SAA4

General Information

Gene Name       : SAA4
Gene ID             : ENSG00000148965.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SAA4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SAA4ENSG00000148965.90.000.020.01ENCSR000AEF
HepG2SAA4ENSG00000148965.98.7916.2012.49ENCSR985KAT
K562SAA4ENSG00000148965.90.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SAA4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SAA4 RNA is bound by 1 proteins.  







eCLIP assay for SAA4 is not avaliable on ENCORE database.





1 proteins are bound to SAA4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr111825312518253144-CDS,intron-Distal3.330227.20781HepG2SND1
chr111825394218253989-CDS,intron-Distal5.0270611.90389HepG2SND1
chr111825306418253125-CDS,intron-Distal5.0108522.81761HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SAA4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SAA4 is not available on ENCORE database.

  • 148 RBPs can affect the levels of SAA4.  








The Knockdown/knockout RNA-Seq assay for SAA4 is not available on ENCORE database.





148 RBPs can affect the gene expression of SAA4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SAA4ENSG00000148965.4100.87330417.17550-2.0481013.0963011.03790HepG2AATF
SAA4ENSG00000148965.41467.233601155.874200.344002.527001.62540HepG2ABCF1
SAA4ENSG00000148965.4280.98190949.36920-1.7565059.4720057.56840HepG2ACO1
SAA4ENSG00000148965.4149.72380373.39190-1.3184013.0698011.13630HepG2ADAR
SAA4ENSG00000148965.4154.809701310.97270-3.0821077.5038075.33750HepG2AKAP1
SAA4ENSG00000148965.4217.99230492.89610-1.177008.593306.86690HepG2AKAP8
SAA4ENSG00000148965.4281.652101084.73730-1.9454040.3674037.96220HepG2ASCC1
SAA4ENSG00000148965.42087.816601043.237701.0008020.7549017.55670HepG2ATP5C1
SAA4ENSG00000148965.41446.06530563.720301.3590023.7244021.53420HepG2BCLAF1
SAA4ENSG00000148965.41507.25640770.968200.967108.906407.90810HepG2BOP1
SAA4ENSG00000148965.41983.35890474.145502.0644028.8864026.93600HepG2CALR
SAA4ENSG00000148965.4126.79010452.39890-1.8352019.6338017.23400HepG2CCAR1
SAA4ENSG00000148965.41612.041501030.569500.645307.245206.03840HepG2CIRBP
SAA4ENSG00000148965.4614.09800949.15480-0.6282011.113009.96120HepG2CKAP4
SAA4ENSG00000148965.41132.63580707.757200.678304.656003.78480HepG2CPSF6
SAA4ENSG00000148965.4560.79110382.909700.550405.156903.76460HepG2YBX3
SAA4ENSG00000148965.470.66180400.77010-2.5038035.6147032.80220HepG2CSTF2
SAA4ENSG00000148965.4690.37140426.893500.693404.534902.64540HepG2CSTF2T
SAA4ENSG00000148965.4199.50290682.48220-1.7744040.5815038.70260HepG2CELF1
SAA4ENSG00000148965.41979.71730733.917201.4315074.4362071.74090HepG2DAZAP1
SAA4ENSG00000148965.41222.01050878.026800.476808.241606.93530HepG2DDX19B
SAA4ENSG00000148965.4523.33270383.441800.448603.389902.10530HepG2DDX1
SAA4ENSG00000148965.4896.52900460.848000.960004.647903.79320HepG2DDX21
SAA4ENSG00000148965.42457.41550596.818302.0417046.5823042.21240HepG2DDX27
SAA4ENSG00000148965.41208.38050483.250001.3221022.3980019.44000HepG2DDX28
SAA4ENSG00000148965.41946.996001255.850200.632506.743905.80850HepG2DDX3X
SAA4ENSG00000148965.4456.8623084.259402.4387017.9351015.21080HepG2DDX47
SAA4ENSG00000148965.4124.09700365.56490-1.5587018.7124015.75230HepG2DDX52
SAA4ENSG00000148965.4996.24480637.780500.643305.509204.46300HepG2DDX55
SAA4ENSG00000148965.4288.12670803.72140-1.4800010.290008.48450HepG2DDX59
SAA4ENSG00000148965.43151.74400794.271401.9883011.838009.92200HepG2DDX5
SAA4ENSG00000148965.4329.185401078.71310-1.7123028.0272026.37240HepG2DDX6
SAA4ENSG00000148965.41313.73530908.287000.532408.512307.45430HepG2DKC1
SAA4ENSG00000148965.4771.12110372.670101.0490023.8385022.09860HepG2DNAJC2
SAA4ENSG00000148965.4931.84930363.674501.3573022.0912019.16110HepG2EFTUD2
SAA4ENSG00000148965.41318.196301037.080600.345902.224201.68640HepG2EIF2S1
SAA4ENSG00000148965.41199.74280876.919200.452104.618703.12750HepG2EIF2S2
SAA4ENSG00000148965.4205.93300354.11970-0.782104.537903.40050HepG2EIF3D
SAA4ENSG00000148965.4210.81380434.87750-1.044605.154903.73530HepG2EIF3G
SAA4ENSG00000148965.44053.881901146.138301.8224045.8592043.35740HepG2EIF4A3
SAA4ENSG00000148965.41134.20450693.543200.709502.687701.88460HepG2EIF4G2
SAA4ENSG00000148965.4523.083601001.35650-0.9368012.3660010.34360HepG2ESF1
SAA4ENSG00000148965.4229.12810412.04120-0.846604.157302.05500HepG2EXOSC9
SAA4ENSG00000148965.4140.54450316.45260-1.1710011.312308.99220HepG2FAM120A
SAA4ENSG00000148965.4764.76460438.920600.801004.808503.36310HepG2FASTKD2
SAA4ENSG00000148965.4277.233101167.18010-2.0739040.0422037.80760HepG2FIP1L1
SAA4ENSG00000148965.41146.25390530.889201.1103015.1169012.63160HepG2FKBP4
SAA4ENSG00000148965.41552.61260686.559701.1771017.8409014.16110HepG2FMR1
SAA4ENSG00000148965.42146.80540709.040301.598206.860805.26820HepG2FTO
SAA4ENSG00000148965.4327.21710816.62410-1.3194022.6159020.47230HepG2FUBP3
SAA4ENSG00000148965.4116.66290609.53590-2.3854033.8134030.77880HepG2FUS
SAA4ENSG00000148965.4430.793601156.27740-1.4244024.6706022.84150HepG2FXR1
SAA4ENSG00000148965.4103.662701072.68420-3.3713088.0455084.66250HepG2G3BP1
SAA4ENSG00000148965.4590.301401138.70380-0.9479012.4096010.52730HepG2G3BP2
SAA4ENSG00000148965.4206.54800315.30420-0.610303.173702.20590HepG2GEMIN5
SAA4ENSG00000148965.4346.10140480.59040-0.473602.447201.49420HepG2GNB2L1
SAA4ENSG00000148965.41281.12970802.205800.675305.733004.83460HepG2GPKOW
SAA4ENSG00000148965.4642.83550446.083300.527003.408201.30340HepG2GRWD1
SAA4ENSG00000148965.4507.94930906.37090-0.8354012.5877010.74410HepG2HDGF
SAA4ENSG00000148965.4966.72860674.451700.519306.456705.13200HepG2HNRNPA2B1
SAA4ENSG00000148965.41647.52720422.222501.9641014.7204013.24630HepG2HNRNPC
SAA4ENSG00000148965.4266.129901086.03260-2.0289046.4905043.94610HepG2HNRNPK
SAA4ENSG00000148965.4365.19330668.56700-0.8724014.8430013.39320HepG2HNRNPL
SAA4ENSG00000148965.43858.20640765.568102.3332088.7551086.09950HepG2HNRNPLL
SAA4ENSG00000148965.4313.61520805.37220-1.3607024.3794022.10080HepG2HNRNPM
SAA4ENSG00000148965.4133.51650419.43100-1.6514027.0378025.30440HepG2HNRNPU
SAA4ENSG00000148965.42425.765901275.430300.9274018.4925016.80750HepG2IGF2BP1
SAA4ENSG00000148965.41379.537801090.384000.339202.351601.72310HepG2IGF2BP2
SAA4ENSG00000148965.4585.385201023.18180-0.805602.975701.95620HepG2IGF2BP3
SAA4ENSG00000148965.4589.42280428.434600.460103.282702.48990HepG2ILF2
SAA4ENSG00000148965.4655.072701096.69520-0.743406.014604.47830HepG2KHSRP
SAA4ENSG00000148965.41347.83950477.546601.4968019.0869016.89510HepG2LARP4
SAA4ENSG00000148965.4339.45490470.72500-0.471702.553001.46470HepG2LARP7
SAA4ENSG00000148965.4355.64160494.41420-0.475302.561801.39740HepG2LIN28B
SAA4ENSG00000148965.4975.78500472.370601.0465010.898407.89510HepG2LSM11
SAA4ENSG00000148965.43609.823101156.680501.6418042.7878040.48110HepG2MAGOH
SAA4ENSG00000148965.4524.541701163.17510-1.1489015.0855013.70180HepG2MATR3
SAA4ENSG00000148965.4205.09960370.63330-0.853703.626402.42950HepG2METAP2
SAA4ENSG00000148965.4487.83800944.74730-0.9535014.0594012.38810HepG2MSI2
SAA4ENSG00000148965.41239.58070780.981400.666404.359703.12830HepG2MTPAP
SAA4ENSG00000148965.41276.88530508.500601.3282016.5463013.45160HepG2NKRF
SAA4ENSG00000148965.4202.84850727.74640-1.8430042.8837040.28710HepG2NOL12
SAA4ENSG00000148965.424.6913069.57050-1.494503.103402.16050HepG2PABPC1
SAA4ENSG00000148965.4150.21350415.16290-1.4667021.3901019.47020HepG2PARN
SAA4ENSG00000148965.4159.75230292.84430-0.874306.374004.55520HepG2PKM
SAA4ENSG00000148965.4129.58590635.34070-2.2936059.3677056.81990HepG2PRPF4
SAA4ENSG00000148965.4303.32170606.61980-0.999907.476705.56290HepG2PRPF6
SAA4ENSG00000148965.4340.00500492.13970-0.533502.747201.94170HepG2PRPF8
SAA4ENSG00000148965.4983.349201152.40760-0.228901.853801.38850HepG2PTBP1
SAA4ENSG00000148965.41694.56070694.675101.286404.006303.30360HepG2PUF60
SAA4ENSG00000148965.4584.07200737.40190-0.336303.558902.90380HepG2PUM1
SAA4ENSG00000148965.4306.24730736.87960-1.2667022.1826020.39670HepG2PUM2
SAA4ENSG00000148965.41202.07940966.992900.313903.762403.06690HepG2PUS1
SAA4ENSG00000148965.4245.450801248.12520-2.3463084.7874082.20060HepG2QKI
SAA4ENSG00000148965.4409.011301035.98460-1.3408031.1963028.88870HepG2RBM15
SAA4ENSG00000148965.4306.72070802.56500-1.3877014.4847013.48820HepG2RBM22
SAA4ENSG00000148965.4219.516001132.73900-2.3674072.5348069.56620HepG2RBM25
SAA4ENSG00000148965.4271.27640567.59840-1.0651010.350908.41390HepG2RBM27
SAA4ENSG00000148965.421.0944073.51620-1.801204.364902.45550HepG2RBM47
SAA4ENSG00000148965.4409.973601282.53440-1.6454055.9857054.29030HepG2NELFE
SAA4ENSG00000148965.4291.195501194.47870-2.0363076.9948074.72860HepG2RECQL
SAA4ENSG00000148965.44786.371501395.106901.7785068.0078065.76020HepG2RPLP0
SAA4ENSG00000148965.41332.34710546.953101.2844014.3841012.42570HepG2RPS10
SAA4ENSG00000148965.4773.35500344.554501.1663010.670809.55880HepG2RPS19
SAA4ENSG00000148965.41367.06250523.510401.3847027.7160025.43630HepG2RPS2
SAA4ENSG00000148965.4838.8839076.372303.4572066.9930063.31270HepG2RPS3A
SAA4ENSG00000148965.4925.84660373.520901.3095036.2763034.34660HepG2SAFB2
SAA4ENSG00000148965.42086.10500345.845002.5925089.8153085.93830HepG2SERBP1
SAA4ENSG00000148965.4992.034601359.21480-0.454302.389701.76430HepG2SF3A3
SAA4ENSG00000148965.41865.96370757.708001.3001018.0917016.45540HepG2SF3B1
SAA4ENSG00000148965.41019.903701199.83810-0.234402.087801.56300HepG2SF3B4
SAA4ENSG00000148965.4926.89380543.262100.770703.288901.53960HepG2SLTM
SAA4ENSG00000148965.4947.61690435.587001.1212019.0184017.56380HepG2SMN1
SAA4ENSG00000148965.4871.92060567.555700.619304.158602.96650HepG2SMNDC1
SAA4ENSG00000148965.4324.35500541.69950-0.739904.961302.77850HepG2SND1
SAA4ENSG00000148965.4184.96900843.10210-2.1884017.4785015.56020HepG2SNRNP70
SAA4ENSG00000148965.4335.39520906.50140-1.4344014.7497013.83630HepG2SRFBP1
SAA4ENSG00000148965.4348.67530607.50180-0.801005.853903.63930HepG2SRP68
SAA4ENSG00000148965.41517.786401252.357800.277203.083602.59150HepG2SRSF1
SAA4ENSG00000148965.4365.10150815.44770-1.159308.182506.38360HepG2SRSF3
SAA4ENSG00000148965.41159.22760685.858800.7571014.7215013.43960HepG2SRSF5
SAA4ENSG00000148965.42306.017601272.471600.8577022.4347020.81080HepG2SRSF7
SAA4ENSG00000148965.4188.373501018.84810-2.4353096.5596094.29020HepG2SRSF9
SAA4ENSG00000148965.4246.96470534.73380-1.1145011.171208.84590HepG2SSRP1
SAA4ENSG00000148965.4496.56740779.69770-0.650903.811802.37970HepG2STAU1
SAA4ENSG00000148965.421.8706066.40340-1.602304.721103.24490HepG2STIP1
SAA4ENSG00000148965.4480.57280780.03750-0.6988010.996709.89540HepG2SUCLG1
SAA4ENSG00000148965.41863.89300788.228601.2415012.8425010.93940HepG2SUPT6H
SAA4ENSG00000148965.41075.92640634.942300.760807.638706.60660HepG2SUPV3L1
SAA4ENSG00000148965.4215.820601125.63060-2.3828086.7587084.19530HepG2TAF15
SAA4ENSG00000148965.41768.54470746.436201.2444011.9712010.62580HepG2TARDBP
SAA4ENSG00000148965.4981.84800425.604901.2059011.391309.64780HepG2TFIP11
SAA4ENSG00000148965.4247.128201034.34080-2.0654059.3959055.93440HepG2TIA1
SAA4ENSG00000148965.43777.49240407.549703.21230107.28710105.05850HepG2TIAL1
SAA4ENSG00000148965.4244.63040559.10330-1.192509.722307.17500HepG2TRA2A
SAA4ENSG00000148965.4441.93020678.62500-0.618805.960904.61310HepG2TUFM
SAA4ENSG00000148965.491.84920375.10840-2.0300024.7202022.57820HepG2UCHL5
SAA4ENSG00000148965.41865.77790581.522401.6818027.0196024.09980HepG2UPF2
SAA4ENSG00000148965.4573.908801239.03100-1.1103021.9319019.43860HepG2UTP18
SAA4ENSG00000148965.4710.004101163.78430-0.7129013.8750012.68910HepG2UTP3
SAA4ENSG00000148965.4362.55090547.54040-0.594802.972801.66170HepG2XRCC5
SAA4ENSG00000148965.4414.44920612.39340-0.563303.097601.97320HepG2XRCC6
SAA4ENSG00000148965.4324.12780625.02980-0.947408.297207.05790HepG2XRN2
SAA4ENSG00000148965.41884.63240626.985201.5877060.7484058.49720HepG2ZC3H8
SAA4ENSG00000148965.42188.702701325.728100.7232025.5645024.32490HepG2ZNF622
SAA4ENSG00000148965.4323.01690556.30030-0.784305.514403.60740HepG2ZRANB2
SAA4ENSG00000148965.40.000007.63750-99999.999992.159901.44030K562MTPAP
SAA4ENSG00000148965.40.000008.37400-99999.999992.560301.77400K562SF3A3
SAA4ENSG00000148965.40.000007.69820-99999.999992.295201.49730K562WDR3
SAA4ENSG00000148965.40.000008.00610-99999.999992.499401.69320K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SAA4 is not available on ENCORE database.





2 RBPs can affect the splicing of SAA4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESAA4ENSG00000148965.4chr11-182573821825747718253941182540801825826318258440-0.069000.000000.00002excludedHepG2U2AF2
SESAA4ENSG00000148965.4chr11-182573821825752718253941182540801825826318258440-0.060000.000020.00116excludedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SAA4 is not avaliable on ENCORE database.