	intron-Distal	4.31535	3.01456	K562	EXOSC5
chr9	79911439	79911521	+	intron-Distal	3.25382	4.89779	HepG2	PTBP1
chr9	79856072	79856195	+	intron-Distal	5.64735	11.59253	HepG2	PTBP1
chr9	79792935	79793041	+	intron-Distal	4.10848	3.67126	HepG2	NKRF
chr9	79825119	79825201	+	intron-Distal	5.61210	8.19722	HepG2	PCBP2
chr9	79825111	79825198	+	intron-Distal	4.36637	11.31780	HepG2	PTBP1
chr9	79806775	79806835	+	intron-Distal	3.26321	3.59351	HepG2	MATR3
chr9	79806667	79806747	+	intron-Distal	6.33581	18.66479	K562	EXOSC5
chr9	79881082	79881148	+	intron-Distal	4.09730	3.01456	K562	EXOSC5
chr9	79806224	79806270	+	intron-Distal	5.13854	7.06230	K562	EXOSC5
chr9	79806766	79806828	+	intron-Distal	3.46209	3.42785	HepG2	HNRNPM
chr9	79895400	79895534	+	intron-Distal	4.46278	4.54401	K562	KHSRP
chr9	79923043	79923159	+	intron-Distal,intron-Proximal	5.40109	9.51434	HepG2	PTBP1
chr9	79804063	79804119	+	intron-Distal	5.91070	13.98677	K562	EXOSC5
chr9	79825123	79825211	+	intron-Distal	3.38853	5.40232	HepG2	U2AF2
chr9	79827821	79827869	+	intron-Proximal	6.63149	19.80524	HepG2	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for VPS13A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for VPS13A is not available on ENCORE database.
134 RBPs can affect the levels of VPS13A.

The Knockdown/knockout RNA-Seq assay for VPS13A is not available on ENCORE database.

134 RBPs can affect the gene expression of VPS13A :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VPS13A	ENSG00000197969.7	2720.06240	1984.15480	0.45500	5.22090	3.78660	HepG2	AATF
VPS13A	ENSG00000197969.7	2253.23740	3241.66990	-0.52470	5.39880	4.13280	HepG2	ABCF1
VPS13A	ENSG00000197969.7	4528.65720	3391.93310	0.41690	7.52950	6.62680	HepG2	ACO1
VPS13A	ENSG00000197969.7	1280.48170	2245.63470	-0.81040	12.32960	10.44110	HepG2	ADAR
VPS13A	ENSG00000197969.7	2055.67700	3143.68720	-0.61280	6.01270	5.26290	HepG2	AKAP1
VPS13A	ENSG00000197969.7	5429.27210	3868.18550	0.48900	13.22540	11.92210	HepG2	AUH
VPS13A	ENSG00000197969.7	2744.41650	1747.18630	0.65140	5.95370	4.69070	HepG2	BCLAF1
VPS13A	ENSG00000197969.7	3905.50830	2265.95200	0.78530	14.75300	13.52340	HepG2	BOP1
VPS13A	ENSG00000197969.7	3073.11630	2428.80090	0.33940	3.57780	2.18730	HepG2	BUD13
VPS13A	ENSG00000197969.7	3849.17050	2382.50980	0.69200	15.25020	13.69570	HepG2	CALR
VPS13A	ENSG00000197969.7	1901.40480	2471.26820	-0.37820	3.16280	2.33770	HepG2	CIRBP
VPS13A	ENSG00000197969.7	2741.12740	3391.77140	-0.30730	2.57260	1.92690	HepG2	CKAP4
VPS13A	ENSG00000197969.7	3176.52820	2080.27480	0.61060	8.26850	7.13350	HepG2	CPSF6
VPS13A	ENSG00000197969.7	4253.12790	2669.67400	0.67180	12.73110	10.57270	HepG2	CPSF7
VPS13A	ENSG00000197969.7	2997.20690	2031.32510	0.56110	4.37710	2.52390	HepG2	CSTF2T
VPS13A	ENSG00000197969.7	2400.22010	2936.56430	-0.29100	6.05190	5.01560	HepG2	DAZAP1
VPS13A	ENSG00000197969.7	2130.49330	3137.31670	-0.55830	6.69770	5.48980	HepG2	DDX19B
VPS13A	ENSG00000197969.7	2715.86290	2306.11190	0.23580	2.57050	1.45510	HepG2	DDX1
VPS13A	ENSG00000197969.7	1348.52560	2189.63760	-0.69930	10.94900	9.70300	HepG2	DDX21
VPS13A	ENSG00000197969.7	2294.35760	1497.92230	0.61500	5.35230	3.48350	HepG2	DDX28
VPS13A	ENSG00000197969.7	3913.39020	2780.61530	0.49290	6.29640	4.39370	HepG2	DDX47
VPS13A	ENSG00000197969.7	4519.33020	2362.30240	0.93580	7.37120	5.81600	HepG2	DDX59
VPS13A	ENSG00000197969.7	3369.69220	2180.99330	0.62750	9.89850	8.17600	HepG2	DHX30
VPS13A	ENSG00000197969.7	1719.58300	3245.30960	-0.91630	14.02290	12.74070	HepG2	DKC1
VPS13A	ENSG00000197969.7	1997.08520	2241.20630	-0.16640	1.99810	1.42730	HepG2	DNAJC2
VPS13A	ENSG00000197969.7	1225.90350	2455.38510	-1.00210	17.67100	15.66700	HepG2	EEF2
VPS13A	ENSG00000197969.7	3622.11170	2015.97640	0.84530	9.88020	7.89860	HepG2	AGO1
VPS13A	ENSG00000197969.7	3610.27340	2486.84540	0.53770	5.71000	4.87600	HepG2	EIF2S1
VPS13A	ENSG00000197969.7	1308.95980	2067.47530	-0.65940	11.28620	9.40660	HepG2	EIF3G
VPS13A	ENSG00000197969.7	5005.12530	2896.75830	0.78890	29.89420	27.77920	HepG2	EIF4G1
VPS13A	ENSG00000197969.7	3010.74650	2086.42340	0.52900	7.54570	5.82750	HepG2	FASTKD2
VPS13A	ENSG00000197969.7	2391.52750	1645.27900	0.53950	4.04610	2.53230	HepG2	FKBP4
VPS13A	ENSG00000197969.7	3306.32350	2083.82520	0.66590	2.76360	1.74920	HepG2	FTO
VPS13A	ENSG00000197969.7	2284.08700	1464.88310	0.64070	10.07620	8.62110	HepG2	FUBP3
VPS13A	ENSG00000197969.7	2046.09540	2772.80700	-0.43850	4.02930	3.20440	HepG2	FXR1
VPS13A	ENSG00000197969.7	956.46580	1774.81500	-0.89190	13.07720	11.24370	HepG2	GEMIN5
VPS13A	ENSG00000197969.7	1420.77500	2422.82880	-0.77000	3.33750	2.21290	HepG2	GNB2L1
VPS13A	ENSG00000197969.7	1771.18180	2358.17370	-0.41300	3.19760	2.51400	HepG2	GPKOW
VPS13A	ENSG00000197969.7	4350.16070	3238.67410	0.42560	3.51980	2.42820	HepG2	HDGF
VPS13A	ENSG00000197969.7	4403.13200	2851.55050	0.62670	3.60510	2.00180	HepG2	HLTF
VPS13A	ENSG00000197969.7	704.92140	2282.96310	-1.69540	54.03060	51.95310	HepG2	HNRNPA1
VPS13A	ENSG00000197969.7	3622.51900	2698.59480	0.42470	8.21400	6.76210	HepG2	HNRNPA2B1
VPS13A	ENSG00000197969.7	1735.52430	2539.33250	-0.54910	7.29360	6.20980	HepG2	HNRNPC
VPS13A	ENSG00000197969.7	3979.30560	2604.49880	0.61140	8.77050	7.57890	HepG2	HNRNPK
VPS13A	ENSG00000197969.7	2005.79290	2675.10590	-0.41540	9.08460	7.93010	HepG2	HNRNPL
VPS13A	ENSG00000197969.7	3501.35400	2250.44670	0.63760	8.56250	7.52030	HepG2	HNRNPLL
VPS13A	ENSG00000197969.7	1511.41470	2258.50060	-0.57950	8.74440	7.21480	HepG2	HNRNPM
VPS13A	ENSG00000197969.7	2080.94450	2460.38990	-0.24160	2.26320	1.60560	HepG2	IGF2BP1
VPS13A	ENSG00000197969.7	2214.21870	2576.70550	-0.21870	3.56040	2.73860	HepG2	ILF2
VPS13A	ENSG00000197969.7	4445.10930	2629.84930	0.75710	8.07550	6.27960	HepG2	KHSRP
VPS13A	ENSG00000197969.7	1976.58840	2773.77460	-0.48880	4.64480	3.80110	HepG2	MAGOH
VPS13A	ENSG00000197969.7	1379.14660	2789.31580	-1.01610	15.34780	13.95250	HepG2	MATR3
VPS13A	ENSG00000197969.7	3612.53230	2295.11920	0.65430	4.88950	3.57730	HepG2	MTPAP
VPS13A	ENSG00000197969.7	5484.76990	3869.70630	0.50310	3.68780	2.04030	HepG2	NKRF
VPS13A	ENSG00000197969.7	4165.16030	2459.98920	0.75960	28.31080	26.71510	HepG2	PCBP1
VPS13A	ENSG00000197969.7	1165.17000	1648.40510	-0.50050	6.78940	4.91950	HepG2	PKM
VPS13A	ENSG00000197969.7	1874.53720	2249.91770	-0.26330	2.92100	2.16630	HepG2	PPIL4
VPS13A	ENSG00000197969.7	1812.97250	2126.00970	-0.22980	2.61990	1.86440	HepG2	PRPF4
VPS13A	ENSG00000197969.7	3902.79880	2948.38350	0.40450	4.40890	3.57240	HepG2	PUM2
VPS13A	ENSG00000197969.7	1826.63390	3454.98810	-0.91950	14.49500	13.27910	HepG2	PUS1
VPS13A	ENSG00000197969.7	4145.58540	2710.94800	0.61270	13.81710	12.57590	HepG2	QKI
VPS13A	ENSG00000197969.7	4347.11910	2721.32910	0.67560	3.79940	2.97770	HepG2	RAVER1
VPS13A	ENSG00000197969.7	5125.50720	3861.54630	0.40840	6.38900	5.15340	HepG2	RBM15
VPS13A	ENSG00000197969.7	3010.45310	3711.92620	-0.30220	3.64660	3.07390	HepG2	RBM22
VPS13A	ENSG00000197969.7	4393.87550	2460.36310	0.83650	13.18730	11.77980	HepG2	RBM25
VPS13A	ENSG00000197969.7	1457.06590	2323.30760	-0.67310	2.66340	1.62660	HepG2	RCC2
VPS13A	ENSG00000197969.7	1718.53850	2785.74570	-0.69690	19.67040	18.48310	HepG2	NELFE
VPS13A	ENSG00000197969.7	2159.40070	2594.55030	-0.26490	3.62640	2.93320	HepG2	RECQL
VPS13A	ENSG00000197969.7	3239.56920	2691.62090	0.26720	2.04190	1.44420	HepG2	RPLP0
VPS13A	ENSG00000197969.7	1186.27020	1939.50360	-0.70930	11.69820	10.54110	HepG2	RPS19
VPS13A	ENSG00000197969.7	1997.55880	1509.27650	0.40430	1.99460	1.31630	HepG2	RRP9
VPS13A	ENSG00000197969.7	1742.02490	2246.46440	-0.36690	6.89370	5.94410	HepG2	SAFB2
VPS13A	ENSG00000197969.7	1846.22900	4419.05680	-1.25920	20.04290	18.18220	HepG2	SF3A3
VPS13A	ENSG00000197969.7	3148.66880	2227.50930	0.49920	6.09000	5.07820	HepG2	SF3B1
VPS13A	ENSG00000197969.7	3669.46150	2606.07910	0.49360	12.17910	11.07730	HepG2	SF3B4
VPS13A	ENSG00000197969.7	3495.81380	2664.86480	0.39150	3.21400	2.46710	HepG2	SLBP
VPS13A	ENSG00000197969.7	1775.73900	2619.79870	-0.56100	18.33870	16.90470	HepG2	SMN1
VPS13A	ENSG00000197969.7	1305.75360	2720.18560	-1.05880	45.27520	43.86990	HepG2	SRSF1
VPS13A	ENSG00000197969.7	3405.39880	2744.22020	0.31130	3.40210	2.72010	HepG2	SRSF5
VPS13A	ENSG00000197969.7	6226.66700	2213.01870	1.49230	121.69630	119.23510	HepG2	SRSF9
VPS13A	ENSG00000197969.7	1096.74960	3640.20790	-1.73080	111.05290	109.07650	HepG2	SSB
VPS13A	ENSG00000197969.7	5275.39020	2542.97390	1.05270	9.26530	7.14780	HepG2	SUB1
VPS13A	ENSG00000197969.7	3925.93720	3121.06710	0.33090	6.86350	5.96070	HepG2	SUCLG1
VPS13A	ENSG00000197969.7	2738.88090	2210.36970	0.30920	3.09230	2.10330	HepG2	SUPT6H
VPS13A	ENSG00000197969.7	3071.67540	2193.43540	0.48570	5.71350	4.72700	HepG2	TARDBP
VPS13A	ENSG00000197969.7	2117.47190	1319.10120	0.68270	6.50730	5.09070	HepG2	TFIP11
VPS13A	ENSG00000197969.7	2800.48700	2246.62880	0.31780	3.45810	2.52750	HepG2	TIA1
VPS13A	ENSG00000197969.7	1339.35500	2451.28300	-0.87200	21.47330	20.32400	HepG2	TIAL1
VPS13A	ENSG00000197969.7	1779.64030	2473.02690	-0.47470	10.11780	9.14370	HepG2	TRIM56
VPS13A	ENSG00000197969.7	3798.08770	2715.26620	0.48410	6.94790	5.46430	HepG2	TUFM
VPS13A	ENSG00000197969.7	2128.73060	3706.56050	-0.80010	2.27780	1.39390	HepG2	U2AF2
VPS13A	ENSG00000197969.7	8269.08820	2873.92760	1.52460	38.83480	35.91870	HepG2	UBE2L3
VPS13A	ENSG00000197969.7	5088.03310	4028.18820	0.33690	4.19930	2.94140	HepG2	UTP18
VPS13A	ENSG00000197969.7	2349.05710	3783.66520	-0.68770	24.30590	22.79450	HepG2	UTP3
VPS13A	ENSG00000197969.7	4215.99440	2674.91760	0.65630	5.43280	3.65640	HepG2	XRCC5
VPS13A	ENSG00000197969.7	519.21740	1937.03630	-1.89940	8.53870	7.28010	HepG2	XRN2
VPS13A	ENSG00000197969.7	1682.77330	2098.10860	-0.31820	5.37970	4.49290	HepG2	ZC3H8
VPS13A	ENSG00000197969.7	3373.08980	4310.17910	-0.35370	9.78810	8.91720	HepG2	ZNF622
VPS13A	ENSG00000197969.7	4429.21490	2717.70660	0.70460	6.62310	4.50450	HepG2	ZRANB2
VPS13A	ENSG00000197969.7	1475.77080	2465.73670	-0.74060	21.91530	20.42680	K562	AGGF1
VPS13A	ENSG00000197969.7	1881.99590	2709.29910	-0.52570	7.02240	5.27650	K562	AKAP8
VPS13A	ENSG00000197969.7	1687.89750	2565.66830	-0.60410	8.83630	7.59570	K562	AKAP8L
VPS13A	ENSG00000197969.7	1419.51810	2654.11670	-0.90280	16.79960	15.51460	K562	AQR
VPS13A	ENSG00000197969.7	2039.75970	2691.92330	-0.40020	6.26430	4.81890	K562	ATP5C1
VPS13A	ENSG00000197969.7	1319.97330	1620.94480	-0.29630	3.63320	2.52600	K562	BCLAF1
VPS13A	ENSG00000197969.7	1201.12540	1535.85770	-0.35470	2.65690	1.80270	K562	BOP1
VPS13A	ENSG00000197969.7	2070.65810	2946.82880	-0.50910	8.48460	6.41280	K562	CCDC124
VPS13A	ENSG00000197969.7	2261.25990	2843.98310	-0.33080	4.71940	3.24770	K562	CPEB4
VPS13A	ENSG00000197969.7	1063.69210	1632.96300	-0.61840	8.94810	7.52060	K562	CPSF6
VPS13A	ENSG00000197969.7	939.68790	1229.72810	-0.38810	4.13090	2.80360	K562	CSTF2
VPS13A	ENSG00000197969.7	1335.83220	1640.76010	-0.29660	2.54360	1.54630	K562	DDX3X
VPS13A	ENSG00000197969.7	2378.69760	2942.94600	-0.30710	4.78150	3.95840	K562	DDX47
VPS13A	ENSG00000197969.7	1360.31080	1663.52660	-0.29030	2.95860	1.59210	K562	DDX6
VPS13A	ENSG00000197969.7	2204.66620	2761.10950	-0.32470	4.78290	3.58040	K562	DKC1
VPS13A	ENSG00000197969.7	950.74940	1404.80640	-0.56320	4.63350	3.43680	K562	EFTUD2
VPS13A	ENSG00000197969.7	1626.56110	2031.92660	-0.32100	3.98380	3.14550	K562	EIF2S2
VPS13A	ENSG00000197969.7	1274.88050	1578.81340	-0.30850	3.23260	2.37540	K562	EIF3G
VPS13A	ENSG00000197969.7	1032.41480	1714.20990	-0.73150	10.87780	9.22830	K562	EIF4A3
VPS13A	ENSG00000197969.7	1152.80780	1905.92680	-0.72530	10.70890	8.92020	K562	FIP1L1
VPS13A	ENSG00000197969.7	1272.64490	1661.68380	-0.38480	3.28510	2.34840	K562	FMR1
VPS13A	ENSG00000197969.7	1091.11010	1408.50620	-0.36840	2.64140	1.74890	K562	FTO
VPS13A	ENSG00000197969.7	1279.66450	1782.70970	-0.47830	7.60270	6.66540	K562	FXR1
VPS13A	ENSG00000197969.7	2727.10820	1869.59080	0.54450	4.30540	3.38040	K562	G3BP2
VPS13A	ENSG00000197969.7	1145.52790	1559.00230	-0.44460	4.49510	3.48750	K562	GPKOW
VPS13A	ENSG00000197969.7	1390.18330	2707.86990	-0.96190	21.69990	19.47400	K562	GRSF1
VPS13A	ENSG00000197969.7	819.72280	1347.71180	-0.71730	7.69350	6.74490	K562	HNRNPC
VPS13A	ENSG00000197969.7	863.95570	1203.29670	-0.47800	4.13360	2.70680	K562	HNRNPF
VPS13A	ENSG00000197969.7	1534.17760	2016.24400	-0.39420	3.20920	1.86930	K562	HNRNPK
VPS13A	ENSG00000197969.7	1901.55330	2659.58940	-0.48400	6.43340	4.75800	K562	HNRNPL
VPS13A	ENSG00000197969.7	675.07770	1567.60500	-1.21540	19.69180	16.81220	K562	HNRNPM
VPS13A	ENSG00000197969.7	1658.75970	2584.09810	-0.63960	9.04510	7.62170	K562	HSPD1
VPS13A	ENSG00000197969.7	2120.19810	2722.96430	-0.36100	4.31960	3.25810	K562	KIF1C
VPS13A	ENSG00000197969.7	1370.59750	2121.42140	-0.63020	9.56170	7.94090	K562	MAGOH
VPS13A	ENSG00000197969.7	1835.59100	2606.42600	-0.50580	7.05460	5.01930	K562	MAK16
VPS13A	ENSG00000197969.7	1305.20700	2117.22600	-0.69790	12.01110	9.96310	K562	MATR3
VPS13A	ENSG00000197969.7	2008.37150	3050.38710	-0.60300	10.55040	8.57420	K562	MBNL1
VPS13A	ENSG00000197969.7	1197.02370	1521.79210	-0.34630	3.06270	2.13950	K562	METAP2
VPS13A	ENSG00000197969.7	1665.02280	1952.25230	-0.22960	2.71870	1.91620	K562	MTPAP
VPS13A	ENSG00000197969.7	954.53880	1383.58360	-0.53550	4.06450	2.42590	K562	NONO
VPS13A	ENSG00000197969.7	1916.57480	2169.12520	-0.17860	2.44420	1.73860	K562	NSUN2
VPS13A	ENSG00000197969.7	934.38500	1326.62590	-0.50570	4.39000	2.39620	K562	NUSAP1
VPS13A	ENSG00000197969.7	965.30880	1315.62250	-0.44670	3.92870	2.18910	K562	PHF6
VPS13A	ENSG00000197969.7	1564.69550	1287.37560	0.28130	2.52700	1.76430	K562	POLR2G
VPS13A	ENSG00000197969.7	1081.86000	2163.53610	-0.99990	18.90140	16.07060	K562	PPIG
VPS13A	ENSG00000197969.7	715.29590	1367.03200	-0.93440	11.46600	9.93160	K562	PRPF8
VPS13A	ENSG00000197969.7	654.31940	1208.30600	-0.88490	7.89150	6.20580	K562	PSIP1
VPS13A	ENSG00000197969.7	1470.93460	2061.04060	-0.48660	6.49990	5.51640	K562	PTBP1
VPS13A	ENSG00000197969.7	3120.83330	4253.00660	-0.44660	5.34540	4.21590	K562	PUF60
VPS13A	ENSG00000197969.7	3482.24180	4432.38910	-0.34810	5.00810	3.70150	K562	PUM2
VPS13A	ENSG00000197969.7	1605.51850	2544.74330	-0.66450	9.55960	8.59880	K562	PUS1
VPS13A	ENSG00000197969.7	1630.18190	2479.21680	-0.60490	7.18200	6.25720	K562	RBM15
VPS13A	ENSG00000197969.7	1195.05630	1976.68060	-0.72600	10.88650	9.05540	K562	RBM22
VPS13A	ENSG00000197969.7	667.06630	1102.13900	-0.72440	8.54140	6.79770	K562	RCC2
VPS13A	ENSG00000197969.7	1465.37040	1899.67570	-0.37450	3.52000	1.59270	K562	RECQL
VPS13A	ENSG00000197969.7	764.06730	1392.65630	-0.86610	9.18190	7.68000	K562	RPS19
VPS13A	ENSG00000197969.7	1631.78240	1945.06030	-0.25340	2.20260	1.44130	K562	SF3B4
VPS13A	ENSG00000197969.7	719.28560	1044.82760	-0.53860	5.09020	3.57350	K562	SRFBP1
VPS13A	ENSG00000197969.7	1376.45330	2020.42710	-0.55370	7.86500	6.68210	K562	SRSF1
VPS13A	ENSG00000197969.7	1497.01460	1907.94340	-0.34990	2.84420	1.77770	K562	SRSF5
VPS13A	ENSG00000197969.7	1228.64060	2044.97610	-0.73500	8.63560	7.29540	K562	TARDBP
VPS13A	ENSG00000197969.7	1390.03680	1972.56520	-0.50490	6.39970	5.07910	K562	TIA1
VPS13A	ENSG00000197969.7	899.60340	1162.22270	-0.36950	2.38710	1.52260	K562	TIAL1
VPS13A	ENSG00000197969.7	814.04420	1234.39470	-0.60060	6.50370	4.91190	K562	TRIM56
VPS13A	ENSG00000197969.7	1382.42840	1872.45570	-0.43770	5.46090	4.33680	K562	U2AF2
VPS13A	ENSG00000197969.7	1988.98810	2299.96960	-0.20960	2.61260	1.91490	K562	UPF1
VPS13A	ENSG00000197969.7	2349.73210	2989.68430	-0.34750	3.34800	2.38720	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for VPS13A is not available on ENCORE database.

5 RBPs can affect the splicing of VPS13A :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	VPS13A	ENSG00000197969.7	chr9	+	79856562	79856640	79853187	79853302	79862174	79862311	0.31700	0.00015	0.02937	included	K562	MATR3
SE	VPS13A	ENSG00000197969.7	chr9	+	79824338	79824448	79820893	79820995	79825531	79825591	-0.12500	0.00040	0.01523	excluded	K562	AKAP8L
SE	VPS13A	ENSG00000197969.7	chr9	+	80004866	80005058	79996891	79997003	80018151	80018237	-0.19100	0.00031	0.03505	excluded	HepG2	SRSF7
SE	VPS13A	ENSG00000197969.7	chr9	+	79824338	79824448	79820893	79820995	79825531	79825591	-0.06200	0.00761	0.08532	excluded	K562	PUS1
SE	VPS13A	ENSG00000197969.7	chr9	+	79824338	79824448	79820893	79820995	79825531	79825591	-0.09500	0.00090	0.03156	excluded	K562	UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VPS13A

General Information

Functions

Localization

Domains (AlphaFold: VPS13A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VPS13A is not avaliable on ENCORE database.

36 proteins are bound to VPS13A RNA:

eCLIP assay for VPS13A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VPS13A is not available on ENCORE database.

134 RBPs can affect the gene expression of VPS13A :

The Knockdown/knockout RNA-Seq assay for VPS13A is not available on ENCORE database.

5 RBPs can affect the splicing of VPS13A :

The Knockdown/knockout RNA-Seq assay for VPS13A is not avaliable on ENCORE database.