TICRR

General Information

Gene Name : TICRR
Gene ID : ENSG00000140534.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TICRR)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TICRR	ENSG00000140534.13	9.32	11.43	10.38	ENCSR000AEF
HepG2	TICRR	ENSG00000140534.13	12.82	14.09	13.46	ENCSR985KAT
K562	TICRR	ENSG00000140534.13	13.88	14.78	14.33	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TICRR is not avaliable on ENCORE database.

Proteins bound to RNA

TICRR RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for TICRR is not avaliable on ENCORE database.

26 proteins are bound to TICRR RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	90159732	90159775	+	intron-Proximal	5.50797	24.69239	K562	AQR
chr15	90159724	90159732	+	CDS,intron-Proximal	4.74177	19.71370	K562	AQR
chr15	90171093	90171206	+	3'-UTR,intron-Distal	4.82047	12.56575	K562	UPF1
chr15	90129226	90129388	+	intron-Distal,intron-Proximal	4.30085	11.51837	K562	EFTUD2
chr15	90168735	90168809	+	CDS	5.62551	10.73550	K562	RBM15
chr15	90129132	90129260	+	CDS,intron-Distal,intron-Proximal	4.55968	9.44190	K562	PRPF8
chr15	90142706	90142821	+	intron-Distal,intron-Proximal	5.70636	9.41643	K562	AQR
chr15	90145207	90145347	+	intron-Distal,intron-Proximal	3.64744	9.20203	K562	KHSRP
chr15	90169089	90169156	+	intron-Proximal	5.15831	8.63033	K562	RBM15
chr15	90119394	90119464	+	CDS,intron-Distal	5.12404	8.05035	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 84 entries

eCLIP assay for TICRR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TICRR is not available on ENCORE database.
154 RBPs can affect the levels of TICRR.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TICRR is not available on ENCORE database.

154 RBPs can affect the gene expression of TICRR :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TICRR	ENSG00000140534.9	140.12420	1342.93300	-3.26060	196.17030	193.64790	HepG2	ZNF622
TICRR	ENSG00000140534.9	46.22570	789.78030	-4.09470	105.69220	103.29770	HepG2	BOP1
TICRR	ENSG00000140534.9	333.21290	1221.06380	-1.87360	74.69190	72.18730	HepG2	UPF1
TICRR	ENSG00000140534.9	75.96620	671.94880	-3.14490	72.20290	69.91260	HepG2	RPLP0
TICRR	ENSG00000140534.9	78.73270	767.65360	-3.28540	69.75570	67.40400	HepG2	SUPV3L1
TICRR	ENSG00000140534.9	131.35480	725.05570	-2.46460	63.14540	61.35190	HepG2	TIAL1
TICRR	ENSG00000140534.9	254.61760	915.96910	-1.84700	60.70130	58.56860	HepG2	CKAP4
TICRR	ENSG00000140534.9	86.22130	569.00980	-2.72230	57.36170	55.24440	HepG2	RPS19
TICRR	ENSG00000140534.9	61.06770	588.52330	-3.26860	56.96670	54.33770	HepG2	RRP9
TICRR	ENSG00000140534.9	1410.54570	2881.19490	-1.03040	41.52790	39.28960	K562	DDX47
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 185 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TICRR is not available on ENCORE database.

8 RBPs can affect the splicing of TICRR :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TICRR	ENSG00000140534.9	chr15	+	90169166	90169292	90166853	90169017	90170186	90171250	-0.20100	0.00000	0.00007	excluded	K562	AQR
SE	TICRR	ENSG00000140534.9	chr15	+	90146026	90146123	90144967	90145207	90149998	90150056	-0.19400	0.00000	0.00000	excluded	K562	AQR
SE	TICRR	ENSG00000140534.9	chr15	+	90146026	90146123	90144967	90145207	90149998	90150056	-0.11400	0.00016	0.00646	excluded	K562	AGGF1
SE	TICRR	ENSG00000140534.9	chr15	+	90169166	90169292	90166853	90169017	90170186	90171243	-0.20000	0.00020	0.03414	excluded	K562	RBM22
SE	TICRR	ENSG00000140534.9	chr15	+	90169166	90169292	90166853	90169017	90170186	90171250	-0.22800	0.00107	0.02387	excluded	K562	U2AF1
SE	TICRR	ENSG00000140534.9	chr15	+	90146026	90146123	90144967	90145207	90149998	90150056	-0.12600	0.00116	0.02267	excluded	K562	U2AF2
A3SS	TICRR	ENSG00000140534.9	chr15	+	90128924	90129173	90128938	90129173	90127516	90127758	0.07900	0.00129	0.00874	longer	K562	AQR
SE	TICRR	ENSG00000140534.9	chr15	+	90169166	90169292	90166853	90169017	90170186	90171250	-0.16700	0.00186	0.06048	excluded	K562	TARDBP
A3SS	TICRR	ENSG00000140534.9	chr15	+	90145997	90146123	90146026	90146123	90144967	90145207	0.06500	0.00212	0.01356	longer	K562	AQR
SE	TICRR	ENSG00000140534.9	chr15	+	90146026	90146123	90144967	90145207	90149998	90150056	-0.05700	0.00314	0.04344	excluded	K562	PUS1

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TICRR

General Information

Functions

Localization

Domains (AlphaFold: TICRR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TICRR is not avaliable on ENCORE database.

26 proteins are bound to TICRR RNA:

eCLIP assay for TICRR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TICRR is not available on ENCORE database.

154 RBPs can affect the gene expression of TICRR :

The Knockdown/knockout RNA-Seq assay for TICRR is not available on ENCORE database.

8 RBPs can affect the splicing of TICRR :

The Knockdown/knockout RNA-Seq assay for TICRR is not avaliable on ENCORE database.