COL2A1

General Information

Gene Name       : COL2A1
Gene ID             : ENSG00000139219.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL2A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL2A1ENSG00000139219.180.160.080.12ENCSR000AEF
HepG2COL2A1ENSG00000139219.1818.3210.9314.62ENCSR985KAT
K562COL2A1ENSG00000139219.180.000.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL2A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL2A1 RNA is bound by 11 proteins.  







eCLIP assay for COL2A1 is not avaliable on ENCORE database.





11 proteins are bound to COL2A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr124836689148366975-3'-UTR,intron-Distal,intron-Proximal3.195893.21969HepG2ZC3H11A
chr124836713248367202-3'-UTR,CDS,intron-Distal,intron-Proximal3.214225.00851HepG2LARP4
chr124836683748366918-3'-UTR,intron-Distal,intron-Proximal3.168995.37546HepG2LSM11
chr124836692748366973-3'-UTR,intron-Distal,intron-Proximal3.647324.48398HepG2LSM11
chr124839809248398154-5'-UTR,CDS,intron-Distal,intron-Proximal3.7855110.19267HepG2DDX3X
chr124839821248398255-5'-UTR,intron-Distal,intron-Proximal3.500849.65187HepG2DDX3X
chr124839815448398212-5'-UTR,intron-Distal,intron-Proximal4.3828820.67574HepG2DDX3X
chr124837788548377904-CDS,intron-Distal5.3050613.50799HepG2PPIG
chr124837329448373332-CDS,intron-Distal3.329157.60977HepG2PPIG
chr124837969448379711-CDS,intron-Distal,intron-Proximal4.705189.28243HepG2PPIG
chr124839220248392213-CDS,intron-Distal4.1584910.14097HepG2PPIG
chr124838967248389702-CDS,intron-Distal3.996714.86518HepG2BUD13
chr124838012048380172-CDS,intron-Distal4.9531613.94155HepG2PPIG
chr124837188248371898-CDS,intron-Distal4.123309.56105HepG2PPIG
chr124838020448380226-CDS,intron-Distal4.3709312.47570HepG2PPIG
chr124838061948380637-CDS,intron-Distal4.1765310.72269HepG2PPIG
chr124837471248374750-CDS,intron-Distal4.1889710.69967HepG2PPIG
chr124837207848372102-CDS,intron-Distal4.2072310.72269HepG2PPIG
chr124838967448389702-CDS,intron-Distal4.8347918.61853HepG2PPIG
chr124839371848393752-CDS,intron-Distal3.791043.56019HepG2GRWD1
chr124837434948374383-CDS,intron-Distal3.897863.19682HepG2PABPN1
chr124837437048374445-CDS,intron-Distal,intron-Proximal4.2874110.23724HepG2LIN28B
chr124839035148390383-CDS,intron-Distal4.3939615.80856HepG2PPIG
chr124838781448387830-CDS,intron-Distal3.9909712.59726HepG2PPIG
chr124837748048377502-CDS,intron-Distal4.652029.58174HepG2PPIG
chr124839033048390351-CDS,intron-Distal,intron-Proximal5.2002024.40973HepG2PPIG
chr124837089248370934-CDS,intron-Distal6.3143919.72982HepG2PPIG
chr124837959548379608-CDS,intron-Distal,intron-Proximal4.718929.28243HepG2PPIG
chr124837514748375173-CDS,intron-Distal3.977349.30518HepG2PPIG
chr124839167948391707-CDS,intron-Distal,intron-Proximal4.2189216.32081HepG2PPIG
chr124837207448372108-CDS,intron-Distal3.780403.37376HepG2LSM11
chr124838006948380121-CDS,intron-Distal,intron-Proximal5.2205315.57890HepG2PRPF8
chr124839370548393717-CDS,intron-Distal3.416397.16988HepG2PPIG
chr124837116448371199-CDS,intron-Distal3.606219.94493HepG2PPIG
chr124838301148383035-CDS,intron-Distal4.9548011.08513HepG2PPIG
chr124837555948375603-CDS,intron-Distal4.1930915.13430HepG2PPIG
chr124836788948367942-CDS,intron-Distal4.330164.25576HepG2PABPN1
chr124837088448370933-CDS,intron-Distal,intron-Proximal4.225443.14668HepG2LSM11
chr124838825148388256-CDS,intron-Distal3.762456.70085HepG2PPIG
chr124837588948375899-CDS,intron-Distal,intron-Proximal3.877166.82013HepG2PPIG
chr124838945448389506-CDS,intron-Distal,intron-Proximal4.135167.87148HepG2PRPF8
chr124837115148371193-CDS,intron-Distal4.257503.37376HepG2LSM11
chr124837111948371195-CDS,intron-Distal3.444416.74689HepG2PABPN1
chr124838357948383588-CDS,intron-Distal4.286108.98325HepG2PPIG
chr124838148048381491-CDS,intron-Distal4.508887.79455HepG2PPIG
chr124838139748381420-CDS,intron-Distal5.2051812.90078HepG2PPIG
chr124838670248386714-CDS,intron-Distal3.8549611.88486HepG2PPIG
chr124837440148374443-CDS,intron-Distal4.6389417.29219HepG2PPIG
chr124838666148386702-CDS,intron-Distal4.2167416.08337HepG2PPIG
chr124837786948377885-CDS,intron-Distal,intron-Proximal5.1858511.99167HepG2PPIG
chr124838357348383589-CDS,intron-Distal,intron-Proximal4.567594.97391HepG2RPS3
chr124839181448391846-CDS,intron-Proximal4.0560116.48225HepG2PPIG
chr124837469848374712-CDS,intron-Distal4.0167310.22649HepG2PPIG
chr124839379948393871-CDS,intron-Distal3.281083.73238HepG2LIN28B
chr124837469748374737-CDS,intron-Distal,intron-Proximal4.011146.18596HepG2LIN28B
chr124838820648388247-CDS,intron-Distal,intron-Proximal4.0425817.42840HepG2PPIG
chr124839141948391474-CDS,intron-Distal4.5903514.94352HepG2PPIG
chr124837517348375178-CDS,intron-Distal3.920377.55042HepG2PPIG
chr124838724148387284-CDS,intron-Distal4.0217915.06566HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL2A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL2A1 is not available on ENCORE database.

  • 143 RBPs can affect the levels of COL2A1.  








The Knockdown/knockout RNA-Seq assay for COL2A1 is not available on ENCORE database.





143 RBPs can affect the gene expression of COL2A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL2A1ENSG00000139219.13699.93090990.11970-0.500402.583101.54390HepG2AATF
COL2A1ENSG00000139219.131266.479801708.93810-0.432307.878006.95820HepG2ACO1
COL2A1ENSG00000139219.132511.80020596.469202.0741019.0043016.80430HepG2ADAR
COL2A1ENSG00000139219.13744.107903303.06020-2.1502028.4233026.93300HepG2AKAP1
COL2A1ENSG00000139219.133162.223502416.210200.388107.734606.67960HepG2AUH
COL2A1ENSG00000139219.13657.461901036.67510-0.657003.697402.61540HepG2BCCIP
COL2A1ENSG00000139219.13834.61630395.912201.075808.505107.52500HepG2BOP1
COL2A1ENSG00000139219.131762.326101085.309300.699309.911507.73350HepG2BUD13
COL2A1ENSG00000139219.13638.22980938.41580-0.556206.109605.01880HepG2CALR
COL2A1ENSG00000139219.132610.530201182.003601.1430015.9135013.73550HepG2CCAR1
COL2A1ENSG00000139219.135777.348602596.425601.1538026.1811024.14300HepG2CIRBP
COL2A1ENSG00000139219.131225.62550363.436301.7536011.6133010.31250HepG2CPSF6
COL2A1ENSG00000139219.13897.95760611.684400.553806.851105.26180HepG2YBX3
COL2A1ENSG00000139219.13965.83090640.109700.593403.603502.39080HepG2CSTF2
COL2A1ENSG00000139219.13595.704901014.28610-0.767803.495501.89750HepG2CSTF2T
COL2A1ENSG00000139219.131809.700201514.018400.257303.623702.79520HepG2DAZAP1
COL2A1ENSG00000139219.131004.003401580.42200-0.6545016.7698015.11370HepG2DDX19B
COL2A1ENSG00000139219.13337.98150612.51320-0.8578010.596708.56560HepG2DDX1
COL2A1ENSG00000139219.13705.139401091.18400-0.629905.759704.81960HepG2DDX21
COL2A1ENSG00000139219.131316.158001068.817400.300202.208501.40320HepG2DDX24
COL2A1ENSG00000139219.13351.13010953.55460-1.441307.996305.93810HepG2DDX27
COL2A1ENSG00000139219.13190.185301019.35340-2.4222019.0058017.24640HepG2DDX55
COL2A1ENSG00000139219.131607.66630412.719401.9616010.515408.69450HepG2DDX59
COL2A1ENSG00000139219.13670.076501097.00760-0.711208.021906.39320HepG2DDX5
COL2A1ENSG00000139219.13986.69270600.593400.7161011.5401010.18590HepG2DNAJC21
COL2A1ENSG00000139219.13532.845001146.03910-1.1049017.4347014.81360HepG2EFTUD2
COL2A1ENSG00000139219.133692.602201005.672901.8764042.0718038.40720HepG2AGO1
COL2A1ENSG00000139219.134718.285802612.529600.8527013.7239012.47210HepG2EIF2S1
COL2A1ENSG00000139219.13779.316601098.89300-0.495805.318703.72850HepG2EIF2S2
COL2A1ENSG00000139219.13875.795501116.02860-0.349702.487801.62590HepG2EIF3D
COL2A1ENSG00000139219.131425.197502886.69850-1.018307.281406.24610HepG2EIF4A3
COL2A1ENSG00000139219.132545.862101430.930100.8311014.2242012.48350HepG2EIF4G2
COL2A1ENSG00000139219.132529.986501254.944401.0114019.1363016.69120HepG2ESF1
COL2A1ENSG00000139219.133263.231702774.135200.234201.820101.31140HepG2ETF1
COL2A1ENSG00000139219.13895.852901669.74300-0.8983017.1870015.24460HepG2EWSR1
COL2A1ENSG00000139219.13305.648001040.38980-1.7672023.0340020.41960HepG2FASTKD2
COL2A1ENSG00000139219.13862.512901463.05090-0.762408.090206.85130HepG2FIP1L1
COL2A1ENSG00000139219.131569.092902270.00610-0.532807.094905.87150HepG2FUBP3
COL2A1ENSG00000139219.131475.492001063.257600.472602.580301.50160HepG2FUS
COL2A1ENSG00000139219.133704.567102913.931100.346202.742902.05480HepG2FXR1
COL2A1ENSG00000139219.134776.811002702.375900.821708.961807.79920HepG2G3BP1
COL2A1ENSG00000139219.134382.264502869.862500.610607.602206.11110HepG2G3BP2
COL2A1ENSG00000139219.131581.23620993.651200.670107.668806.20660HepG2GEMIN5
COL2A1ENSG00000139219.131549.232101208.825000.357802.221801.31410HepG2GNB2L1
COL2A1ENSG00000139219.132610.65790411.893702.6640054.2479051.86020HepG2GPKOW
COL2A1ENSG00000139219.131152.09140646.515300.833404.404003.00600HepG2GRSF1
COL2A1ENSG00000139219.13728.705501122.14550-0.622905.208202.68450HepG2GRWD1
COL2A1ENSG00000139219.13376.672701002.63320-1.412408.747106.18880HepG2GTF2F1
COL2A1ENSG00000139219.132533.171201631.413500.6347016.8632014.80240HepG2HDGF
COL2A1ENSG00000139219.13452.180601020.59370-1.174406.479804.27590HepG2HLTF
COL2A1ENSG00000139219.132529.90800606.347802.0608078.8279076.42890HepG2HNRNPA1
COL2A1ENSG00000139219.13614.264601391.48940-1.1797034.2494031.72590HepG2HNRNPA2B1
COL2A1ENSG00000139219.131014.21810604.876300.745604.547502.60500HepG2HNRNPD
COL2A1ENSG00000139219.131159.82510345.109001.7487048.6191046.31640HepG2HNRNPF
COL2A1ENSG00000139219.133432.157201379.115201.3153093.7339090.84880HepG2HNRNPL
COL2A1ENSG00000139219.131140.66720393.085901.5369017.9459016.54660HepG2HNRNPLL
COL2A1ENSG00000139219.13918.52860670.006200.455105.736604.88820HepG2HNRNPU
COL2A1ENSG00000139219.132030.975001211.950500.744707.184505.24840HepG2HSPD1
COL2A1ENSG00000139219.131486.79650339.826202.1292075.5522072.74800HepG2IGF2BP1
COL2A1ENSG00000139219.134445.223702746.649100.694509.489108.32290HepG2IGF2BP2
COL2A1ENSG00000139219.131349.795902578.64670-0.933903.926302.75420HepG2IGF2BP3
COL2A1ENSG00000139219.13413.01240684.38630-0.7286012.1532010.73980HepG2ILF2
COL2A1ENSG00000139219.131029.22160680.848400.596002.992301.60800HepG2ILF3
COL2A1ENSG00000139219.131525.69260666.052601.1957016.4061013.38020HepG2KHDRBS1
COL2A1ENSG00000139219.135279.127102763.140200.933905.940204.41840HepG2KHSRP
COL2A1ENSG00000139219.13614.888901069.94920-0.7991010.135607.23720HepG2CCAR2
COL2A1ENSG00000139219.13943.599101184.31720-0.327802.463801.39740HepG2LARP7
COL2A1ENSG00000139219.13739.540601188.09750-0.684006.687604.20330HepG2LSM11
COL2A1ENSG00000139219.13599.619401167.95760-0.961907.269305.65290HepG2METAP2
COL2A1ENSG00000139219.131797.139701183.744300.602207.849406.55120HepG2MSI2
COL2A1ENSG00000139219.131641.73910401.092302.0331011.238709.28180HepG2MTPAP
COL2A1ENSG00000139219.131934.92330994.079000.9607018.8999015.91970HepG2NAA15
COL2A1ENSG00000139219.132005.433802999.90670-0.581004.004603.24730HepG2NCBP2
COL2A1ENSG00000139219.133405.58320936.466701.8625022.4834019.22690HepG2NONO
COL2A1ENSG00000139219.131919.63710348.610802.4610036.5601034.36270HepG2NSUN2
COL2A1ENSG00000139219.13253.27130638.42960-1.333805.639604.34010HepG2PABPC1
COL2A1ENSG00000139219.134442.125502670.778300.7339010.036508.68310HepG2PABPC4
COL2A1ENSG00000139219.13909.30550663.170400.455303.374602.44800HepG2PARN
COL2A1ENSG00000139219.134430.365102821.663000.6508018.9183017.56330HepG2PCBP1
COL2A1ENSG00000139219.132523.55000597.589102.0781052.2831049.33940HepG2PPIL4
COL2A1ENSG00000139219.132279.961501106.488101.0429038.3756036.18430HepG2PRPF4
COL2A1ENSG00000139219.13445.60390785.88480-0.818603.325702.44790HepG2PRPF8
COL2A1ENSG00000139219.131861.456402871.13540-0.625209.892708.98370HepG2PTBP1
COL2A1ENSG00000139219.133139.929301433.162801.1314030.5062028.81370HepG2PUF60
COL2A1ENSG00000139219.13546.261501521.40810-1.4777067.1334065.03880HepG2PUM1
COL2A1ENSG00000139219.136464.822901520.270402.0882029.0469027.04120HepG2PUM2
COL2A1ENSG00000139219.133415.289101740.632200.9723023.6062022.13390HepG2PUS1
COL2A1ENSG00000139219.132504.874603109.53670-0.312003.929203.20280HepG2QKI
COL2A1ENSG00000139219.13169.49940970.84400-2.5180020.4922018.74550HepG2RAVER1
COL2A1ENSG00000139219.131190.80170661.343700.848408.258905.24800HepG2RBM14
COL2A1ENSG00000139219.13390.803701520.55210-1.9601071.6139068.54220HepG2RBM15
COL2A1ENSG00000139219.131248.358002318.66320-0.8933021.0242019.86800HepG2RBM22
COL2A1ENSG00000139219.135050.731802822.094500.8396020.3907018.67360HepG2RBM25
COL2A1ENSG00000139219.131471.49850674.627901.1250010.402507.62780HepG2RBM47
COL2A1ENSG00000139219.131825.868201159.679700.654806.992905.31590HepG2RCC2
COL2A1ENSG00000139219.132691.652103195.30820-0.247503.461702.87120HepG2NELFE
COL2A1ENSG00000139219.133990.943502975.976900.423309.572508.52810HepG2RECQL
COL2A1ENSG00000139219.13899.74530371.881901.274606.990005.97830HepG2RPLP0
COL2A1ENSG00000139219.13545.332701086.04160-0.9939017.0434015.70670HepG2RPS19
COL2A1ENSG00000139219.131713.24340701.839601.2874011.560309.97270HepG2RPS3A
COL2A1ENSG00000139219.13843.803001344.45890-0.672007.885006.07890HepG2RPS5
COL2A1ENSG00000139219.13180.32020777.35710-2.1080019.9238018.17950HepG2RRP9
COL2A1ENSG00000139219.13336.244701057.10410-1.6525011.207908.35720HepG2RTF1
COL2A1ENSG00000139219.13471.73540596.66030-0.338902.703902.06520HepG2SAFB2
COL2A1ENSG00000139219.131212.23360660.885200.875108.912206.68060HepG2SART3
COL2A1ENSG00000139219.131115.86210666.328700.743804.990802.96270HepG2SBDS
COL2A1ENSG00000139219.13267.615801089.85900-2.0259048.1851044.91010HepG2SERBP1
COL2A1ENSG00000139219.132510.510602989.24450-0.251803.519702.86380HepG2SF3B4
COL2A1ENSG00000139219.133841.316601374.266801.48280117.83670114.94890HepG2SLBP
COL2A1ENSG00000139219.13929.06480695.790000.417005.426704.57710HepG2SMN1
COL2A1ENSG00000139219.13300.61130991.83600-1.7222010.232008.31460HepG2SMNDC1
COL2A1ENSG00000139219.13231.837002618.84380-3.4977099999.99999305.69900HepG2SRFBP1
COL2A1ENSG00000139219.131337.364203120.11510-1.2222063.2524061.66790HepG2SRSF1
COL2A1ENSG00000139219.132973.476601415.090401.0712012.0348010.85590HepG2SRSF5
COL2A1ENSG00000139219.13980.78140339.084701.5322043.0045040.95360HepG2SRSF7
COL2A1ENSG00000139219.131346.519502538.37210-0.9147035.0058033.46730HepG2SRSF9
COL2A1ENSG00000139219.1311411.878202273.774702.3273071.4732069.76520HepG2SSB
COL2A1ENSG00000139219.13235.97890976.89730-2.0495033.3611030.11020HepG2STAU1
COL2A1ENSG00000139219.131048.81920610.757600.780006.244904.53610HepG2STIP1
COL2A1ENSG00000139219.133001.590001609.304100.8992032.1269030.40890HepG2SUCLG1
COL2A1ENSG00000139219.13601.671701222.59510-1.022907.604605.43660HepG2SUGP2
COL2A1ENSG00000139219.132024.650901014.616000.9966012.1923010.94130HepG2SUPV3L1
COL2A1ENSG00000139219.133723.281202804.456200.408803.694703.06240HepG2TAF15
COL2A1ENSG00000139219.131431.49010383.374501.9006032.2232030.27080HepG2TARDBP
COL2A1ENSG00000139219.133598.558701186.525001.600608.694906.91970HepG2TBRG4
COL2A1ENSG00000139219.131325.61870679.979500.9630011.597509.83840HepG2TFIP11
COL2A1ENSG00000139219.135353.14800650.973103.0396048.1679046.55800HepG2TIAL1
COL2A1ENSG00000139219.132963.72700975.410201.6032011.475508.77140HepG2TRA2A
COL2A1ENSG00000139219.13413.48450656.86010-0.667808.976108.05060HepG2TRIM56
COL2A1ENSG00000139219.134218.022301400.208701.5908031.3412028.39130HepG2TUFM
COL2A1ENSG00000139219.13622.418901251.34360-1.0075015.4594013.92830HepG2U2AF1
COL2A1ENSG00000139219.13463.981001482.14440-1.6755030.9306028.29240HepG2UBE2L3
COL2A1ENSG00000139219.13359.04490599.27290-0.739004.729003.73220HepG2UCHL5
COL2A1ENSG00000139219.137297.813004296.649600.7642017.8406016.36850HepG2UPF1
COL2A1ENSG00000139219.131710.06960928.723000.880605.585404.12250HepG2UPF2
COL2A1ENSG00000139219.135974.886404416.317600.4360010.221508.35860HepG2UTP18
COL2A1ENSG00000139219.133345.339204148.23870-0.310305.739604.92840HepG2UTP3
COL2A1ENSG00000139219.13947.69510628.677500.592002.849301.73210HepG2XPO5
COL2A1ENSG00000139219.13325.14370955.30990-1.5549010.700608.30750HepG2XRCC5
COL2A1ENSG00000139219.133988.67210998.782201.9976060.3566057.46360HepG2XRN2
COL2A1ENSG00000139219.132486.559004725.48500-0.9263059.4534057.78280HepG2ZNF622
COL2A1ENSG00000139219.131933.98510970.601000.9945011.460408.73980HepG2ZRANB2
COL2A1ENSG00000139219.1326.680900.858004.958505.697304.90790K562AQR
COL2A1ENSG00000139219.130.8912012.01670-3.753202.626901.92720K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL2A1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COL2A1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COL2A1 is not avaliable on ENCORE database.