RTN4

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RTN4	ENSG00000115310.17	104.79	88.35	96.57	ENCSR000AEF
HepG2	RTN4	ENSG00000115310.17	117.58	142.22	129.90	ENCSR985KAT
K562	RTN4	ENSG00000115310.17	156.94	166.58	161.76	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RTN4 is not avaliable on ENCORE database.

Proteins bound to RNA

RTN4 RNA is bound by 62 proteins.

eCLIP assay for RTN4 is not avaliable on ENCORE database.

62 proteins are bound to RTN4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	55199559	55199621	-	3'-UTR,intron-Distal	3.03320	4.01390	K562	IGF2BP2
chr2	55200187	55200217	-	3'-UTR,intron-Distal	3.04473	30.19882	K562	DDX55
chr2	55199364	55199428	-	3'-UTR,intron-Distal	5.81809	63.86665	K562	ZC3H11A
chr2	55199578	55199621	-	3'-UTR,intron-Distal	3.73389	3.08588	HepG2	IGF2BP3
chr2	55200174	55200200	-	3'-UTR,intron-Distal	4.71015	400.00000	K562	PABPC4
chr2	55200101	55200156	-	3'-UTR,intron-Distal	4.46642	9.41336	K562	IGF2BP1
chr2	55199796	55199844	-	3'-UTR,intron-Distal,intron-Proximal	3.11998	28.91339	K562	UPF1
chr2	55199622	55199657	-	3'-UTR,intron-Distal,intron-Proximal	5.58922	16.40899	K562	IGF2BP1
chr2	55199608	55199658	-	3'-UTR,intron-Distal,intron-Proximal	3.21930	5.43111	HepG2	UPF1
chr2	55199876	55199917	-	3'-UTR,intron-Distal,intron-Proximal	3.71903	9.93908	HepG2	DDX55
chr2	55200110	55200166	-	3'-UTR,intron-Distal	3.39008	6.60798	HepG2	UPF1
chr2	55200051	55200101	-	3'-UTR,intron-Distal	5.40619	10.51368	K562	IGF2BP1
chr2	55199365	55199431	-	3'-UTR,intron-Distal	6.39990	26.25400	K562	IGF2BP1
chr2	55200097	55200168	-	3'-UTR,intron-Distal	3.11513	25.35484	K562	DDX6
chr2	55199498	55199530	-	3'-UTR,intron-Distal	3.19349	4.02879	K562	IGF2BP2
chr2	55199898	55199929	-	3'-UTR,intron-Distal,intron-Proximal	4.90353	71.73798	K562	ZC3H11A
chr2	55199473	55199505	-	3'-UTR,intron-Distal	4.65602	36.40531	K562	ZC3H11A
chr2	55199822	55199873	-	3'-UTR,intron-Distal,intron-Proximal	3.22096	26.57453	HepG2	ZC3H11A
chr2	55200168	55200249	-	3'-UTR,intron-Distal	3.84843	17.87657	K562	APOBEC3C
chr2	55200176	55200211	-	3'-UTR,intron-Distal	3.00929	6.27333	HepG2	DDX55
chr2	55255311	55255331	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.64492	5.21358	K562	TIA1
chr2	55199462	55199503	-	3'-UTR,intron-Distal	6.18402	42.40029	K562	IGF2BP1
chr2	55199361	55199410	-	3'-UTR,intron-Distal	3.22335	21.85780	K562	PABPC4
chr2	55199799	55199909	-	3'-UTR,intron-Distal,intron-Proximal	4.99669	57.35261	HepG2	SUB1
chr2	55199577	55199598	-	3'-UTR,intron-Distal	5.22270	8.97722	K562	IGF2BP1
chr2	55200603	55200663	-	3'-UTR,intron-Distal,intron-Proximal	4.02356	15.55931	K562	AQR
chr2	55199659	55199715	-	3'-UTR,intron-Distal,intron-Proximal	3.26628	10.90784	HepG2	IGF2BP1
chr2	55200110	55200163	-	3'-UTR,intron-Distal	4.20985	4.66293	HepG2	TIA1
chr2	55199359	55199424	-	3'-UTR,intron-Distal	3.85859	13.78204	HepG2	SUB1
chr2	55199503	55199512	-	3'-UTR,intron-Distal	4.66592	12.82444	K562	IGF2BP1
chr2	55199505	55199528	-	3'-UTR,intron-Distal	4.19589	35.20801	K562	ZC3H11A
chr2	55199512	55199524	-	3'-UTR,intron-Distal	3.88326	7.79640	K562	IGF2BP1
chr2	55200023	55200047	-	3'-UTR,intron-Distal	3.15307	7.15217	HepG2	ZC3H11A
chr2	55200114	55200159	-	3'-UTR,intron-Distal	3.85629	28.52429	K562	ZC3H11A
chr2	55200110	55200168	-	3'-UTR,intron-Distal	3.58946	8.16472	K562	APOBEC3C
chr2	55199530	55199557	-	3'-UTR,intron-Distal	3.58708	4.39009	K562	IGF2BP2
chr2	55199528	55199589	-	3'-UTR,intron-Distal	3.01319	30.09731	K562	ZC3H11A
chr2	55199748	55199796	-	3'-UTR,intron-Distal	3.02025	18.91311	K562	UPF1
chr2	55199844	55199870	-	3'-UTR,intron-Distal,intron-Proximal	3.12638	21.76850	K562	UPF1
chr2	55199540	55199612	-	3'-UTR,intron-Distal	3.18132	6.67577	HepG2	IGF2BP1
chr2	55254596	55254684	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.80125	39.03009	HepG2	QKI
chr2	55200011	55200040	-	3'-UTR,intron-Distal	5.48057	13.83696	K562	IGF2BP1
chr2	55199892	55199927	-	3'-UTR,intron-Distal,intron-Proximal	3.55342	8.84143	K562	IGF2BP1
chr2	55200200	55200244	-	3'-UTR,intron-Distal	4.09811	400.00000	K562	PABPC4
chr2	55199870	55199922	-	3'-UTR,intron-Distal,intron-Proximal	3.04010	20.24463	K562	UPF1
chr2	55199929	55199991	-	3'-UTR,intron-Distal,intron-Proximal	3.86874	42.02751	K562	ZC3H11A
chr2	55199475	55199508	-	3'-UTR,intron-Distal	3.14883	13.97980	HepG2	ZC3H11A
chr2	55200216	55200244	-	3'-UTR,intron-Distal	3.10468	67.71458	K562	DDX6
chr2	55199660	55199714	-	3'-UTR,intron-Distal,intron-Proximal	4.40105	12.37713	K562	IGF2BP2
chr2	55199359	55199417	-	3'-UTR,intron-Distal	3.43649	16.59101	HepG2	ZC3H11A
chr2	55199366	55199428	-	3'-UTR,intron-Distal	3.22804	16.00202	K562	UPF1
chr2	55200040	55200048	-	3'-UTR,intron-Distal	5.47335	14.59300	K562	IGF2BP1
chr2	55199598	55199618	-	3'-UTR,intron-Distal	4.95774	7.48557	K562	IGF2BP1
chr2	55199826	55199869	-	3'-UTR,intron-Distal,intron-Proximal	4.05388	45.60074	K562	ZC3H11A
chr2	55200244	55200261	-	3'-UTR,intron-Distal	3.28830	3.96838	HepG2	TIAL1
chr2	55199869	55199898	-	3'-UTR,intron-Distal,intron-Proximal	4.62610	70.35911	K562	ZC3H11A
chr2	55199657	55199714	-	3'-UTR,intron-Distal,intron-Proximal	3.90740	17.00431	K562	IGF2BP1
chr2	55254614	55254682	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.92075	400.00000	K562	QKI
chr2	55199816	55199873	-	3'-UTR,intron-Distal,intron-Proximal	3.72014	15.99512	HepG2	FUBP3
chr2	55199873	55199924	-	3'-UTR,intron-Distal,intron-Proximal	3.17480	21.98435	HepG2	ZC3H11A
chr2	55199817	55199907	-	3'-UTR,intron-Distal,intron-Proximal	4.05397	11.85744	HepG2	UPF1
chr2	55200175	55200216	-	3'-UTR,intron-Distal	3.35516	70.68954	K562	DDX6
chr2	55199524	55199577	-	3'-UTR,intron-Distal	4.72996	12.67379	K562	IGF2BP1
chr2	55199882	55199931	-	3'-UTR,intron-Distal,intron-Proximal	3.88619	62.68696	K562	PABPC4
chr2	55200180	55200215	-	3'-UTR,intron-Distal	3.25199	46.01670	K562	ZC3H11A
chr2	55199434	55199462	-	3'-UTR,intron-Distal	6.66301	30.18942	K562	IGF2BP1
chr2	55200096	55200165	-	3'-UTR,intron-Distal	3.72220	53.84918	K562	PABPC4
chr2	55199550	55199608	-	3'-UTR,intron-Distal	3.06533	5.79385	HepG2	UPF1
chr2	55199927	55199983	-	3'-UTR,intron-Distal,intron-Proximal	3.60444	7.90574	K562	IGF2BP1
chr2	55200071	55200162	-	3'-UTR,intron-Distal	4.30664	17.94157	HepG2	FUBP3
chr2	55199361	55199409	-	3'-UTR,intron-Distal	3.40318	5.95698	K562	APOBEC3C
chr2	55277529	55277641	-	5'-UTR,intron-Distal,intron-Proximal	3.24662	32.65918	K562	DDX3X
chr2	55276284	55276358	-	5'-UTR,intron-Distal,intron-Proximal	3.65584	11.12438	K562	NONO
chr2	55237269	55237324	-	5'-UTR,intron-Distal	4.04228	3.56077	K562	TAF15
chr2	55276288	55276422	-	5'-UTR,intron-Distal,intron-Proximal	3.26012	7.66500	K562	FUS
chr2	55277581	55277631	-	5'-UTR,intron-Distal,intron-Proximal	3.40762	13.78383	HepG2	DDX3X
chr2	55277459	55277570	-	5'-UTR,intron-Distal,intron-Proximal	3.00430	19.78447	K562	GEMIN5
chr2	55277454	55277516	-	5'-UTR,intron-Distal,intron-Proximal	3.30749	16.19280	HepG2	RPS3
chr2	55200999	55201003	-	CDS,intron-Distal	3.78668	10.94608	K562	SND1
chr2	55201786	55201864	-	CDS,intron-Distal,intron-Proximal	5.65668	12.15723	HepG2	PRPF8
chr2	55252774	55252829	-	CDS,intron-Distal	3.55842	5.57875	K562	SAFB
chr2	55276687	55276809	-	CDS,intron-Distal,intron-Proximal	5.87814	6.82550	K562	XRN2
chr2	55200895	55201009	-	CDS,intron-Distal,intron-Proximal	3.97274	4.75655	HepG2	PRPF8
chr2	55200746	55200758	-	CDS,intron-Distal,intron-Proximal	3.97101	24.37004	K562	SND1
chr2	55200732	55200779	-	CDS,intron-Distal,intron-Proximal	4.10105	51.90675	K562	SF3B4
chr2	55200956	55200960	-	CDS,intron-Distal,intron-Proximal	4.06340	24.71713	K562	SND1
chr2	55209708	55209787	-	CDS,intron-Distal	3.34278	4.15999	K562	SRSF1
chr2	55253844	55253918	-	CDS,intron-Distal	3.61565	8.78503	K562	SAFB
chr2	55253988	55254052	-	CDS,intron-Distal	3.54684	5.38982	K562	PPIL4
chr2	55276919	55276978	-	CDS,intron-Distal	5.10804	13.47599	K562	SERBP1
chr2	55214685	55214740	-	CDS,intron-Distal	3.42652	10.79003	K562	RBM15
chr2	55200955	55200983	-	CDS,intron-Distal,intron-Proximal	4.42773	6.16691	HepG2	SND1
chr2	55277301	55277367	-	CDS,intron-Distal,intron-Proximal	3.73546	13.64896	K562	UCHL5
chr2	55276967	55277119	-	CDS,intron-Distal	3.53529	69.81327	K562	PCBP1
chr2	55253023	55253067	-	CDS,intron-Distal	4.29386	8.03807	K562	RBM15
chr2	55276957	55277109	-	CDS,intron-Distal	3.04376	34.39445	HepG2	RPS3
chr2	55253382	55253464	-	CDS,intron-Distal	3.09704	9.54552	K562	UCHL5
chr2	55200325	55200334	-	CDS,intron-Distal	4.22902	13.70287	K562	SND1
chr2	55209678	55209787	-	CDS,intron-Distal	3.56840	7.04877	HepG2	LIN28B
chr2	55253401	55253499	-	CDS,intron-Distal	3.07183	3.75693	HepG2	HLTF
chr2	55253918	55253956	-	CDS,intron-Distal	3.02897	3.55908	K562	SAFB
chr2	55253084	55253126	-	CDS,intron-Distal	3.35791	7.63771	K562	RBM15
chr2	55200949	55201026	-	CDS,intron-Distal,intron-Proximal	4.23595	4.27476	HepG2	AQR
chr2	55200729	55200757	-	CDS,intron-Distal	4.15970	4.96773	HepG2	SND1
chr2	55253067	55253126	-	CDS,intron-Distal	4.54164	3.19638	K562	SAFB2
chr2	55253644	55253684	-	CDS,intron-Distal	3.13473	3.90932	K562	PPIL4
chr2	55252447	55252496	-	CDS,intron-Distal	3.26017	7.46708	K562	RBM15
chr2	55201878	55201901	-	CDS,intron-Distal,intron-Proximal	3.46599	14.43222	K562	SND1
chr2	55277120	55277177	-	CDS,intron-Distal	3.70217	6.65380	HepG2	PCBP1
chr2	55253560	55253626	-	CDS,intron-Distal	3.54796	5.98322	K562	SAFB
chr2	55252349	55252383	-	CDS,intron-Distal	4.44167	14.68354	K562	RBM15
chr2	55200698	55200703	-	CDS,intron-Distal,intron-Proximal	3.99227	17.46352	K562	SND1
chr2	55277093	55277173	-	CDS,intron-Distal	4.65511	17.32123	K562	SERBP1
chr2	55200703	55200718	-	CDS,intron-Distal	3.94961	20.73035	K562	SND1
chr2	55252444	55252537	-	CDS,intron-Distal	4.19225	8.87172	K562	SAFB
chr2	55277218	55277301	-	CDS,intron-Distal	3.37591	14.69825	K562	UCHL5
chr2	55214676	55214760	-	CDS,intron-Distal	3.07935	11.32097	K562	SND1
chr2	55253366	55253413	-	CDS,intron-Distal	3.85506	13.02710	K562	RBM15
chr2	55209679	55209729	-	CDS,intron-Distal	6.33588	29.36222	K562	SND1
chr2	55276889	55276957	-	CDS,intron-Distal	3.92184	19.95570	HepG2	RPS3
chr2	55277214	55277255	-	CDS,intron-Distal	4.94697	8.16288	K562	SERBP1
chr2	55277141	55277199	-	CDS,intron-Distal	3.08983	6.45556	K562	GEMIN5
chr2	55253339	55253383	-	CDS,intron-Distal	3.78467	5.57875	K562	SAFB
chr2	55214630	55214686	-	CDS,intron-Distal	3.25404	3.85127	HepG2	GRWD1
chr2	55276934	55277048	-	CDS,intron-Distal	3.01635	28.38380	K562	GEMIN5
chr2	55214636	55214798	-	CDS,intron-Distal,intron-Proximal	3.88902	4.79691	K562	FXR1
chr2	55253928	55253960	-	CDS,intron-Distal	3.97022	3.90264	K562	PPIL4
chr2	55277126	55277183	-	CDS,intron-Distal	3.50582	3.88378	K562	IGF2BP2
chr2	55253383	55253518	-	CDS,intron-Distal	4.71236	14.78225	K562	SAFB
chr2	55201839	55201878	-	CDS,intron-Distal	3.50867	17.68472	K562	SND1
chr2	55277305	55277371	-	CDS,intron-Distal,intron-Proximal	3.04678	18.82226	K562	ZNF622
chr2	55253709	55253787	-	CDS,intron-Distal	4.72390	5.64533	K562	TRA2A
chr2	55276978	55277093	-	CDS,intron-Distal	4.74204	25.73911	K562	SERBP1
chr2	55214795	55214834	-	CDS,intron-Distal,intron-Proximal	3.45415	5.99947	HepG2	G3BP1
chr2	55200960	55200976	-	CDS,intron-Distal	4.19433	31.35366	K562	SND1
chr2	55253329	55253366	-	CDS,intron-Distal	3.54317	9.64595	K562	RBM15
chr2	55201830	55201839	-	CDS,intron-Distal,intron-Proximal	3.99870	9.53404	K562	SND1
chr2	55200976	55200999	-	CDS,intron-Distal	3.94749	21.34461	K562	SND1
chr2	55253069	55253147	-	CDS,intron-Distal	3.72247	7.56994	K562	SAFB
chr2	55276981	55277072	-	CDS,intron-Distal	3.51368	19.69208	HepG2	PCBP1
chr2	55200718	55200746	-	CDS,intron-Distal	4.23588	30.45499	K562	SND1
chr2	55277225	55277366	-	CDS,intron-Distal,intron-Proximal	3.86375	53.72550	HepG2	RPS3
chr2	55277373	55277426	-	CDS,intron-Distal,intron-Proximal	3.05100	16.24416	HepG2	RPS3
chr2	55214636	55214676	-	CDS,intron-Distal	3.68701	10.70706	K562	SND1
chr2	55252330	55252349	-	CDS,intron-Distal	3.90345	6.56546	K562	RBM15
chr2	55253975	55254095	-	CDS,intron-Distal	5.22600	13.22362	K562	SAFB2
chr2	55276959	55277069	-	CDS,intron-Distal	3.71469	21.21655	HepG2	PCBP2
chr2	55252323	55252366	-	CDS,intron-Distal	3.34869	3.26524	K562	SAFB2
chr2	55200976	55201000	-	CDS,intron-Distal	3.53080	3.02821	K562	IGF2BP1
chr2	55209649	55209679	-	CDS,intron-Distal,intron-Proximal	3.20423	10.53865	K562	SND1
chr2	55209729	55209789	-	CDS,intron-Distal	5.08837	28.80068	K562	SND1
chr2	55200307	55200325	-	CDS,intron-Distal	3.59437	10.22977	K562	SND1
chr2	55200959	55200976	-	CDS,intron-Distal	3.48055	3.38408	K562	IGF2BP1
chr2	55277243	55277322	-	CDS,intron-Distal	3.15961	32.26038	K562	RPS3
chr2	55277207	55277305	-	CDS,intron-Distal	3.29323	19.15634	K562	ZNF622
chr2	55252354	55252410	-	CDS,intron-Distal	3.78873	5.98322	K562	SAFB
chr2	55214633	55214795	-	CDS,intron-Distal,intron-Proximal	3.00113	9.49143	HepG2	G3BP1
chr2	55277109	55277180	-	CDS,intron-Distal	3.01112	9.94661	HepG2	RPS3
chr2	55253946	55254093	-	CDS,intron-Distal	3.23665	6.73181	K562	HLTF
chr2	55214626	55214636	-	CDS,intron-Distal,intron-Proximal	4.25126	12.26215	K562	SND1
chr2	55263292	55263339	-	intron-Distal	3.01706	3.30467	K562	KHSRP
chr2	55262401	55262420	-	intron-Distal	3.16763	4.74410	K562	EXOSC5
chr2	55234858	55234897	-	intron-Distal	3.36689	3.10855	K562	FTO
chr2	55236545	55236614	-	intron-Distal	3.48935	7.15738	HepG2	U2AF2
chr2	55209566	55209627	-	intron-Distal,intron-Proximal	4.54779	7.35008	K562	PRPF8
chr2	55249933	55250090	-	intron-Distal	4.30781	6.49446	K562	IGF2BP1
chr2	55249892	55249951	-	intron-Distal	3.63056	5.51560	K562	HNRNPA1
chr2	55276489	55276544	-	intron-Distal	4.03844	12.01271	K562	NONO
chr2	55221623	55221680	-	intron-Distal	3.43724	7.03713	K562	KHSRP
chr2	55262825	55262877	-	intron-Distal	3.26802	8.22757	K562	TIA1
chr2	55214616	55214627	-	intron-Distal,intron-Proximal	4.90432	11.65116	K562	AQR
chr2	55262317	55262344	-	intron-Distal	3.74077	6.40701	K562	EXOSC5
chr2	55221505	55221537	-	intron-Distal	3.88019	7.26586	K562	KHSRP
chr2	55262270	55262369	-	intron-Distal	3.05936	5.05972	K562	RBFOX2
chr2	55276507	55276522	-	intron-Distal	3.91291	3.75624	K562	AKAP8L
chr2	55252160	55252182	-	intron-Distal,intron-Proximal	3.76062	6.10049	K562	TIA1
chr2	55264993	55265093	-	intron-Distal	3.00729	9.73986	K562	KHSRP
chr2	55264157	55264239	-	intron-Distal	4.13321	3.78432	HepG2	MATR3
chr2	55254716	55254731	-	intron-Distal,intron-Proximal	5.86219	10.09004	HepG2	QKI
chr2	55249980	55250077	-	intron-Distal	4.23877	9.61624	K562	TARDBP
chr2	55228499	55228578	-	intron-Distal	4.76723	6.58335	HepG2	QKI
chr2	55245418	55245484	-	intron-Distal	3.21491	5.18801	K562	U2AF1
chr2	55250002	55250046	-	intron-Distal	3.01254	3.37323	K562	TBRG4
chr2	55263017	55263088	-	intron-Distal	4.43586	4.66899	HepG2	HNRNPM
chr2	55245861	55245902	-	intron-Distal	3.42261	8.97943	K562	HNRNPL
chr2	55237820	55237872	-	intron-Distal	3.17544	3.57054	K562	U2AF2
chr2	55276151	55276209	-	intron-Distal	3.52268	7.09842	K562	NONO
chr2	55209573	55209651	-	intron-Distal,intron-Proximal	4.70810	13.90015	K562	AQR
chr2	55249947	55250005	-	intron-Distal	3.26593	3.97386	K562	SAFB
chr2	55200577	55200642	-	intron-Distal,intron-Proximal	4.89041	6.48028	K562	PRPF8
chr2	55247234	55247249	-	intron-Distal	3.19895	5.36119	K562	KHSRP
chr2	55216834	55216900	-	intron-Distal	4.17007	5.11295	K562	U2AF2
chr2	55262832	55262882	-	intron-Distal	3.31387	6.59879	K562	PTBP1
chr2	55261916	55261934	-	intron-Distal	3.80182	8.87792	K562	KHSRP
chr2	55236552	55236606	-	intron-Distal	3.98406	3.55640	HepG2	QKI
chr2	55255468	55255485	-	intron-Distal	4.67366	6.48592	K562	TIA1
chr2	55221267	55221334	-	intron-Distal	6.59600	18.78313	K562	QKI
chr2	55232786	55232856	-	intron-Distal	3.58136	3.76460	HepG2	HNRNPL
chr2	55221446	55221505	-	intron-Distal	3.35572	8.53706	K562	KHSRP
chr2	55276488	55276533	-	intron-Distal	3.16847	3.39478	K562	TAF15
chr2	55208050	55208132	-	intron-Distal	3.13624	5.26287	K562	KHDRBS1
chr2	55263299	55263340	-	intron-Distal	3.64445	11.47547	K562	EXOSC5
chr2	55224110	55224148	-	intron-Distal	3.38506	3.72904	K562	EXOSC5
chr2	55207180	55207272	-	intron-Distal	3.17288	4.81471	K562	HNRNPA1
chr2	55262702	55262751	-	intron-Distal	5.41674	7.41017	K562	PTBP1
chr2	55201824	55201831	-	intron-Distal,intron-Proximal	3.29034	13.16705	K562	AQR
chr2	55222755	55222880	-	intron-Distal	5.84580	14.82580	K562	TARDBP
chr2	55262216	55262249	-	intron-Distal	3.20583	7.40678	K562	EXOSC5
chr2	55201786	55201824	-	intron-Distal,intron-Proximal	3.72757	16.31110	K562	AQR
chr2	55251329	55251398	-	intron-Distal	3.19062	5.84418	K562	TBRG4
chr2	55221639	55221676	-	intron-Distal	4.27228	3.30687	K562	EXOSC5
chr2	55245084	55245131	-	intron-Distal	3.59641	4.23616	K562	TIA1
chr2	55259481	55259525	-	intron-Distal	3.76294	5.11767	HepG2	QKI
chr2	55245784	55245861	-	intron-Distal	3.99237	14.67929	K562	HNRNPL
chr2	55250575	55250622	-	intron-Distal	4.26802	6.12013	K562	TBRG4
chr2	55254682	55254700	-	intron-Distal,intron-Proximal	7.56835	91.62475	K562	QKI
chr2	55221272	55221332	-	intron-Distal	5.09525	6.58335	HepG2	QKI
chr2	55244693	55244754	-	intron-Distal	3.40538	12.58211	K562	KHSRP
chr2	55224295	55224362	-	intron-Distal	4.02783	11.36345	K562	KHSRP
chr2	55263035	55263098	-	intron-Distal	5.52617	19.40702	K562	EXOSC5
chr2	55217456	55217532	-	intron-Distal	3.09505	4.14287	K562	KHSRP
chr2	55276473	55276543	-	intron-Distal	3.54869	13.23588	K562	CSTF2T
chr2	55244742	55244814	-	intron-Distal	3.99753	3.48768	HepG2	KHSRP
chr2	55200779	55200804	-	intron-Distal,intron-Proximal	4.74430	39.99123	K562	SF3B4
chr2	55235216	55235305	-	intron-Distal	6.43717	24.07194	K562	TARDBP
chr2	55276619	55276681	-	intron-Distal	4.43659	14.38546	K562	NONO
chr2	55221586	55221623	-	intron-Distal	3.04463	4.83983	K562	KHSRP
chr2	55209569	55209623	-	intron-Distal,intron-Proximal	4.60389	9.85374	K562	TIA1
chr2	55217644	55217711	-	intron-Distal	4.16058	11.22001	K562	KHSRP
chr2	55201209	55201364	-	intron-Distal,intron-Proximal	3.05028	3.78707	HepG2	QKI
chr2	55276026	55276076	-	intron-Distal	3.31558	6.77180	K562	AKAP8L
chr2	55264290	55264338	-	intron-Distal	3.15753	6.82319	K562	KHSRP
chr2	55222909	55222950	-	intron-Distal	4.30482	4.48623	K562	EXOSC5
chr2	55245413	55245465	-	intron-Distal	3.61373	3.87810	K562	U2AF2
chr2	55276831	55276881	-	intron-Distal,intron-Proximal	3.24449	5.85631	K562	NONO
chr2	55232525	55232567	-	intron-Distal	4.34536	4.97297	K562	TIA1
chr2	55255176	55255220	-	intron-Distal,intron-Proximal	3.44681	6.22064	HepG2	QKI
chr2	55260321	55260375	-	intron-Distal	3.02880	4.11240	K562	TIA1
chr2	55262662	55262702	-	intron-Distal	3.78986	4.67922	K562	PTBP1
chr2	55262097	55262117	-	intron-Distal	3.06845	4.46778	K562	EXOSC5
chr2	55276650	55276683	-	intron-Distal	3.61096	24.02600	K562	TIA1
chr2	55236552	55236611	-	intron-Distal	3.01862	8.11252	K562	U2AF2
chr2	55221005	55221100	-	intron-Distal	5.27830	42.42604	K562	QKI
chr2	55209554	55209633	-	intron-Distal,intron-Proximal	3.64713	15.80410	K562	EFTUD2
chr2	55263794	55263840	-	intron-Distal	4.37790	7.31365	K562	EXOSC5
chr2	55220977	55221096	-	intron-Distal	4.60705	22.87115	HepG2	QKI
chr2	55250890	55250929	-	intron-Distal	3.80590	3.00997	K562	TAF15
chr2	55255365	55255419	-	intron-Distal,intron-Proximal	3.47864	5.09606	K562	PTBP1
chr2	55208180	55208236	-	intron-Distal	3.92119	7.25401	K562	TIA1
chr2	55263011	55263077	-	intron-Distal	3.77002	6.25586	HepG2	SUGP2
chr2	55221334	55221392	-	intron-Distal	4.47463	8.98522	K562	QKI
chr2	55203425	55203476	-	intron-Distal	3.33520	5.28226	K562	HNRNPU
chr2	55261884	55261916	-	intron-Distal	3.06255	7.04656	K562	KHSRP
chr2	55249971	55250024	-	intron-Distal	3.61821	3.43875	K562	EXOSC5
chr2	55221537	55221586	-	intron-Distal	4.73148	10.93437	K562	KHSRP
chr2	55222901	55222986	-	intron-Distal	5.13721	8.34301	K562	TARDBP
chr2	55276371	55276405	-	intron-Distal,intron-Proximal	3.25216	3.61506	K562	NONO
chr2	55247157	55247234	-	intron-Distal	3.22985	8.15436	K562	KHSRP
chr2	55221446	55221491	-	intron-Distal	4.14609	3.77503	K562	TIA1
chr2	55220831	55220923	-	intron-Distal	3.61637	3.16095	HepG2	U2AF2
chr2	55254652	55254705	-	intron-Distal,intron-Proximal	3.05533	7.06384	K562	KHSRP
chr2	55251172	55251267	-	intron-Distal	3.04221	5.69808	K562	EXOSC5
chr2	55254700	55254781	-	intron-Distal,intron-Proximal	6.56639	400.00000	K562	QKI
chr2	55232860	55232946	-	intron-Distal	3.46836	6.25504	K562	HNRNPL
chr2	55201003	55201054	-	intron-Distal,intron-Proximal	3.04283	12.07203	K562	SF3B4
chr2	55250035	55250055	-	intron-Distal	4.94073	10.90863	K562	EIF4G2
chr2	55263227	55263284	-	intron-Distal	4.88112	4.59504	K562	RBFOX2
chr2	55262702	55262737	-	intron-Distal	3.98542	3.21228	K562	TIA1
chr2	55250862	55250940	-	intron-Distal	5.11932	7.52645	K562	TARDBP
chr2	55262709	55262748	-	intron-Distal	4.15403	3.90241	K562	MATR3
chr2	55264010	55264057	-	intron-Distal	4.02981	9.69846	K562	EXOSC5
chr2	55200342	55200385	-	intron-Distal	3.88997	11.97728	K562	SF3B4
chr2	55250055	55250099	-	intron-Distal	4.25395	12.86319	K562	EIF4G2
chr2	55263393	55263445	-	intron-Distal	3.50952	13.48112	K562	EXOSC5
chr2	55262832	55262915	-	intron-Distal	3.66989	8.14904	K562	MATR3
chr2	55264245	55264279	-	intron-Distal	3.67331	7.26439	K562	EXOSC5
chr2	55217582	55217643	-	intron-Distal	3.54725	7.19702	K562	KHSRP
chr2	55201742	55201802	-	intron-Distal,intron-Proximal	3.46181	10.87012	K562	EFTUD2
chr2	55263241	55263273	-	intron-Distal	3.21529	6.83596	K562	EXOSC5
chr2	55262895	55262949	-	intron-Distal	3.11798	8.65886	K562	KHSRP
chr2	55251461	55251660	-	intron-Distal	3.52013	3.38316	HepG2	SFPQ
chr2	55232557	55232642	-	intron-Distal	3.96148	3.08314	K562	TARDBP
chr2	55245500	55245550	-	intron-Distal	3.14701	7.35879	K562	U2AF2
chr2	55232788	55232860	-	intron-Distal	3.27214	8.64886	K562	HNRNPL
chr2	55200916	55200950	-	intron-Distal,intron-Proximal	4.46454	4.49024	K562	AQR
chr2	55276808	55276827	-	intron-Distal,intron-Proximal	3.26050	8.95234	K562	TIA1
chr2	55264939	55264978	-	intron-Distal	3.76109	7.86844	K562	EXOSC5
chr2	55262987	55263034	-	intron-Distal	4.76671	12.22629	K562	EXOSC5
chr2	55261776	55261839	-	intron-Distal	4.18855	10.80489	K562	HNRNPL
chr2	55250302	55250345	-	intron-Distal	3.53162	3.27828	HepG2	HNRNPM
chr2	55262654	55262702	-	intron-Distal	3.44169	4.94908	K562	TIA1
chr2	55263004	55263066	-	intron-Distal	3.35681	8.96642	K562	KHSRP
chr2	55214582	55214616	-	intron-Distal,intron-Proximal	6.06766	13.18785	K562	AQR
chr2	55262167	55262191	-	intron-Distal	4.90379	7.06134	K562	EXOSC5
chr2	55263098	55263149	-	intron-Distal	3.21641	10.20535	K562	EXOSC5
chr2	55276037	55276125	-	intron-Distal	3.46289	5.49936	K562	NONO
chr2	55223246	55223333	-	intron-Distal	3.50910	8.04002	K562	KHSRP
chr2	55262277	55262317	-	intron-Distal	3.83055	9.72608	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RTN4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RTN4 is not available on ENCORE database.
126 RBPs can affect the levels of RTN4.

The Knockdown/knockout RNA-Seq assay for RTN4 is not available on ENCORE database.

126 RBPs can affect the gene expression of RTN4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RTN4	ENSG00000115310.13	4193.77900	5803.27120	-0.46860	4.98440	3.75750	HepG2	ABCF1
RTN4	ENSG00000115310.13	8535.64210	3902.46680	1.12900	83.40990	81.29930	HepG2	ACO1
RTN4	ENSG00000115310.13	8165.46350	5824.15230	0.48740	4.44110	3.78860	HepG2	AKAP1
RTN4	ENSG00000115310.13	6083.48790	4354.98390	0.48210	4.48520	3.17050	HepG2	AKAP8
RTN4	ENSG00000115310.13	5841.02850	3920.84150	0.57500	17.95280	16.23390	HepG2	AKAP8L
RTN4	ENSG00000115310.13	8895.11470	5499.58110	0.69360	27.09400	25.34220	HepG2	AUH
RTN4	ENSG00000115310.13	1958.78020	3157.58200	-0.68890	8.46300	7.00390	HepG2	BCLAF1
RTN4	ENSG00000115310.13	9150.00910	5800.34910	0.65750	15.82170	14.24440	HepG2	CALR
RTN4	ENSG00000115310.13	5517.33250	4578.32120	0.26910	1.97400	1.31420	HepG2	CIRBP
RTN4	ENSG00000115310.13	2899.93670	3901.66660	-0.42810	12.43090	11.22580	HepG2	CKAP4
RTN4	ENSG00000115310.13	6200.31520	4555.64710	0.44460	2.47940	1.75940	HepG2	CNOT7
RTN4	ENSG00000115310.13	5790.35520	4778.42490	0.27700	2.70080	1.60830	HepG2	CPSF7
RTN4	ENSG00000115310.13	9103.00500	5006.54240	0.86240	36.73120	34.93260	HepG2	CELF1
RTN4	ENSG00000115310.13	1653.87990	2706.61770	-0.71060	8.99190	6.71510	HepG2	DDX28
RTN4	ENSG00000115310.13	7118.66910	5578.89960	0.35150	2.90090	2.26220	HepG2	DDX3X
RTN4	ENSG00000115310.13	6577.07900	3572.93760	0.88020	12.94670	11.42310	HepG2	DDX55
RTN4	ENSG00000115310.13	7169.55250	4792.85560	0.58090	6.07730	5.19110	HepG2	DDX6
RTN4	ENSG00000115310.13	2960.49510	3733.61560	-0.33470	6.02750	5.10110	HepG2	DKC1
RTN4	ENSG00000115310.13	4062.10200	3431.19070	0.24340	2.90440	2.18690	HepG2	DNAJC21
RTN4	ENSG00000115310.13	2878.00640	3400.44370	-0.24070	2.32780	1.71940	HepG2	DNAJC2
RTN4	ENSG00000115310.13	3867.11850	2884.38810	0.42290	2.98740	1.83060	HepG2	AGO1
RTN4	ENSG00000115310.13	3594.76840	4401.75370	-0.29220	3.25420	1.97900	HepG2	EIF2S2
RTN4	ENSG00000115310.13	4191.40540	2849.99620	0.55640	6.65450	5.29950	HepG2	EIF3D
RTN4	ENSG00000115310.13	2451.09810	2957.92280	-0.27120	2.63580	1.58080	HepG2	EIF3G
RTN4	ENSG00000115310.13	3271.82840	5091.08230	-0.63790	7.05390	6.03360	HepG2	EIF4A3
RTN4	ENSG00000115310.13	3315.94180	4957.30960	-0.58010	4.72140	3.83690	HepG2	EIF4B
RTN4	ENSG00000115310.13	4255.86990	5310.95840	-0.31950	4.56590	3.53180	HepG2	EIF4G1
RTN4	ENSG00000115310.13	7118.88200	6314.15800	0.17300	2.37270	1.80820	HepG2	ETF1
RTN4	ENSG00000115310.13	5861.47410	3813.44980	0.62010	8.98650	7.49930	HepG2	EWSR1
RTN4	ENSG00000115310.13	13444.50040	5859.76490	1.19800	25.48840	23.59420	HepG2	FIP1L1
RTN4	ENSG00000115310.13	5919.89200	4765.30350	0.31290	2.23600	1.63490	HepG2	G3BP1
RTN4	ENSG00000115310.13	3236.84880	2537.52590	0.35110	2.75850	1.86160	HepG2	GEMIN5
RTN4	ENSG00000115310.13	3189.52180	3852.97460	-0.27260	2.39900	1.74890	HepG2	HNRNPC
RTN4	ENSG00000115310.13	3525.08710	4781.94880	-0.43990	10.26790	8.99870	HepG2	HNRNPF
RTN4	ENSG00000115310.13	2517.88210	6994.63650	-1.47400	10.81780	9.67290	HepG2	HNRNPLL
RTN4	ENSG00000115310.13	4831.34490	4042.58110	0.25700	2.41710	1.52710	HepG2	HNRNPM
RTN4	ENSG00000115310.13	3179.13420	3827.51200	-0.26780	2.13910	1.59810	HepG2	HNRNPU
RTN4	ENSG00000115310.13	3134.19510	4708.86560	-0.58730	11.45070	10.07440	HepG2	IGF2BP1
RTN4	ENSG00000115310.13	6693.40580	4843.70030	0.46650	4.95030	4.07060	HepG2	IGF2BP2
RTN4	ENSG00000115310.13	8138.30100	4546.11340	0.84000	3.62810	2.50260	HepG2	IGF2BP3
RTN4	ENSG00000115310.13	4101.97710	3234.02030	0.34290	3.51130	2.23350	HepG2	LARP7
RTN4	ENSG00000115310.13	6818.91590	5167.81470	0.39990	3.24680	2.56760	HepG2	MATR3
RTN4	ENSG00000115310.13	5045.78100	7132.02990	-0.49920	2.37590	1.48600	HepG2	MTPAP
RTN4	ENSG00000115310.13	6964.71930	5338.33010	0.38360	6.17320	5.03810	HepG2	NOL12
RTN4	ENSG00000115310.13	3523.73970	6201.55480	-0.81550	4.81570	3.83900	HepG2	NSUN2
RTN4	ENSG00000115310.13	4613.76730	3788.76790	0.28410	3.75440	2.78560	HepG2	PARN
RTN4	ENSG00000115310.13	3882.71850	4625.63900	-0.25260	4.04020	3.33450	HepG2	PCBP1
RTN4	ENSG00000115310.13	3279.96190	4605.74620	-0.48980	4.05150	1.88110	HepG2	PPIG
RTN4	ENSG00000115310.13	5820.11670	4706.79110	0.30620	6.11190	5.36150	HepG2	PTBP1
RTN4	ENSG00000115310.13	8195.12030	5405.44210	0.60030	13.54690	12.13160	HepG2	PUM2
RTN4	ENSG00000115310.13	6843.97870	5874.72930	0.22020	2.28140	1.49410	HepG2	RBM15
RTN4	ENSG00000115310.13	12793.29690	5277.48790	1.27740	78.31740	76.32170	HepG2	RBM22
RTN4	ENSG00000115310.13	5692.87080	4626.33890	0.29920	3.28030	2.55190	HepG2	RBM25
RTN4	ENSG00000115310.13	6213.57690	5238.18130	0.24630	4.05700	3.42440	HepG2	NELFE
RTN4	ENSG00000115310.13	4168.57260	4878.70000	-0.22690	3.42150	2.74560	HepG2	RECQL
RTN4	ENSG00000115310.13	3632.68130	5151.16360	-0.50390	7.05200	6.03610	HepG2	RPLP0
RTN4	ENSG00000115310.13	2498.56110	3565.78220	-0.51310	3.25660	2.23180	HepG2	RPS10
RTN4	ENSG00000115310.13	3683.19990	2773.27360	0.40930	5.31940	4.49910	HepG2	RPS19
RTN4	ENSG00000115310.13	3310.02830	4574.12880	-0.46670	3.28460	2.41380	HepG2	RPS3A
RTN4	ENSG00000115310.13	2511.40200	3408.65640	-0.44070	5.59680	4.73350	HepG2	SAFB2
RTN4	ENSG00000115310.13	6475.71980	4765.41880	0.44230	3.23340	2.50350	HepG2	SF3A3
RTN4	ENSG00000115310.13	3588.78610	6923.72830	-0.94810	5.91180	4.91360	HepG2	SF3B1
RTN4	ENSG00000115310.13	2615.94370	4900.32240	-0.90550	41.30910	39.53840	HepG2	SF3B4
RTN4	ENSG00000115310.13	3400.53520	6729.60100	-0.98480	2.98660	1.46710	HepG2	SFPQ
RTN4	ENSG00000115310.13	4238.88690	4885.87940	-0.20490	3.80740	3.00460	HepG2	SLBP
RTN4	ENSG00000115310.13	5017.68170	3975.21730	0.33590	5.30200	4.46090	HepG2	SMN1
RTN4	ENSG00000115310.13	14647.74560	5960.76420	1.29700	125.11190	123.04010	HepG2	SRFBP1
RTN4	ENSG00000115310.13	6364.61190	5031.25070	0.33910	3.75000	3.04200	HepG2	SRSF5
RTN4	ENSG00000115310.13	3354.66550	4698.06820	-0.48590	12.48190	11.18870	HepG2	SRSF7
RTN4	ENSG00000115310.13	5187.85470	4161.26120	0.31800	6.71690	5.92450	HepG2	SRSF9
RTN4	ENSG00000115310.13	4699.12420	3392.39880	0.47000	2.98150	1.73050	HepG2	SUB1
RTN4	ENSG00000115310.13	5453.27430	3556.78100	0.61650	7.02040	6.02170	HepG2	SUPV3L1
RTN4	ENSG00000115310.13	3761.97110	4597.53170	-0.28940	4.13150	3.46750	HepG2	TAF15
RTN4	ENSG00000115310.13	3825.33880	2383.97140	0.68210	8.59470	7.03340	HepG2	TFIP11
RTN4	ENSG00000115310.13	2711.61410	3719.70150	-0.45600	5.52770	4.86980	HepG2	TIAL1
RTN4	ENSG00000115310.13	7480.86650	5012.28150	0.57760	7.80380	6.75290	HepG2	U2AF1
RTN4	ENSG00000115310.13	2611.30250	2101.08410	0.31350	2.27900	1.58920	HepG2	UCHL5
RTN4	ENSG00000115310.13	5986.79540	4080.22740	0.55300	6.77850	5.91130	HepG2	UTP3
RTN4	ENSG00000115310.13	2858.35880	3501.26160	-0.29270	2.14200	1.49710	HepG2	XRN2
RTN4	ENSG00000115310.13	4546.67210	3717.87780	0.29020	4.42490	3.60650	HepG2	ZC3H8
RTN4	ENSG00000115310.13	7687.79050	4648.00830	0.72590	45.24140	43.72490	HepG2	ZNF622
RTN4	ENSG00000115310.13	7772.78720	9475.19260	-0.28570	2.56620	1.39660	K562	ABCF1
RTN4	ENSG00000115310.13	23564.40790	16360.03210	0.52630	5.02940	4.30270	K562	AGGF1
RTN4	ENSG00000115310.13	22597.18600	17977.43910	0.32990	3.72490	2.54550	K562	AKAP8
RTN4	ENSG00000115310.13	21913.36940	17023.41320	0.36420	4.47670	3.63860	K562	AKAP8L
RTN4	ENSG00000115310.13	4642.59140	8015.93410	-0.78790	18.68820	15.68200	K562	APOBEC3C
RTN4	ENSG00000115310.13	10469.38790	8412.13340	0.31550	3.26780	2.64000	K562	AQR
RTN4	ENSG00000115310.13	9816.49820	6772.17930	0.53550	7.10000	5.68350	K562	BOP1
RTN4	ENSG00000115310.13	23876.98240	19550.94650	0.28830	3.86660	2.44290	K562	CCDC124
RTN4	ENSG00000115310.13	8335.25650	6311.91380	0.40100	4.65960	2.99700	K562	CIRBP
RTN4	ENSG00000115310.13	6829.58340	8684.98520	-0.34670	7.20390	5.38580	K562	CPEB4
RTN4	ENSG00000115310.13	9676.79580	7200.98710	0.42620	4.15550	3.19110	K562	CPSF6
RTN4	ENSG00000115310.13	3703.72260	3063.67000	0.27360	3.46340	2.26030	K562	CSTF2
RTN4	ENSG00000115310.13	5808.05960	8986.33180	-0.62970	23.10790	21.41030	K562	DDX47
RTN4	ENSG00000115310.13	5819.08170	4976.79300	0.22550	2.86440	1.52500	K562	DDX6
RTN4	ENSG00000115310.13	9821.05200	18318.04660	-0.89930	39.88750	36.44410	K562	DKC1
RTN4	ENSG00000115310.13	4490.00550	5392.11810	-0.26410	2.72160	1.52770	K562	EIF2S1
RTN4	ENSG00000115310.13	2847.97180	3634.52300	-0.35180	2.56580	1.57180	K562	EIF3D
RTN4	ENSG00000115310.13	2241.92110	4534.15640	-1.01610	37.00380	34.10370	K562	EIF3G
RTN4	ENSG00000115310.13	3122.95960	5128.45670	-0.71560	12.91360	11.08760	K562	EIF4A3
RTN4	ENSG00000115310.13	3431.82280	4618.60240	-0.42850	5.04750	3.41810	K562	EIF4B
RTN4	ENSG00000115310.13	6654.40300	9084.65570	-0.44910	11.28250	9.44440	K562	EIF4G2
RTN4	ENSG00000115310.13	6189.95880	4850.78550	0.35160	4.11450	2.14210	K562	FASTKD2
RTN4	ENSG00000115310.13	11897.52620	7326.41240	0.69940	7.10570	5.70420	K562	FMR1
RTN4	ENSG00000115310.13	3556.69260	5333.40590	-0.58450	9.64010	8.59150	K562	FXR1
RTN4	ENSG00000115310.13	8318.58070	4840.65150	0.78100	3.61500	2.78140	K562	G3BP2
RTN4	ENSG00000115310.13	7309.73930	5881.99410	0.31340	4.92750	3.42650	K562	GLRX3
RTN4	ENSG00000115310.13	7581.16680	5201.21120	0.54350	9.91190	8.03530	K562	HNRNPA1
RTN4	ENSG00000115310.13	3316.56090	4072.38840	-0.29620	3.02830	1.82950	K562	HNRNPF
RTN4	ENSG00000115310.13	6772.08410	8121.33430	-0.26210	2.60550	1.58220	K562	HNRNPL
RTN4	ENSG00000115310.13	6926.79910	5759.89440	0.26600	3.54360	2.53150	K562	HNRNPU
RTN4	ENSG00000115310.13	16733.19330	9234.35770	0.85750	18.80750	16.87790	K562	HSPD1
RTN4	ENSG00000115310.13	8467.01390	5888.40520	0.52390	5.07680	3.51710	K562	IGF2BP2
RTN4	ENSG00000115310.13	5708.37840	4417.08940	0.36990	4.11750	2.36910	K562	LARP7
RTN4	ENSG00000115310.13	4460.24760	6189.37550	-0.47270	6.85260	5.50190	K562	MAGOH
RTN4	ENSG00000115310.13	22635.39650	17293.66960	0.38820	5.40420	3.73060	K562	MAK16
RTN4	ENSG00000115310.13	15640.79530	20238.39070	-0.37180	5.58990	4.20760	K562	MBNL1
RTN4	ENSG00000115310.13	5071.17170	6711.03010	-0.40420	4.56240	3.41830	K562	METAP2
RTN4	ENSG00000115310.13	18374.06540	14185.66420	0.37310	2.61610	1.76240	K562	NAA15
RTN4	ENSG00000115310.13	8049.35150	6870.81580	0.22830	4.37620	3.46120	K562	NSUN2
RTN4	ENSG00000115310.13	7437.57310	10849.24820	-0.54470	3.24590	1.89340	K562	PABPC1
RTN4	ENSG00000115310.13	7897.77820	6049.67530	0.38450	5.49550	3.53510	K562	PCBP1
RTN4	ENSG00000115310.13	4588.30670	5507.17460	-0.26340	2.41700	1.50530	K562	PCBP2
RTN4	ENSG00000115310.13	5029.57460	6640.91940	-0.40090	3.62000	2.66770	K562	PCBP3
RTN4	ENSG00000115310.13	3325.26670	5093.61130	-0.61520	9.55590	8.10680	K562	POLR2G
RTN4	ENSG00000115310.13	6990.53970	6013.29920	0.21710	2.01560	1.43170	K562	PTBP1
RTN4	ENSG00000115310.13	13838.72670	10544.06040	0.39220	4.93060	3.47290	K562	PUM1
RTN4	ENSG00000115310.13	21498.65340	16882.13960	0.34860	3.65610	3.04380	K562	PUS1
RTN4	ENSG00000115310.13	8469.57220	6051.97380	0.48480	8.10270	5.44070	K562	RBM17
RTN4	ENSG00000115310.13	4400.62280	5766.52380	-0.39000	4.28460	3.21050	K562	RBM22
RTN4	ENSG00000115310.13	4449.32350	3730.87360	0.25400	2.47270	1.54000	K562	RCC2
RTN4	ENSG00000115310.13	3981.29580	6068.22980	-0.60800	8.35720	6.38700	K562	NELFE
RTN4	ENSG00000115310.13	1679.66110	3364.84630	-1.00240	16.13980	14.14660	K562	RPS19
RTN4	ENSG00000115310.13	6629.29010	11430.24250	-0.78590	2.56530	1.60490	K562	RPS3
RTN4	ENSG00000115310.13	5477.80000	7646.43430	-0.48120	4.53230	2.22180	K562	SAFB2
RTN4	ENSG00000115310.13	5024.71340	2826.72750	0.82980	8.04350	5.61860	K562	SERBP1
RTN4	ENSG00000115310.13	7921.67850	6780.35370	0.22430	3.25820	2.37620	K562	SF3A3
RTN4	ENSG00000115310.13	8593.21550	6538.06300	0.39420	3.45460	2.36400	K562	SF3B1
RTN4	ENSG00000115310.13	10844.04870	19906.19650	-0.87630	3.92390	2.25930	K562	SFPQ
RTN4	ENSG00000115310.13	5457.19470	4163.58180	0.39020	4.57770	2.39860	K562	SND1
RTN4	ENSG00000115310.13	2736.79930	5894.93780	-1.10700	36.44320	33.92800	K562	SRSF1
RTN4	ENSG00000115310.13	6249.16680	5377.51350	0.21660	2.80750	1.63170	K562	SRSF7
RTN4	ENSG00000115310.13	8213.92680	4676.96640	0.81240	5.54070	3.61620	K562	SSB
RTN4	ENSG00000115310.13	11178.28200	8173.66690	0.45150	4.73620	3.02600	K562	STAU1
RTN4	ENSG00000115310.13	4104.56960	5966.27770	-0.53960	6.95120	5.78000	K562	TARDBP
RTN4	ENSG00000115310.13	3370.46700	5043.62540	-0.58150	8.81520	6.08120	K562	TBRG4
RTN4	ENSG00000115310.13	4808.26980	3932.31330	0.29000	2.12180	1.31390	K562	TIAL1
RTN4	ENSG00000115310.13	4992.73770	4178.35480	0.25680	2.28930	1.44170	K562	TRIM56
RTN4	ENSG00000115310.13	8600.03100	7080.22990	0.28040	5.39470	3.61090	K562	TROVE2
RTN4	ENSG00000115310.13	7128.33840	4689.67340	0.60400	2.99540	1.85030	K562	U2AF1
RTN4	ENSG00000115310.13	8842.93350	4844.22680	0.86820	26.54080	24.07220	K562	U2AF2
RTN4	ENSG00000115310.13	4429.42050	3385.08170	0.38780	3.59100	2.41720	K562	UCHL5
RTN4	ENSG00000115310.13	8422.11360	6233.75170	0.43400	6.59860	5.21280	K562	WDR3
RTN4	ENSG00000115310.13	4284.95440	6482.74360	-0.59730	13.02570	11.35090	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RTN4 is not available on ENCORE database.

32 RBPs can affect the splicing of RTN4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RTN4	ENSG00000115310.13	chr2	-	55201830	55201900			55200648	55200757	55209650	55209789	-0.09700	0.00005	0.03469	excluded	K562	TAF15
SE	RTN4	ENSG00000115310.13	chr2	-	55255299	55255356			55214626	55214834	55276880	55277680	0.06100	0.00096	0.07416	included	HepG2	G3BP1
SE	RTN4	ENSG00000115310.13	chr2	-	55201830	55201900			55200648	55200757	55209650	55209789	-0.07200	0.00001	0.02332	excluded	K562	RPS3
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.09200	0.00000	0.00000	excluded	K562	SF3B4
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.27000	0.00000	0.00000	excluded	HepG2	U2AF1
SE	RTN4	ENSG00000115310.13	chr2	-	55252221	55254621			55214626	55214834	55255299	55255356	0.26900	0.00001	0.00045	included	K562	AKAP8L
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.11300	0.00000	0.00000	excluded	K562	AKAP8L
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.35000	0.00000	0.00000	excluded	HepG2	U2AF2
SE	RTN4	ENSG00000115310.13	chr2	-	55255299	55255356			55214626	55214834	55277563	55277734	-0.30000	0.00259	0.02719	excluded	K562	AQR
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.07700	0.00000	0.00000	excluded	K562	AQR
SE	RTN4	ENSG00000115310.13	chr2	-	55201830	55201893			55200698	55200757	55209650	55209789	0.28300	0.00019	0.01046	included	K562	FXR1
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.18600	0.00000	0.00000	excluded	K562	PUS1
SE	RTN4	ENSG00000115310.13	chr2	-	55252221	55254621			55214626	55214834	55255299	55255356	0.72800	0.00000	0.00000	included	HepG2	PTBP1
SE	RTN4	ENSG00000115310.13	chr2	-	55252221	55254621			55214626	55214834	55255299	55255356	0.47100	0.00001	0.00164	included	K562	EFTUD2
SE	RTN4	ENSG00000115310.13	chr2	-	55255299	55255356			55214626	55214834	55276880	55277680	-0.06600	0.00161	0.07237	excluded	K562	EFTUD2
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.11100	0.00000	0.00000	excluded	K562	U2AF1
SE	RTN4	ENSG00000115310.13	chr2	-	55255299	55255356			55214626	55214834	55276880	55277680	-0.08100	0.00032	0.01231	excluded	HepG2	SF3A3
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.07600	0.00000	0.00000	excluded	HepG2	SF3A3
SE	RTN4	ENSG00000115310.13	chr2	-	55255299	55255356			55214626	55214834	55276880	55277680	0.08800	0.00012	0.02104	included	HepG2	SSB
SE	RTN4	ENSG00000115310.13	chr2	-	55201830	55201900			55200648	55200757	55209650	55209789	-0.09800	0.00000	0.00004	excluded	K562	HNRNPUL1
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.06700	0.00000	0.00000	excluded	HepG2	SF3B4
SE	RTN4	ENSG00000115310.13	chr2	-	55252221	55254621			55214626	55214834	55255299	55255356	0.22600	0.00015	0.00809	included	K562	UTP18
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.13400	0.00000	0.00000	excluded	K562	UTP18
SE	RTN4	ENSG00000115310.13	chr2	-	55201830	55201960			55200698	55200757	55209650	55209789	0.27000	0.00000	0.00000	included	K562	U2AF2
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.16900	0.00000	0.00000	excluded	K562	U2AF2
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.10400	0.00000	0.00000	excluded	K562	TARDBP
SE	RTN4	ENSG00000115310.13	chr2	-	55201830	55201900			55200648	55200757	55209650	55209789	-0.06100	0.00000	0.00012	excluded	K562	HNRNPU
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.16800	0.00000	0.00000	excluded	K562	RBM15
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.14900	0.00000	0.00000	excluded	K562	AGGF1
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55201830	55201900	-0.07700	0.00000	0.00000	excluded	K562	SF3B1
SE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003			55200698	55200757	55209650	55209789	-0.05900	0.00005	0.06282	excluded	K562	PABPC4
SE	RTN4	ENSG00000115310.13	chr2	-	55252221	55254621			55214626	55214834	55255299	55255356	0.70600	0.00000	0.00000	included	K562	PTBP1
A3SS	RTN4	ENSG00000115310.13	chr2	-	55200956	55201023			55200956	55201003	55201830	55201900	0.05300	0.00000	0.00000	longer	K562	AQR
A3SS	RTN4	ENSG00000115310.13	chr2	-	55200956	55201184			55200956	55201023	55201830	55201900	-0.66700	0.00000	0.00000	shorter	K562	AQR
A3SS	RTN4	ENSG00000115310.13	chr2	-	55200956	55201023			55200956	55201003	55209650	55209789	-0.28600	0.00003	0.00250	shorter	K562	PUS1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55200984	55201830	55201900	55200698	55200757	55209650	55209789	-0.10400	0.00209	0.09066	2included	K562	LARP4
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	0.19500	0.00000	0.00000	1included	HepG2	U2AF1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	-0.12100	0.00000	0.00000	2included	HepG2	U2AF1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	-0.07100	0.00047	0.09458	2included	HepG2	EIF3H
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55201830	55201900	55199324	55200334	55209650	55209789	0.06500	0.00007	0.00255	1included	K562	DROSHA
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	0.05600	0.00328	0.04136	1included	K562	DROSHA
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	-0.05900	0.00470	0.06611	2included	K562	PUS1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55201830	55201900	55199324	55200334	55209650	55209789	-0.05400	0.00364	0.05476	2included	K562	PUS1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55199949	55200334	55209650	55209789	-0.10300	0.00000	0.00000	2included	K562	PUS1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201023	55201830	55201900	55200698	55200757	55209650	55209789	0.08400	0.00177	0.01497	1included	K562	AQR
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201109	55201830	55201900	55200648	55200757	55209650	55209789	0.08400	0.00227	0.01857	1included	K562	AQR
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	0.09300	0.00040	0.00411	1included	K562	AQR
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55200984	55201830	55201900	55200648	55200757	55209650	55209789	0.07500	0.00060	0.00580	1included	K562	AQR
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201023	55201830	55201900	55200648	55200757	55209650	55209789	0.13200	0.00000	0.00009	1included	K562	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201023	55201830	55201960	55200648	55200757	55209650	55209789	0.15000	0.00000	0.00000	1included	K562	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	0.12600	0.00000	0.00012	1included	K562	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201960	55200698	55200757	55209650	55209789	0.13400	0.00000	0.00000	1included	K562	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	-0.07900	0.00001	0.00043	2included	K562	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	0.10200	0.00011	0.00679	1included	HepG2	SF3A3
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201893	55200698	55200757	55209650	55209789	0.06300	0.00000	0.00000	1included	HepG2	SF3A3
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	-0.09600	0.00077	0.02762	2included	HepG2	XRN2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55200984	55201830	55201900	55200698	55200757	55209650	55209789	-0.16300	0.00000	0.00000	2included	HepG2	XRN2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	-0.12200	0.00002	0.00130	2included	HepG2	DDX55
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	-0.09400	0.00045	0.01404	2included	HepG2	DDX55
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55201830	55201900	55199324	55200334	55209650	55209789	-0.10100	0.00000	0.00000	2included	HepG2	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	-0.16300	0.00000	0.00000	2included	HepG2	U2AF2
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	0.08300	0.00073	0.04825	1included	HepG2	TBRG4
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	-0.06800	0.00132	0.09762	2included	K562	ZNF800
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	-0.07400	0.00239	0.06495	2included	K562	TAF15
MXE	RTN4	ENSG00000115310.13	chr2	-	55200698	55200757	55200956	55201003	55199324	55200334	55201830	55201900	-0.05200	0.00441	0.07869	2included	K562	PPIL4
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55200984	55201830	55201900	55200698	55200757	55209650	55209789	-0.12600	0.00000	0.00021	2included	HepG2	SUPV3L1
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	0.08900	0.00126	0.02370	1included	K562	SF3B4
MXE	RTN4	ENSG00000115310.13	chr2	-	55200956	55201003	55201830	55201900	55200698	55200757	55209650	55209789	0.08700	0.00206	0.03994	1included	K562	PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RTN4

General Information

Functions

Localization

Domains (AlphaFold: RTN4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RTN4 is not avaliable on ENCORE database.

62 proteins are bound to RTN4 RNA:

eCLIP assay for RTN4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RTN4 is not available on ENCORE database.

126 RBPs can affect the gene expression of RTN4 :

The Knockdown/knockout RNA-Seq assay for RTN4 is not available on ENCORE database.

32 RBPs can affect the splicing of RTN4 :

The Knockdown/knockout RNA-Seq assay for RTN4 is not avaliable on ENCORE database.