ITGB1

General Information

Gene Name : ITGB1
Gene ID : ENSG00000150093.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ITGB1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ITGB1	ENSG00000150093.18	7.96	6.58	7.27	ENCSR000AEF
HepG2	ITGB1	ENSG00000150093.18	153.62	236.72	195.17	ENCSR985KAT
K562	ITGB1	ENSG00000150093.18	104.35	100.27	102.31	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ITGB1 is not avaliable on ENCORE database.

Proteins bound to RNA

ITGB1 RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for ITGB1 is not avaliable on ENCORE database.

36 proteins are bound to ITGB1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	33247072	33247191	-	5'-UTR,intron-Distal,intron-Proximal	4.93118	400.00000	HepG2	DDX3X
chr10	33224418	33224473	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.99876	37.75758	K562	DDX3X
chr10	33247071	33247166	-	5'-UTR,intron-Distal,intron-Proximal	4.11626	30.22079	K562	DDX3X
chr10	33204896	33204979	-	intron-Distal	6.71209	27.73925	K562	EXOSC5
chr10	33224419	33224477	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.71932	24.92522	HepG2	DDX3X
chr10	33221482	33221528	-	3'-UTR,CDS,intron-Distal	4.38211	20.16010	K562	DDX3X
chr10	33214933	33215006	-	CDS,intron-Distal	3.54966	19.99422	HepG2	BCLAF1
chr10	33214799	33214853	-	CDS,intron-Distal,intron-Proximal	3.23444	18.53146	HepG2	BCLAF1
chr10	33215006	33215039	-	CDS,intron-Distal,intron-Proximal	4.25618	17.28671	HepG2	BCLAF1
chr10	33200877	33200951	-	CDS,intron-Distal	4.40161	17.10002	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 144 entries

eCLIP assay for ITGB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ITGB1 is not available on ENCORE database.
140 RBPs can affect the levels of ITGB1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ITGB1 is not available on ENCORE database.

140 RBPs can affect the gene expression of ITGB1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ITGB1	ENSG00000150093.14	26481.48800	10793.23610	1.29480	173.82540	171.44830	HepG2	ZNF622
ITGB1	ENSG00000150093.14	2397.89950	10240.40230	-2.09440	112.14730	109.39260	HepG2	HNRNPA1
ITGB1	ENSG00000150093.14	3777.97600	9050.48660	-1.26040	106.84190	103.64840	HepG2	DDX19B
ITGB1	ENSG00000150093.14	30475.63390	13122.41320	1.21550	79.52140	77.10790	HepG2	CELF1
ITGB1	ENSG00000150093.14	18872.62680	9922.01370	0.92750	62.75830	60.84490	HepG2	SRSF9
ITGB1	ENSG00000150093.14	2912.01170	11271.40390	-1.95260	61.89330	58.94170	HepG2	G3BP1
ITGB1	ENSG00000150093.14	5343.21790	9967.39210	-0.89950	56.82550	54.77020	HepG2	PUS1
ITGB1	ENSG00000150093.14	45212.07310	13775.35170	1.71450	47.69490	45.89800	HepG2	AKAP1
ITGB1	ENSG00000150093.14	27035.50550	15414.13100	0.81050	45.02460	43.15140	HepG2	ETF1
ITGB1	ENSG00000150093.14	16037.80840	9474.78170	0.75920	42.98860	41.04520	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 166 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ITGB1 is not available on ENCORE database.

7 RBPs can affect the splicing of ITGB1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ITGB1	ENSG00000150093.14	chr10	-	33211567	33211663			33211184	33211274	33212512	33212668	-0.09100	0.00000	0.00000	excluded	HepG2	U2AF1
SE	ITGB1	ENSG00000150093.14	chr10	-	33208812	33209060			33200813	33201052	33209172	33209313	-0.05600	0.00000	0.00000	excluded	K562	AQR
SE	ITGB1	ENSG00000150093.14	chr10	-	33242520	33242737			33224419	33224486	33247072	33247155	-0.08200	0.00000	0.00095	excluded	HepG2	NOL12
A3SS	ITGB1	ENSG00000150093.14	chr10	-	33209172	33209420			33209172	33209313	33211184	33211274	0.11800	0.00000	0.00000	longer	K562	AQR
MXE	ITGB1	ENSG00000150093.14	chr10	-	33208812	33209012	33209172	33209357	33200813	33201052	33211184	33211274	0.06500	0.00000	0.00000	1included	K562	AQR
MXE	ITGB1	ENSG00000150093.14	chr10	-	33208812	33209012	33209172	33209325	33200813	33201052	33211184	33211274	0.07700	0.00000	0.00000	1included	K562	AQR
MXE	ITGB1	ENSG00000150093.14	chr10	-	33221442	33221528	33224419	33224486	33218749	33218972	33247072	33247160	0.21700	0.00000	0.00000	1included	HepG2	U2AF2
MXE	ITGB1	ENSG00000150093.14	chr10	-	33211184	33211274	33211567	33211663	33209172	33209313	33212512	33212668	-0.09000	0.00000	0.00000	2included	HepG2	U2AF2
SE	ITGB1	ENSG00000150093.14	chr10	-	33211567	33211663			33211184	33211274	33212512	33212668	-0.07300	0.00009	0.00176	excluded	HepG2	U2AF2
SE	ITGB1	ENSG00000150093.14	chr10	-	33211567	33211663			33209172	33209313	33212512	33212668	0.07400	0.00260	0.09014	included	HepG2	SFPQ

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ITGB1

General Information

Functions

Localization

Domains (AlphaFold: ITGB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ITGB1 is not avaliable on ENCORE database.

36 proteins are bound to ITGB1 RNA:

eCLIP assay for ITGB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ITGB1 is not available on ENCORE database.

140 RBPs can affect the gene expression of ITGB1 :

The Knockdown/knockout RNA-Seq assay for ITGB1 is not available on ENCORE database.

7 RBPs can affect the splicing of ITGB1 :

The Knockdown/knockout RNA-Seq assay for ITGB1 is not avaliable on ENCORE database.