PCOLCE

General Information

Gene Name       : PCOLCE
Gene ID             : ENSG00000106333.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PCOLCE)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCOLCEENSG00000106333.120.360.700.53ENCSR000AEF
HepG2PCOLCEENSG00000106333.1235.0020.9127.95ENCSR985KAT
K562PCOLCEENSG00000106333.1222.9520.4521.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCOLCE is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCOLCE RNA is bound by 8 proteins.  







eCLIP assay for PCOLCE is not avaliable on ENCORE database.





8 proteins are bound to PCOLCE RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7100205575100205747+3'-UTR,CDS3.955649.44011HepG2LARP4
chr7100200065100200105+5'-UTR,CDS5.206355.10753HepG2RPS3
chr7100205261100205314+CDS3.999723.16051HepG2PPIG
chr7100203406100203423+CDS3.603317.64728K562AQR
chr7100205616100205675+CDS4.706357.38299HepG2RPS3
chr7100205279100205322+CDS3.595485.29565HepG2SND1
chr7100204007100204063+CDS,intron-Proximal4.959848.01338K562AQR
chr7100201662100201701+CDS3.724344.67599HepG2SND1
chr7100201764100201840+CDS,intron-Proximal3.7595410.09138HepG2SND1
chr7100204113100204217+CDS3.825089.17735HepG2SND1
chr7100202791100202838+CDS4.2012310.65228HepG2SND1
chr7100203363100203427+CDS4.834958.33615HepG2SND1
chr7100201604100201662+CDS4.040704.95361HepG2SND1
chr7100201086100201162+CDS,intron-Proximal5.622807.96752HepG2RPS3
chr7100201734100201838+CDS,intron-Proximal3.020924.68592HepG2PPIG
chr7100201705100201761+CDS3.037746.16113HepG2SND1
chr7100201599100201679+CDS3.321233.79230K562SND1
chr7100202713100202791+CDS,intron-Proximal4.6597013.57653HepG2SND1
chr7100205074100205144+CDS,intron-Proximal4.235709.49432HepG2SND1
chr7100205413100205425+CDS3.902413.02397HepG2SND1
chr7100203317100203428+CDS3.586493.79230K562SND1
chr7100204068100204164+CDS5.5683611.66235K562ZNF622
chr7100203298100203363+CDS,intron-Proximal5.9521811.22354HepG2SND1
chr7100203423100203485+CDS,intron-Proximal4.5958312.86643K562AQR
chr7100203167100203234+intron-Distal,intron-Proximal3.539333.76326HepG2RBFOX2
chr7100203191100203292+intron-Distal,intron-Proximal3.376184.65362K562RBFOX2
chr7100202848100202901+intron-Proximal4.018593.00996K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCOLCE is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCOLCE is not available on ENCORE database.

  • 142 RBPs can affect the levels of PCOLCE.  








The Knockdown/knockout RNA-Seq assay for PCOLCE is not available on ENCORE database.





142 RBPs can affect the gene expression of PCOLCE :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCOLCEENSG00000106333.8185.35080376.13210-1.021002.288301.31140HepG2AATF
PCOLCEENSG00000106333.8623.32960944.89070-0.600203.952602.84150HepG2ABCF1
PCOLCEENSG00000106333.8305.41020695.11450-1.1865024.9065023.49620HepG2ACO1
PCOLCEENSG00000106333.8544.40430296.037000.878806.065204.66350HepG2ADAR
PCOLCEENSG00000106333.8296.787001127.69840-1.925907.851407.00480HepG2AKAP1
PCOLCEENSG00000106333.8924.76030698.410200.404904.490503.53020HepG2AKAP8L
PCOLCEENSG00000106333.81647.44620932.968500.820205.983704.85070HepG2ASCC1
PCOLCEENSG00000106333.8523.95210312.217800.746802.670701.78580HepG2BCLAF1
PCOLCEENSG00000106333.81088.72250707.655700.621403.399502.04330HepG2BUD13
PCOLCEENSG00000106333.8486.76040694.99930-0.513806.277505.34860HepG2CKAP4
PCOLCEENSG00000106333.81257.10880260.790002.2690061.3619058.83080HepG2CPSF6
PCOLCEENSG00000106333.8613.15800777.78790-0.343102.544301.48350HepG2CPSF7
PCOLCEENSG00000106333.8395.71170517.29210-0.386502.737102.09760HepG2CELF1
PCOLCEENSG00000106333.8897.77720556.197300.690706.575305.50260HepG2DAZAP1
PCOLCEENSG00000106333.8430.31760642.89780-0.579207.493006.23370HepG2DDX19B
PCOLCEENSG00000106333.8188.06930303.99620-0.692804.578103.10920HepG2DDX1
PCOLCEENSG00000106333.8823.18130414.066400.991207.875706.78980HepG2DDX21
PCOLCEENSG00000106333.8487.086001080.01960-1.148804.292903.52820HepG2DDX3X
PCOLCEENSG00000106333.81024.85480678.878200.594105.376904.01300HepG2DDX5
PCOLCEENSG00000106333.8740.61300287.504601.365009.623407.91580HepG2DHX30
PCOLCEENSG00000106333.81880.04850665.045501.4991063.4266061.32740HepG2DKC1
PCOLCEENSG00000106333.8714.37080298.076801.260906.385905.35480HepG2DNAJC21
PCOLCEENSG00000106333.8238.72960534.79860-1.1636013.2462010.88030HepG2EFTUD2
PCOLCEENSG00000106333.81548.62210891.860500.796006.759705.86010HepG2EIF2S1
PCOLCEENSG00000106333.8165.77030520.79550-1.6515021.9163019.65350HepG2EIF3D
PCOLCEENSG00000106333.8297.81840517.24810-0.796406.338303.46690HepG2EIF3H
PCOLCEENSG00000106333.8386.50210985.35040-1.350205.405004.51280HepG2EIF4A3
PCOLCEENSG00000106333.8465.98830959.87370-1.042602.665701.98950HepG2EIF4B
PCOLCEENSG00000106333.8363.63690548.73890-0.593605.660104.53600HepG2EIF4G1
PCOLCEENSG00000106333.81454.65180525.653901.4684028.4324026.11100HepG2EIF4G2
PCOLCEENSG00000106333.8170.64550724.57610-2.0861056.8538054.78430HepG2ETF1
PCOLCEENSG00000106333.8233.33620679.28290-1.5416028.1329025.78280HepG2EWSR1
PCOLCEENSG00000106333.8623.51820465.553400.421403.197501.92820HepG2FAM120A
PCOLCEENSG00000106333.8435.14320954.04010-1.1326010.973909.58650HepG2FIP1L1
PCOLCEENSG00000106333.8772.06150261.258601.563102.247201.34140HepG2FTO
PCOLCEENSG00000106333.8461.129601012.63970-1.134904.764303.74880HepG2FUBP3
PCOLCEENSG00000106333.81489.31320979.958600.603803.297502.31900HepG2G3BP2
PCOLCEENSG00000106333.8697.81180463.687400.589604.815803.63350HepG2GEMIN5
PCOLCEENSG00000106333.8616.51410362.520500.766004.631803.31120HepG2GNB2L1
PCOLCEENSG00000106333.82236.55640295.597402.9195094.2976091.38550HepG2GPKOW
PCOLCEENSG00000106333.8131.56010394.47660-1.584202.813701.43040HepG2HLTF
PCOLCEENSG00000106333.8766.13400300.933001.3481012.2509011.04890HepG2HNRNPA1
PCOLCEENSG00000106333.8453.63420242.154400.9055010.208608.94170HepG2HNRNPF
PCOLCEENSG00000106333.83490.26730282.096603.6290020.0047018.55220HepG2HNRNPLL
PCOLCEENSG00000106333.8288.61430658.04510-1.1890014.9238013.01470HepG2HNRNPM
PCOLCEENSG00000106333.81813.24390725.154601.3221019.8309016.91010HepG2HSPD1
PCOLCEENSG00000106333.8588.40020238.450001.3030019.6914017.95380HepG2IGF2BP1
PCOLCEENSG00000106333.83335.72780937.616201.8308053.0580050.58450HepG2IGF2BP2
PCOLCEENSG00000106333.8516.98400241.183901.099904.043202.55110HepG2KHDRBS1
PCOLCEENSG00000106333.81502.63060943.357300.671502.460301.52550HepG2KHSRP
PCOLCEENSG00000106333.8964.37370635.444100.6017010.627408.75940HepG2KIF1C
PCOLCEENSG00000106333.8263.24920355.27110-0.432502.464301.39770HepG2LARP7
PCOLCEENSG00000106333.8486.384201000.75830-1.040903.436202.73960HepG2MATR3
PCOLCEENSG00000106333.8313.00650545.02670-0.800104.162402.88460HepG2METAP2
PCOLCEENSG00000106333.81189.48790771.817400.623906.891505.67150HepG2MSI2
PCOLCEENSG00000106333.8868.72810287.764101.593908.258906.55010HepG2MTPAP
PCOLCEENSG00000106333.8287.070401024.22760-1.835107.325006.31770HepG2NCBP2
PCOLCEENSG00000106333.8506.51180261.395000.954306.117204.00830HepG2NOLC1
PCOLCEENSG00000106333.8965.29260324.807701.571305.426603.86710HepG2NONO
PCOLCEENSG00000106333.8636.77860250.153201.3479017.7387016.04270HepG2NSUN2
PCOLCEENSG00000106333.82775.34330911.663001.6060018.8109016.97670HepG2PABPC4
PCOLCEENSG00000106333.81180.47540995.375500.246002.336001.76850HepG2PCBP1
PCOLCEENSG00000106333.81076.55720704.511900.611603.394401.44150HepG2PPIG
PCOLCEENSG00000106333.8581.71510296.589400.971706.659305.55420HepG2PPIL4
PCOLCEENSG00000106333.8688.10140408.307200.752903.144401.85410HepG2PRPF6
PCOLCEENSG00000106333.8111.04870272.38060-1.294404.086103.12810HepG2PRPF8
PCOLCEENSG00000106333.8487.244601012.86200-1.0557024.4606023.14130HepG2PTBP1
PCOLCEENSG00000106333.81514.71730526.484101.5245040.0646038.12750HepG2PUF60
PCOLCEENSG00000106333.8267.49910558.89220-1.0630017.8912016.65180HepG2PUM1
PCOLCEENSG00000106333.8889.19730558.480200.670908.438207.29540HepG2PUM2
PCOLCEENSG00000106333.8992.14150708.024500.486606.932406.03370HepG2PUS1
PCOLCEENSG00000106333.8356.959601096.89010-1.6196043.1919041.26910HepG2QKI
PCOLCEENSG00000106333.844.55830374.63650-3.071706.724705.65140HepG2RAVER1
PCOLCEENSG00000106333.8444.61280249.738500.832005.712903.08390HepG2RBM14
PCOLCEENSG00000106333.8625.44570900.24690-0.525404.020303.00860HepG2RBM15
PCOLCEENSG00000106333.8178.18780605.60760-1.7650033.8425032.42160HepG2RBM22
PCOLCEENSG00000106333.8747.631301049.87270-0.489806.348705.46950HepG2RECQL
PCOLCEENSG00000106333.8523.24730254.123201.041904.830203.77300HepG2RPS3A
PCOLCEENSG00000106333.878.72340269.41410-1.775005.607304.52470HepG2RRP9
PCOLCEENSG00000106333.8530.29360296.126200.8405011.2622010.10100HepG2SAFB2
PCOLCEENSG00000106333.8786.14040325.740101.271003.689202.07920HepG2SF1
PCOLCEENSG00000106333.8136.96850279.20350-1.027506.920305.84580HepG2SF3B1
PCOLCEENSG00000106333.8541.446101054.46580-0.9616020.2836018.92340HepG2SF3B4
PCOLCEENSG00000106333.8827.77400504.828600.7133012.3247011.02470HepG2SLBP
PCOLCEENSG00000106333.841.43530684.00470-4.04510124.92920122.85930HepG2SRFBP1
PCOLCEENSG00000106333.8411.279801100.65620-1.4202041.1143039.76390HepG2SRSF1
PCOLCEENSG00000106333.8141.57210300.47060-1.085706.199704.65090HepG2SRSF3
PCOLCEENSG00000106333.8910.55840519.833700.808604.234403.48870HepG2SRSF5
PCOLCEENSG00000106333.8476.28330895.46150-0.9108018.6483017.44790HepG2SRSF9
PCOLCEENSG00000106333.82170.75020593.866001.86990108.42140106.46440HepG2SSB
PCOLCEENSG00000106333.8381.75770731.53670-0.938304.354602.67760HepG2SUGP2
PCOLCEENSG00000106333.81453.33040351.768302.0466038.8164036.86010HepG2SUPV3L1
PCOLCEENSG00000106333.8648.02370989.37410-0.610508.013707.13950HepG2TAF15
PCOLCEENSG00000106333.8711.54080275.032301.3712018.4063016.83310HepG2TARDBP
PCOLCEENSG00000106333.81934.19830710.009501.445702.331001.35110HepG2TBRG4
PCOLCEENSG00000106333.8717.55360909.03490-0.341202.728201.89720HepG2TIA1
PCOLCEENSG00000106333.8616.84070323.065300.9330012.2229011.30190HepG2TIAL1
PCOLCEENSG00000106333.8862.96980326.008601.4043022.9748021.54920HepG2TRIM56
PCOLCEENSG00000106333.8840.17230514.362600.707808.341306.69000HepG2TUFM
PCOLCEENSG00000106333.8363.03780815.93690-1.1683012.1924010.84450HepG2U2AF1
PCOLCEENSG00000106333.8360.31580544.45120-0.595503.216702.31440HepG2UBE2L3
PCOLCEENSG00000106333.8638.39660321.904000.987704.312803.04370HepG2UPF2
PCOLCEENSG00000106333.8552.47190959.28810-0.7961013.9801011.87350HepG2UTP18
PCOLCEENSG00000106333.8572.24920901.04300-0.6550010.151709.11850HepG2UTP3
PCOLCEENSG00000106333.8970.17510346.279701.4862020.2201018.34410HepG2XRN2
PCOLCEENSG00000106333.8190.44000374.57230-0.975908.144606.09030K562AARS
PCOLCEENSG00000106333.81079.10450537.985901.0041023.7034022.15490K562AGGF1
PCOLCEENSG00000106333.8825.14310591.216700.480904.397003.09260K562AKAP8
PCOLCEENSG00000106333.81456.21080559.811301.379109.888608.55460K562AKAP8L
PCOLCEENSG00000106333.8430.97430594.05650-0.463002.910801.63740K562APOBEC3C
PCOLCEENSG00000106333.8778.11930587.400800.405504.057702.93190K562ATP5C1
PCOLCEENSG00000106333.8496.14690291.473400.767307.896905.59350K562BCCIP
PCOLCEENSG00000106333.8893.22520642.881400.474404.823503.22610K562CCDC124
PCOLCEENSG00000106333.8878.19480574.489400.612203.412002.17680K562CPEB4
PCOLCEENSG00000106333.8374.18690213.660400.808306.642504.89990K562CSTF2
PCOLCEENSG00000106333.8767.60060575.570500.415304.153002.65210K562DDX21
PCOLCEENSG00000106333.8349.99790594.42710-0.764209.586008.45960K562DDX47
PCOLCEENSG00000106333.8603.72050407.934300.565405.756503.62610K562DDX6
PCOLCEENSG00000106333.8703.50780417.126500.754004.462802.70850K562DHX30
PCOLCEENSG00000106333.8856.79060602.317600.508306.368604.95560K562DKC1
PCOLCEENSG00000106333.8561.59060441.964500.345502.668501.48710K562EIF2S1
PCOLCEENSG00000106333.8224.18350345.45210-0.623804.626703.72600K562EIF2S2
PCOLCEENSG00000106333.8591.43660320.927400.8819010.429807.97650K562EXOSC5
PCOLCEENSG00000106333.8220.00410355.96270-0.694204.191802.75920K562FKBP4
PCOLCEENSG00000106333.8186.54810437.16140-1.2286015.7831014.44760K562FXR1
PCOLCEENSG00000106333.8330.07000226.734300.541703.144601.59020K562G3BP1
PCOLCEENSG00000106333.835.41000148.12360-2.064606.368405.19750K562G3BP2
PCOLCEENSG00000106333.8740.93470343.879501.1073015.3048013.40430K562GPKOW
PCOLCEENSG00000106333.8709.00420460.304800.623105.388404.32930K562GRSF1
PCOLCEENSG00000106333.8591.02280356.179200.730506.462703.51840K562GRWD1
PCOLCEENSG00000106333.8524.18080400.714800.387402.084901.39110K562HSPD1
PCOLCEENSG00000106333.8477.86780237.191301.010502.269601.36650K562IGF2BP2
PCOLCEENSG00000106333.8898.81080594.055300.597306.581305.18410K562KIF1C
PCOLCEENSG00000106333.8677.09510415.673500.703805.908203.64190K562LIN28B
PCOLCEENSG00000106333.8770.48200568.693200.438003.833402.49820K562MAK16
PCOLCEENSG00000106333.8339.16840248.727000.447302.479801.61020K562MATR3
PCOLCEENSG00000106333.81054.85970665.498200.664408.930607.11460K562MBNL1
PCOLCEENSG00000106333.8478.21470736.51180-0.623105.984503.74680K562NOL12
PCOLCEENSG00000106333.8432.25870238.261700.859203.940302.32920K562NONO
PCOLCEENSG00000106333.8754.29310575.839100.389404.121003.23010K562NSUN2
PCOLCEENSG00000106333.8637.51940403.483800.659905.459503.19460K562NUSAP1
PCOLCEENSG00000106333.8707.52320356.542400.988605.102203.64250K562PABPN1
PCOLCEENSG00000106333.8525.47040335.525400.647104.965803.81550K562PPIG
PCOLCEENSG00000106333.8813.66200423.864400.940704.352102.36410K562PPP1R8
PCOLCEENSG00000106333.8108.32450234.91950-1.116802.568501.84540K562PRPF8
PCOLCEENSG00000106333.8893.59460367.329201.2824021.3136018.40020K562PSIP1
PCOLCEENSG00000106333.8171.56420242.15400-0.497202.443801.81310K562PTBP1
PCOLCEENSG00000106333.8480.79000734.56750-0.611505.280504.15570K562PUF60
PCOLCEENSG00000106333.81009.21500765.539900.398603.540802.45620K562PUM2
PCOLCEENSG00000106333.8931.82460540.925300.784505.414304.60980K562RBM15
PCOLCEENSG00000106333.8772.79690568.176600.443604.320903.31900K562SF3A3
PCOLCEENSG00000106333.81329.83080397.473101.7422014.2249010.61910K562SFPQ
PCOLCEENSG00000106333.8739.96180410.206400.851005.803803.96380K562SLBP
PCOLCEENSG00000106333.8592.11850317.801200.897709.329907.11480K562SRFBP1
PCOLCEENSG00000106333.8454.11560234.739200.951905.676803.23970K562SRP68
PCOLCEENSG00000106333.8330.20910237.396100.476002.451301.77880K562SRSF1
PCOLCEENSG00000106333.8510.22830319.219200.676505.240703.70870K562SRSF4
PCOLCEENSG00000106333.8360.36480224.213900.684504.626703.20700K562SRSF5
PCOLCEENSG00000106333.8549.18450354.682500.630704.550702.87240K562STAU1
PCOLCEENSG00000106333.8346.29460240.250700.527402.887502.16520K562TARDBP
PCOLCEENSG00000106333.8354.55820231.751500.613304.034403.01810K562TIA1
PCOLCEENSG00000106333.8630.10030353.295300.834607.286605.71270K562TIAL1
PCOLCEENSG00000106333.8334.33940227.440000.555703.061901.90350K562TRA2A
PCOLCEENSG00000106333.8722.04350375.458900.943305.443404.00920K562TRIM56
PCOLCEENSG00000106333.8648.51240345.730700.907409.490506.84720K562TRIP6
PCOLCEENSG00000106333.81265.11600831.094700.606107.206705.12890K562TROVE2
PCOLCEENSG00000106333.873.28350148.11030-1.015102.607001.82730K562U2AF2
PCOLCEENSG00000106333.8385.63060240.612900.680402.464501.50960K562UCHL5
PCOLCEENSG00000106333.8704.81380471.818200.578904.424502.89830K562UTP3
PCOLCEENSG00000106333.8440.11280543.27010-0.303802.242501.47340K562WDR43
PCOLCEENSG00000106333.8408.36860245.178000.735902.982201.70850K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCOLCE is not available on ENCORE database.





1 RBPs can affect the splicing of PCOLCE :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPCOLCEENSG00000106333.8chr7+1002031271002034351002032981002034351002026131002028380.086000.021060.09960longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PCOLCE is not avaliable on ENCORE database.