HMGB1

General Information

Gene Name       : HMGB1
Gene ID             : ENSG00000189403.14
Essential Gene : Yes

Functions

Localization(RBPImage: HMGB1)

Domains (AlphaFold: HMGB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMGB1ENSG00000189403.141001.141076.041038.59ENCSR000AEF
HepG2HMGB1ENSG00000189403.14394.47742.98568.73ENCSR985KAT
K562HMGB1ENSG00000189403.14833.23863.62848.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    HMGB1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Cytosolic
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for HMGB1 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • HMGB1 RNA is bound by 28 proteins.  







    eCLIP assay for HMGB1 is not avaliable on ENCORE database.





    28 proteins are bound to HMGB1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr133103429231034334-3'-UTR,intron-Distal6.3846620.01254K562FAM120A
    chr133103565431035717-3'-UTR,CDS,intron-Distal,intron-Proximal3.9011010.83729K562SF3B4
    chr133103552631035566-3'-UTR,CDS,intron-Distal,intron-Proximal6.4096221.87998K562ZNF622
    chr133103433431034380-3'-UTR,intron-Distal5.5157318.42797K562FAM120A
    chr133103471731034783-3'-UTR,intron-Distal4.192484.20872K562IGF2BP1
    chr133103782131037831-3'-UTR,5'-UTR,intron-Distal5.8872314.39302K562UCHL5
    chr133103410831034181-3'-UTR,intron-Distal3.2732110.43380K562UPF1
    chr133103552531035561-3'-UTR,CDS,intron-Distal,intron-Proximal4.2836410.14987K562AGGF1
    chr133103781131037831-3'-UTR,5'-UTR,CDS,intron-Distal3.581818.24814K562DDX3X
    chr133103547931035565-3'-UTR,CDS,intron-Distal,intron-Proximal3.174819.74235K562CPSF6
    chr133103546931035557-3'-UTR,CDS,intron-Distal,intron-Proximal3.6517012.70327K562SRSF1
    chr133103577731035833-3'-UTR,CDS,intron-Distal,intron-Proximal3.381634.57751HepG2U2AF2
    chr133103546931035567-3'-UTR,CDS,intron-Distal,intron-Proximal3.914964.16859K562SRSF7
    chr133103405831034099-3'-UTR,intron-Distal5.377589.11946K562FAM120A
    chr133103429831034384-3'-UTR,intron-Distal3.6994311.90104K562UPF1
    chr133103564631035751-3'-UTR,CDS,intron-Distal,intron-Proximal3.8655014.84134HepG2U2AF2
    chr133103547331035526-3'-UTR,CDS,intron-Distal5.5224020.25042K562ZNF622
    chr133103405731034101-3'-UTR,intron-Distal3.6776510.16051K562UPF1
    chr133103548831035558-3'-UTR,CDS,intron-Distal,intron-Proximal3.163125.01555K562MTPAP
    chr133103546931035561-3'-UTR,CDS,intron-Distal,intron-Proximal4.9608828.89645K562UCHL5
    chr133103405731034103-3'-UTR,intron-Distal5.376195.25980HepG2SUB1
    chr133103565831035728-3'-UTR,CDS,intron-Distal,intron-Proximal4.3298920.57321K562AQR
    chr133103564231035764-3'-UTR,CDS,intron-Distal,intron-Proximal4.652284.92499HepG2AQR
    chr133103571731035741-3'-UTR,intron-Distal,intron-Proximal4.170014.69223K562SF3B4
    chr133103564631035724-3'-UTR,CDS,intron-Distal,intron-Proximal3.955794.60541K562U2AF1
    chr133103565031035706-3'-UTR,CDS,intron-Distal,intron-Proximal5.056137.21051K562PRPF8
    chr133103547531035525-3'-UTR,CDS,intron-Distal5.1076215.83031K562AGGF1
    chr133103548231035560-3'-UTR,CDS,intron-Distal,intron-Proximal4.702375.10317K562TRA2A
    chr133103418131034254-3'-UTR,intron-Distal3.8845218.22241K562UPF1
    chr133103564531035736-3'-UTR,CDS,intron-Distal,intron-Proximal5.6551112.98350K562U2AF2
    chr133103933631039427-5'-UTR,intron-Distal,intron-Proximal5.204024.28089HepG2FAM120A
    chr133119147731191672-5'-UTR,intron-Distal3.995673.72434HepG2NCBP2
    chr133103989331039935-5'-UTR,intron-Distal3.697547.50982HepG2AQR
    chr133103993231039970-5'-UTR,intron-Distal4.8934712.91898K562UCHL5
    chr133103991531039957-5'-UTR,intron-Distal3.987556.29405HepG2PRPF8
    chr133103993131039965-5'-UTR,intron-Distal3.348636.96541K562DDX3X
    chr133103990531039950-5'-UTR,intron-Distal4.775676.00679K562AGGF1
    chr133103999631040069-5'-UTR,intron-Distal,intron-Proximal4.1045823.07771K562DDX3X
    chr133103935031039410-5'-UTR,intron-Distal,intron-Proximal4.040313.19526HepG2CSTF2T
    chr133103748231037490-CDS,intron-Distal,intron-Proximal3.249816.71555HepG2GRWD1
    chr133103766731037695-CDS,intron-Distal,intron-Proximal3.0871212.68031HepG2BCLAF1
    chr133103741031037467-CDS,intron-Distal,intron-Proximal3.758548.73356HepG2GRWD1
    chr133103770931037754-CDS,intron-Distal3.507523.80299HepG2GRWD1
    chr133103766931037698-CDS,intron-Distal3.698678.11148HepG2GRWD1
    chr133103766731037669-CDS,intron-Distal,intron-Proximal3.477266.90893HepG2GRWD1
    chr133103669131036756-CDS,intron-Distal4.526884.70478HepG2BCLAF1
    chr133103746731037482-CDS,intron-Distal,intron-Proximal3.247266.95311HepG2GRWD1
    chr133103728031037356-CDS,intron-Distal,intron-Proximal3.771155.30069HepG2AQR
    chr133103657431036677-CDS,intron-Distal,intron-Proximal4.8059121.42933K562AQR
    chr133103746831037490-CDS,intron-Distal,intron-Proximal3.1914115.03431HepG2BCLAF1
    chr133103773831037766-CDS,intron-Distal3.3693710.65712K562YBX3
    chr133103742331037469-CDS,intron-Distal,intron-Proximal3.6954618.80167K562RPS3
    chr133103741431037468-CDS,intron-Distal,intron-Proximal3.8593412.27793HepG2BCLAF1
    chr133103654731036598-intron-Distal,intron-Proximal3.788114.23459K562PRPF8
    chr133103952831039594-intron-Distal3.913335.86179K562XRN2
    chr133103879731038881-intron-Distal3.999903.58858HepG2NCBP2
    chr133118474831184793-intron-Distal4.128813.83958HepG2QKI
    chr133103654831036643-intron-Distal,intron-Proximal3.316876.34474K562EFTUD2
    chr133103727031037333-intron-Distal,intron-Proximal4.234825.97994K562AQR
    chr133103663331036671-intron-Distal,intron-Proximal3.446393.50696K562BUD13
    chr133103985431039893-intron-Distal3.528433.51594HepG2AQR
    chr133118464931184748-intron-Distal5.123754.85866HepG2QKI
    chr133103883231038869-intron-Distal5.9326513.30406K562AGGF1
    chr133103663431036674-intron-Distal,intron-Proximal4.533784.37348HepG2BCLAF1
    chr133103954031039604-intron-Distal4.493755.15063HepG2CSTF2T
    chr133103987431039915-intron-Distal3.879397.13280HepG2PRPF8
    chr133103906931039109-intron-Distal4.831186.53047K562AGGF1
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for HMGB1 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for HMGB1 is not available on ENCORE database.

    • 150 RBPs can affect the levels of HMGB1.  








    The Knockdown/knockout RNA-Seq assay for HMGB1 is not available on ENCORE database.





    150 RBPs can affect the gene expression of HMGB1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    HMGB1ENSG00000189403.103744.621304530.34680-0.274805.237904.45390HepG2ACO1
    HMGB1ENSG00000189403.103968.737905488.80810-0.467803.974503.35410HepG2AKAP1
    HMGB1ENSG00000189403.102702.775103421.84900-0.340302.355101.39050HepG2AKAP8
    HMGB1ENSG00000189403.103255.637904551.96140-0.4835012.2199010.76390HepG2AKAP8L
    HMGB1ENSG00000189403.103550.913404541.64300-0.355002.916302.11160HepG2ASCC1
    HMGB1ENSG00000189403.104499.928307234.88530-0.6851026.5945024.86100HepG2AUH
    HMGB1ENSG00000189403.102760.199004931.50860-0.837309.705108.15090HepG2BCLAF1
    HMGB1ENSG00000189403.102150.808706515.33970-1.5990058.7182056.68830HepG2BOP1
    HMGB1ENSG00000189403.102807.893204893.26250-0.8013010.110407.90910HepG2BUD13
    HMGB1ENSG00000189403.104307.533406273.28570-0.5424011.098209.71770HepG2CALR
    HMGB1ENSG00000189403.103666.764708487.57040-1.210806.721105.18230HepG2CCAR1
    HMGB1ENSG00000189403.103047.799104314.83630-0.501505.526504.45540HepG2CIRBP
    HMGB1ENSG00000189403.102786.437304529.75880-0.7010026.4483024.87020HepG2CKAP4
    HMGB1ENSG00000189403.102136.174702877.95060-0.430002.227301.54660HepG2CNOT7
    HMGB1ENSG00000189403.103768.029605981.48370-0.6667010.612109.35380HepG2CPSF6
    HMGB1ENSG00000189403.103618.655705378.77570-0.571805.155303.67910HepG2CPSF7
    HMGB1ENSG00000189403.102367.990404806.16080-1.0212040.6662037.30670HepG2YBX3
    HMGB1ENSG00000189403.104583.070107665.01200-0.7420028.0997026.50130HepG2CELF1
    HMGB1ENSG00000189403.105599.710408242.70510-0.5578018.4196016.81370HepG2DAZAP1
    HMGB1ENSG00000189403.103613.295604190.10400-0.213703.475902.55390HepG2DDX19B
    HMGB1ENSG00000189403.101345.240304141.32170-1.6222015.9935014.52230HepG2DDX21
    HMGB1ENSG00000189403.102261.196004049.77140-0.840808.246706.68770HepG2DDX24
    HMGB1ENSG00000189403.103583.707305258.11020-0.553106.112105.21710HepG2DDX3X
    HMGB1ENSG00000189403.102842.123603552.64510-0.321902.947501.61080HepG2DDX47
    HMGB1ENSG00000189403.102142.661705579.30610-1.3807020.9992019.16540HepG2DDX55
    HMGB1ENSG00000189403.103663.020406792.39860-0.890907.010805.49480HepG2DDX59
    HMGB1ENSG00000189403.104586.421105743.33290-0.324502.956401.91400HepG2DDX5
    HMGB1ENSG00000189403.103036.511804516.24320-0.572705.751904.88990HepG2DDX6
    HMGB1ENSG00000189403.102993.800504551.72650-0.604409.703607.99210HepG2DHX30
    HMGB1ENSG00000189403.103566.558504334.41680-0.281304.653303.81560HepG2DKC1
    HMGB1ENSG00000189403.102546.923404719.24970-0.8898032.2833030.17580HepG2DNAJC21
    HMGB1ENSG00000189403.102758.060304677.63540-0.7621038.9146036.72630HepG2DNAJC2
    HMGB1ENSG00000189403.102739.267003811.16200-0.476403.556702.28930HepG2AGO1
    HMGB1ENSG00000189403.102096.437104342.15200-1.0505019.3358017.86720HepG2EIF2S1
    HMGB1ENSG00000189403.103074.744104183.89860-0.444404.177203.08250HepG2EIF3D
    HMGB1ENSG00000189403.102363.440004798.86790-1.0218016.1563014.62370HepG2EIF4A3
    HMGB1ENSG00000189403.106782.026208131.12870-0.261705.072403.99530HepG2EIF4G1
    HMGB1ENSG00000189403.104824.574107789.24560-0.691108.598907.19450HepG2EIF4G2
    HMGB1ENSG00000189403.105481.345808306.53630-0.5997020.5096019.13020HepG2ETF1
    HMGB1ENSG00000189403.102717.172903739.11240-0.460606.818204.95160HepG2FAM120A
    HMGB1ENSG00000189403.103326.915704644.25620-0.481303.838102.35510HepG2FKBP4
    HMGB1ENSG00000189403.103458.135005991.63860-0.793003.855902.65710HepG2FTO
    HMGB1ENSG00000189403.103785.363703001.862000.334502.382501.65160HepG2FUBP3
    HMGB1ENSG00000189403.103674.098905454.62990-0.570104.387002.99810HepG2FUS
    HMGB1ENSG00000189403.102683.023804491.19230-0.743209.686208.47940HepG2G3BP1
    HMGB1ENSG00000189403.102807.918806780.60630-1.2719027.6900025.90650HepG2GPKOW
    HMGB1ENSG00000189403.101869.417202663.93250-0.511003.331902.10540HepG2GRSF1
    HMGB1ENSG00000189403.103316.193304325.42480-0.383305.475404.15010HepG2HDGF
    HMGB1ENSG00000189403.103544.662205227.83780-0.560603.299101.77340HepG2HLTF
    HMGB1ENSG00000189403.102678.114204764.46200-0.8311018.4663017.03670HepG2HNRNPA1
    HMGB1ENSG00000189403.105385.562007574.83090-0.4921014.5927012.79500HepG2HNRNPA2B1
    HMGB1ENSG00000189403.102988.023505299.60250-0.8267017.8032016.20310HepG2HNRNPC
    HMGB1ENSG00000189403.104053.842906812.80000-0.7490029.4304027.48270HepG2HNRNPF
    HMGB1ENSG00000189403.105299.232407508.75730-0.5028017.9504016.36830HepG2HNRNPL
    HMGB1ENSG00000189403.102563.389206470.84590-1.3359036.0082034.14070HepG2HNRNPLL
    HMGB1ENSG00000189403.104285.860505264.56330-0.296705.831204.97880HepG2HNRNPU
    HMGB1ENSG00000189403.103948.039506708.71330-0.7649019.5173017.78940HepG2IGF2BP1
    HMGB1ENSG00000189403.102405.092904565.35710-0.9246016.1248014.66000HepG2IGF2BP2
    HMGB1ENSG00000189403.103943.857005377.57380-0.4473016.8084015.18050HepG2ILF2
    HMGB1ENSG00000189403.103279.270504141.55170-0.336805.526204.09960HepG2KIF1C
    HMGB1ENSG00000189403.106267.983608956.14390-0.514902.250001.50880HepG2LARP4
    HMGB1ENSG00000189403.101143.216605337.85610-2.2232039.5300037.09250HepG2MSI2
    HMGB1ENSG00000189403.103856.068206599.14080-0.775107.368405.75290HepG2MTPAP
    HMGB1ENSG00000189403.103102.497304481.79440-0.530604.946503.33270HepG2NAA15
    HMGB1ENSG00000189403.105692.194908173.39940-0.5220010.297208.85870HepG2NOL12
    HMGB1ENSG00000189403.104334.444105737.54910-0.404604.569303.61470HepG2NSUN2
    HMGB1ENSG00000189403.102693.472304439.77200-0.721009.708008.37450HepG2PABPC4
    HMGB1ENSG00000189403.103265.025404554.36160-0.4802010.760809.69080HepG2PCBP1
    HMGB1ENSG00000189403.103437.307605163.61560-0.587104.302003.02460HepG2PCBP2
    HMGB1ENSG00000189403.101943.900104695.56640-1.2723060.1754056.96280HepG2PPIL4
    HMGB1ENSG00000189403.104427.911805360.23860-0.275704.604803.63360HepG2PRPF4
    HMGB1ENSG00000189403.102183.766604305.39560-0.9793011.8001010.29750HepG2PRPF8
    HMGB1ENSG00000189403.103776.814407801.96530-1.0467021.9885020.52150HepG2PUF60
    HMGB1ENSG00000189403.105771.418908281.82640-0.5210024.3583022.95550HepG2PUM1
    HMGB1ENSG00000189403.104133.080308275.96610-1.0017037.2215034.99220HepG2PUM2
    HMGB1ENSG00000189403.103401.294404614.51010-0.4401012.3021011.16150HepG2PUS1
    HMGB1ENSG00000189403.104102.943505018.90060-0.290703.809403.09290HepG2QKI
    HMGB1ENSG00000189403.104416.925706316.33090-0.516009.699108.22690HepG2RBM15
    HMGB1ENSG00000189403.103756.231806942.74400-0.8862035.2861033.83850HepG2RBM22
    HMGB1ENSG00000189403.103806.340004555.04280-0.259102.476401.83440HepG2RBM25
    HMGB1ENSG00000189403.106345.672305157.480500.299005.777205.04090HepG2NELFE
    HMGB1ENSG00000189403.105783.629704803.619300.267804.834504.04970HepG2RECQL
    HMGB1ENSG00000189403.102513.346407338.30340-1.5458056.9762054.85960HepG2RPLP0
    HMGB1ENSG00000189403.103032.546904894.80950-0.690705.515704.20500HepG2RPS10
    HMGB1ENSG00000189403.102248.117104071.00840-0.8567020.2287018.80290HepG2RPS19
    HMGB1ENSG00000189403.103596.020605437.63530-0.596607.809906.50930HepG2RPS2
    HMGB1ENSG00000189403.102312.256004259.06600-0.881209.936608.58170HepG2RRP9
    HMGB1ENSG00000189403.103682.392704688.31500-0.348406.288005.37600HepG2SAFB2
    HMGB1ENSG00000189403.103716.219506404.93330-0.7853015.5755014.04360HepG2SF3B1
    HMGB1ENSG00000189403.104110.100907480.24380-0.8639057.7135055.41000HepG2SLBP
    HMGB1ENSG00000189403.103756.238805080.65780-0.435702.895501.91490HepG2SMNDC1
    HMGB1ENSG00000189403.102635.840107126.58480-1.4349021.3426019.24970HepG2SNRNP70
    HMGB1ENSG00000189403.105041.504007841.60340-0.6373028.2181027.05530HepG2SRFBP1
    HMGB1ENSG00000189403.106944.387105036.078700.4634014.6785013.77310HepG2SRSF1
    HMGB1ENSG00000189403.105148.286807702.93960-0.5813021.1616019.64860HepG2SRSF5
    HMGB1ENSG00000189403.103561.239906693.17740-0.9103040.7072038.68840HepG2SRSF7
    HMGB1ENSG00000189403.103344.179804097.17140-0.293005.461004.73040HepG2SRSF9
    HMGB1ENSG00000189403.104037.567606808.42000-0.7538034.4840033.14000HepG2SSB
    HMGB1ENSG00000189403.106804.222508760.67670-0.3646011.6053010.47960HepG2SUCLG1
    HMGB1ENSG00000189403.102675.750504453.54690-0.735007.848906.32040HepG2SUPT6H
    HMGB1ENSG00000189403.102364.729405554.52270-1.2320016.6242015.21080HepG2SUPV3L1
    HMGB1ENSG00000189403.105867.506104526.795200.374206.693705.88740HepG2TAF15
    HMGB1ENSG00000189403.103479.563306306.73050-0.8580017.6987016.14190HepG2TARDBP
    HMGB1ENSG00000189403.102133.460403723.25130-0.803409.143307.54550HepG2TFIP11
    HMGB1ENSG00000189403.101685.807405115.43420-1.6014078.9499076.96820HepG2TIAL1
    HMGB1ENSG00000189403.103284.711605161.24050-0.6520023.5743022.12660HepG2TRIM56
    HMGB1ENSG00000189403.106078.641007621.69280-0.326402.171201.40300HepG2TUFM
    HMGB1ENSG00000189403.104097.391505641.04170-0.461303.936203.19210HepG2U2AF1
    HMGB1ENSG00000189403.102686.999004915.99530-0.871502.615701.65830HepG2U2AF2
    HMGB1ENSG00000189403.105049.517808067.11510-0.675909.630608.02660HepG2UBE2L3
    HMGB1ENSG00000189403.102031.730703281.50720-0.691607.726506.45870HepG2UCHL5
    HMGB1ENSG00000189403.103171.875004943.41910-0.6402023.9693022.31550HepG2UPF1
    HMGB1ENSG00000189403.103672.787005087.32090-0.470002.740701.74130HepG2UPF2
    HMGB1ENSG00000189403.104194.381605081.19450-0.276704.349503.07000HepG2UTP18
    HMGB1ENSG00000189403.102326.766904772.68730-1.0365056.6682054.49980HepG2UTP3
    HMGB1ENSG00000189403.101384.060005436.82430-1.97390238.03930235.33480HepG2ZNF622
    HMGB1ENSG00000189403.1013999.5395018091.48430-0.369904.069702.56180K562ABCF1
    HMGB1ENSG00000189403.1013478.0877010860.802300.311407.336806.47750K562AGGF1
    HMGB1ENSG00000189403.1014266.0927011934.263400.257402.363201.46610K562AKAP8
    HMGB1ENSG00000189403.1013183.0524011301.128400.222101.891301.34730K562AKAP8L
    HMGB1ENSG00000189403.1010769.2673015581.50980-0.532908.019007.10720K562AQR
    HMGB1ENSG00000189403.1014114.8923011857.550000.251303.555202.50800K562ATP5C1
    HMGB1ENSG00000189403.106487.515709340.64520-0.5259018.9801016.50570K562BCLAF1
    HMGB1ENSG00000189403.106343.3482010981.93270-0.791808.814507.20440K562BOP1
    HMGB1ENSG00000189403.109166.1957012601.67200-0.459204.748702.81950K562BUD13
    HMGB1ENSG00000189403.103527.329405244.99120-0.572407.606305.62980K562CCAR1
    HMGB1ENSG00000189403.108826.3842011230.48770-0.347503.706802.21390K562CIRBP
    HMGB1ENSG00000189403.108740.5278015036.62380-0.782706.087604.45640K562CNOT7
    HMGB1ENSG00000189403.1013609.2323016810.59400-0.304805.040403.51480K562CPEB4
    HMGB1ENSG00000189403.106062.4680011677.27480-0.9457017.4853015.49690K562CPSF6
    HMGB1ENSG00000189403.105048.153407086.27190-0.4893011.682109.32590K562CSTF2
    HMGB1ENSG00000189403.1020667.0749025397.75360-0.297402.942501.93870K562CELF1
    HMGB1ENSG00000189403.107970.8012010433.62580-0.388409.063206.87030K562DDX21
    HMGB1ENSG00000189403.105918.296907340.85210-0.310805.250302.81670K562DDX24
    HMGB1ENSG00000189403.105717.640906928.04880-0.277002.844301.78710K562DDX3X
    HMGB1ENSG00000189403.1010898.0364017397.27530-0.6748028.2623026.39120K562DDX47
    HMGB1ENSG00000189403.1015997.4207012161.003500.395508.677706.96050K562DKC1
    HMGB1ENSG00000189403.104718.733407285.79590-0.626705.149703.88310K562EFTUD2
    HMGB1ENSG00000189403.106203.103107609.98830-0.294905.264603.56910K562EIF2S1
    HMGB1ENSG00000189403.109460.5946012943.66740-0.452205.647504.67450K562EIF2S2
    HMGB1ENSG00000189403.103981.066505335.18460-0.422402.266101.36650K562EIF3A
    HMGB1ENSG00000189403.105601.086807238.14740-0.369904.164603.15800K562EIF4A3
    HMGB1ENSG00000189403.107132.217308937.31760-0.325503.972702.41770K562EXOSC5
    HMGB1ENSG00000189403.106594.179908770.96160-0.411503.892302.52750K562FKBP4
    HMGB1ENSG00000189403.106942.3230011880.71240-0.775109.894108.22500K562FMR1
    HMGB1ENSG00000189403.106181.7330010069.69850-0.7039010.627608.72630K562FTO
    HMGB1ENSG00000189403.109197.044507527.376700.288905.037204.25520K562FXR1
    HMGB1ENSG00000189403.109347.0216011319.39050-0.276204.088102.71000K562GLRX3
    HMGB1ENSG00000189403.105910.0321011149.18710-0.9157015.7919013.85420K562GPKOW
    HMGB1ENSG00000189403.1010499.1580017250.19370-0.716307.240606.00620K562GRSF1
    HMGB1ENSG00000189403.108249.3607010929.39660-0.405906.090204.53160K562HNRNPA1
    HMGB1ENSG00000189403.104096.8204010106.95220-1.3028031.2820029.34840K562HNRNPC
    HMGB1ENSG00000189403.106940.584009024.46480-0.378804.226302.78070K562HNRNPF
    HMGB1ENSG00000189403.1012731.1306015721.73950-0.304403.522402.31280K562HNRNPL
    HMGB1ENSG00000189403.1013228.2142010696.874600.306302.293901.45000K562HNRNPM
    HMGB1ENSG00000189403.109732.7962012103.16450-0.314505.054903.83450K562HNRNPU
    HMGB1ENSG00000189403.108024.7141010476.93370-0.384702.999901.91750K562IGF2BP2
    HMGB1ENSG00000189403.108470.4518010657.11340-0.331303.478502.10250K562IGF2BP3
    HMGB1ENSG00000189403.1015778.5171011993.422300.395603.067402.19560K562KIF1C
    HMGB1ENSG00000189403.104681.555109519.32470-1.0239015.1065012.76820K562KRR1
    HMGB1ENSG00000189403.108756.6662010990.36510-0.327804.002102.87740K562MATR3
    HMGB1ENSG00000189403.1016757.1683013435.648300.318603.761102.67410K562MBNL1
    HMGB1ENSG00000189403.104138.2621010882.73950-1.3949029.8805027.07180K562METAP2
    HMGB1ENSG00000189403.1016352.4621022019.83980-0.429302.999201.82080K562MSI2
    HMGB1ENSG00000189403.106838.5894011900.85360-0.7993044.3507041.85900K562MTPAP
    HMGB1ENSG00000189403.1013614.329009417.407600.531602.622401.76720K562NAA15
    HMGB1ENSG00000189403.108940.5170013222.96950-0.5646041.1270038.84610K562NSUN2
    HMGB1ENSG00000189403.109258.5046014445.81800-0.641805.016503.32530K562PABPC1
    HMGB1ENSG00000189403.108652.4704011368.24510-0.393803.633102.67860K562PCBP3
    HMGB1ENSG00000189403.107122.371008719.96590-0.292002.068101.37650K562POLR2G
    HMGB1ENSG00000189403.1019070.7390023490.49850-0.300705.056503.74190K562PUM2
    HMGB1ENSG00000189403.1018586.5719011207.824500.7297013.9402012.76640K562PUS1
    HMGB1ENSG00000189403.1015092.3614010920.165700.4667010.640709.50270K562RBM15
    HMGB1ENSG00000189403.106513.003508266.16330-0.343904.609103.32480K562RCC2
    HMGB1ENSG00000189403.105130.778707222.91540-0.493402.891602.05450K562RPS19
    HMGB1ENSG00000189403.106248.967007815.84430-0.322802.909701.88020K562RPS3
    HMGB1ENSG00000189403.109109.3295013047.61850-0.5184014.7332012.95570K562SF3A3
    HMGB1ENSG00000189403.106222.6431010602.31310-0.7688011.337409.28110K562SF3B1
    HMGB1ENSG00000189403.104260.098105777.37940-0.439505.133603.37830K562SLBP
    HMGB1ENSG00000189403.1010671.7517013367.55980-0.3249010.327808.64640K562SRPK2
    HMGB1ENSG00000189403.107392.346809905.22180-0.422205.049403.55100K562SRSF5
    HMGB1ENSG00000189403.107491.650809311.39110-0.313705.877904.15710K562SRSF7
    HMGB1ENSG00000189403.1012324.9181015606.39690-0.340602.938301.64480K562STAU1
    HMGB1ENSG00000189403.104423.979406866.45690-0.634204.531403.20540K562SUPV3L1
    HMGB1ENSG00000189403.1011277.240708746.167500.366605.257304.11580K562SYNCRIP
    HMGB1ENSG00000189403.104664.2637010615.51440-1.1865030.8917027.97260K562TARDBP
    HMGB1ENSG00000189403.107403.1653010239.75980-0.468007.989606.48610K562TIA1
    HMGB1ENSG00000189403.105350.963708715.96110-0.7039010.422308.50310K562TIAL1
    HMGB1ENSG00000189403.107231.701509258.00140-0.356403.099602.08550K562TRIM56
    HMGB1ENSG00000189403.1012019.7704015212.59810-0.339903.144001.64480K562TRIP6
    HMGB1ENSG00000189403.107723.801009200.24010-0.252402.828702.01620K562U2AF2
    HMGB1ENSG00000189403.105127.211207266.33830-0.503103.406002.26800K562UCHL5
    HMGB1ENSG00000189403.109861.7958014020.59080-0.5076019.2531017.54780K562UPF1
    HMGB1ENSG00000189403.1011526.0060015309.42940-0.409503.813602.39270K562UTP3
    HMGB1ENSG00000189403.108075.9151011996.98350-0.5710011.063509.25650K562WDR3
    HMGB1ENSG00000189403.1010532.6460012475.42440-0.244205.361804.22230K562WDR43
    HMGB1ENSG00000189403.105615.170807397.64800-0.397702.438901.32760K562XRN2
    HMGB1ENSG00000189403.1012676.6890017554.07720-0.469606.263004.87720K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for HMGB1 is not available on ENCORE database.





    6 RBPs can affect the splicing of HMGB1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEHMGB1ENSG00000189403.10chr13-3103577531035825310350313103567031036674310368490.075000.000170.00942includedK562TARDBP
    A3SSHMGB1ENSG00000189403.10chr13-310356323103582531035632310357433103667431036903-0.291000.000710.00510shorterK562AQR
    RIHMGB1ENSG00000189403.10chr13-3103766731038384310376673103783131038304310383840.235000.008020.07949includedHepG2PCBP1
    RIHMGB1ENSG00000189403.10chr13-3103766731038384310376673103783131038304310383840.178000.006900.06523includedHepG2QKI
    RIHMGB1ENSG00000189403.10chr13-3103766731038384310376673103783131038304310383840.187000.007310.06003includedHepG2TAF15
    RIHMGB1ENSG00000189403.10chr13-310376673103838431037667310378313103830431038384-0.322000.000060.01170excludedHepG2SRSF7

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for HMGB1 is not avaliable on ENCORE database.